Robert Gentleman

39 papers Misc 4Journal 34
YearRankTypeTitle / Venue / Authors
2025 J jnl
Enhancing statistical analysis of real world data.
Database J. Biol. Databases Curation
Laha Ale, Robert Gentleman, Christopher Endres, Sam Pullman, Nathan Palmer, Rafael S. Gonçalves, Deepayan Sarkar
2024 J jnl
Implications of mappings between ICD clinical diagnosis codes and Human Phenotype Ontology terms.
CoRR
Amelia L. M. Tan, Rafael S. Gonçalves, William Yuan, Gabriel A. Brat, The Consortium for Clinical Characterization of COVID-19 by EHR, Robert Gentleman, Isaac S. Kohane
2024 J jnl
The text2term tool to map free-text descriptions of biomedical terms to ontologies.
Database J. Biol. Databases Curation
Rafael S. Gonçalves, Jason Payne, Amelia L. M. Tan, Carmen Benitez, Jamie Haddock, Robert Gentleman
2024 J jnl
The text2term tool to map free-text descriptions of biomedical terms to ontologies.
CoRR
Rafael S. Gonçalves, Jason Payne, Amelia L. M. Tan, Carmen Benitez, Jamie Haddock, Robert Gentleman
2024 J jnl
nhanesA: achieving transparency and reproducibility in NHANES research.
Database J. Biol. Databases Curation
Laha Ale, Robert Gentleman, Teresa Filshtein Sonmez, Deepayan Sarkar, Christopher Endres
2023 J jnl
BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions.
Bioinform.
Ludwig Geistlinger, Roger Vargas, Tyrone Lee, Joshua Pan, Edward L. Huttlin, Robert Gentleman
2017 J jnl
VariantTools: an extensible framework for developing and testing variant callers.
Bioinform.
Michael F. Lawrence, Robert Gentleman
2014 J jnl
Discriminative motif analysis of high-throughput dataset.
Bioinform.
Zizhen Yao, Kyle L. MacQuarrie, Abraham P. Fong, Stephen J. Tapscott, Walter L. Ruzzo, Robert Gentleman
2014 Misc conf
Integrative Analysis of Two Cell Lines Derived from a Non-Small-Lung Cancer Patient - A Panomics Approach.
Pacific Symposium on Biocomputing
Oleg Mayba, Florian Gnad, Michael Peyton, Fan Zhang, Kimberly Walter, Pan Du, Melanie A. Huntley, Zhaoshi Jiang, Jinfeng Liu, Peter M. Haverty, Robert Gentleman, Ruiqiang Li, John D. Minna, Yingrui Li, David S. Shames, Zemin Zhang
2014 J jnl
gCMAP: user-friendly connectivity mapping with R.
Bioinform.
Thomas Sandmann, Sarah K. Kummerfeld, Robert Gentleman, Richard Bourgon
2013 J jnl
Software for Computing and Annotating Genomic Ranges.
PLoS Comput. Biol.
Michael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey
2011 — ch.
R Language.
International Encyclopedia of Statistical Science
Robert Gentleman, Wolfgang Huber, Vincent J. Carey
2011 J jnl
Towards BioDBcore: a community-defined information specification for biological databases.
Database J. Biol. Databases Curation
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
2011 J jnl
Towards BioDBcore: a community-defined information specification for biological databases.
Nucleic Acids Res.
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
2011 Misc conf
Workshop Introduction.
Pacific Symposium on Biocomputing
Michael F. Ochs, Rachel Karchin, Habtom W. Ressom, Robert Gentleman
2009 J jnl
Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x.
Bioinform.
Vincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby
2009 Misc conf
Interpreting Genetics Of Gene Expression: Integrative Architecture In Bioconductor.
Pacific Symposium on Biocomputing
Vincent J. Carey, Robert Gentleman
2009 J jnl
Knowledge based identification of essential signaling from genome-scale siRNA experiments.
BMC Syst. Biol.
Armand Bankhead, Iliana Sach, Chester Ni, Nolwenn LeMeur, Mark Kruger, Marc Ferrer, Robert Gentleman, Carol Rohl
2009 J jnl
Minimal Covers of Maximal Cliques for Interval Graphs.
Ars Comb.
Alain C. Vandal, Marston D. E. Conder, Robert Gentleman
2009 J jnl
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data.
Bioinform.
Martin Morgan, Simon Anders, Michael F. Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman
2009 J jnl
arrayQualityMetrics - a bioconductor package for quality assessment of microarray data.
Bioinform.
Audrey Kauffmann, Robert Gentleman, Wolfgang Huber
2009 J jnl
flowCore: a Bioconductor package for high throughput flow cytometry.
BMC Bioinform.
Florian Hahne, Nolwenn LeMeur, Ryan Remy Brinkman, Byron Ellis, Perry Haaland, Deepayan Sarkar, Josef Spidlen, Errol Strain, Robert Gentleman
2009 J jnl
iFlow: A Graphical User Interface for Flow Cytometry Tools in Bioconductor.
Adv. Bioinformatics
Kyongryun Lee, Florian Hahne, Deepayan Sarkar, Robert Gentleman
2009 J jnl
rtracklayer: an R package for interfacing with genome browsers.
Bioinform.
Michael F. Lawrence, Robert Gentleman, Vincent J. Carey
2008 J jnl
Estimating node degree in bait-prey graphs.
Bioinform.
Denise Scholtens, Tony Chiang, Wolfgang Huber, Robert Gentleman
2008 J jnl
Gene set enrichment analysis using linear models and diagnostics.
Bioinform.
Assaf P. Oron, Zhen Jiang, Robert Gentleman
2008 J jnl
Rintact: enabling computational analysis of molecular interaction data from the IntAct repository.
Bioinform.
Tony Chiang, Nianhua Li, Sandra E. Orchard, Samuel Kerrien, Henning Hermjakob, Robert Gentleman, Wolfgang Huber
2008 Misc conf
SGDI: System for Genomic Data Integration.
Pacific Symposium on Biocomputing
Vincent J. Carey, Jeff Gentry, Deepayan Sarkar, Robert Gentleman, Srini Ramaswamy
2008 J jnl
Using flowViz to visualize flow cytometry data.
Bioinform.
Deepayan Sarkar, Nolwenn Le Meur, Robert Gentleman
2007 J jnl
Extensions to gene set enrichment.
Bioinform.
Zhen Jiang, Robert Gentleman
2007 J jnl
GGtools: analysis of genetics of gene expression in bioconductor.
Bioinform.
Vincent J. Carey, Martin Morgan, Seth Falcon, Ross Lazarus, Robert Gentleman
2007 J jnl
Graphs in molecular biology.
BMC Bioinform.
Wolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman
2007 J jnl
Using GOstats to test gene lists for GO term association.
Bioinform.
Seth Falcon, Robert Gentleman
2005 J jnl
Local modeling of global interactome networks.
Bioinform.
Denise Scholtens, Marc Vidal, Robert Gentleman
2005 J jnl
Network structures and algorithms in Bioconductor.
Bioinform.
Vincent J. Carey, Jeff Gentry, Elizabeth Whalen, Robert Gentleman
2004 J jnl
A graph-theoretic approach to testing associations between disparate sources of functional genomics data.
Bioinform.
Raji Balasubramanian, Thomas LaFramboise, Denise Scholtens, Robert Gentleman
2004 J jnl
matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements.
Bioinform.
Wolfgang Huber, Robert Gentleman
2003 J jnl
An extensible application for assembling annotation for genomic data.
Bioinform.
Jianhua Zhang, Vincent J. Carey, Robert Gentleman
1996 J jnl
Book reviews.
Stat. Comput.
Nozer D. Singpurwalla, Robert Gentleman, Willem J. Heiser, Dibyen Majumdar