Robert G. Beiko

23 papers B 1C 1Journal 21
YearRankTypeTitle / Venue / Authors
2023 J jnl
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database.
Nucleic Acids Res.
Brian P. Alcock, William Huynh, Romeo Chalil, Keaton W. Smith, Amogelang R. Raphenya, Mateusz A. Wlodarski, Arman Edalatmand, Aaron J. Petkau, Sohaib A. Syed, Kara K. Tsang, Sheridan J. C. Baker, Mugdha Dave, Madeline C. McCarthy, Karyn M. Mukiri, Jalees A. Nasir, Bahar Golbon, Hamna Imtiaz, Xingjian Jiang, Komal Kaur, Megan Kwong, Zi Cheng Liang, Keyu C. Niu, Prabakar Shan, Jasmine Y. J. Yang, Kristen L. Gray, Gemma Hoad, Baofeng Jia, Timsy Bhando, Lindsey A. Carfrae, Maya A. Farha, Shawn French, Rodion Gordzevich, Kenneth Rachwalski, Megan M. Tu, Emily Bordeleau, Damion M. Dooley, Emma J. Griffiths, Haley L. Zubyk, Eric D. Brown, Finlay Maguire, Robert G. Beiko, William W. L. Hsiao, Fiona S. L. Brinkman, Gary H. Van Domselaar, Andrew G. McArthur
2022 J jnl
Genome-scale prediction of bacterial promoters.
Biosyst.
Miria Bernardino, Robert G. Beiko
2022 J jnl
deepSimDEF: deep neural embeddings of gene products and gene ontology terms for functional analysis of genes.
Bioinform.
Ahmad Pesaranghader, Stan Matwin, Marina Sokolova, Jean-Christophe Grenier, Robert G. Beiko, Julie Hussin
2021 C conf
Genome-scale prediction of bacterial promoters.
CIBCB
Miria Bernardino, Robert G. Beiko
2020 J jnl
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database.
Nucleic Acids Res.
Brian P. Alcock, Amogelang R. Raphenya, Tammy T. Y. Lau, Kara K. Tsang, Mégane Bouchard, Arman Edalatmand, William Huynh, Anna-Lisa V. Nguyen, Annie A. Cheng, Sihan Liu, Sally Y. Min, Anatoly Miroshnichenko, Hiu-Ki Tran, Rafik E. Werfalli, Jalees A. Nasir, Martins Oloni, David J. Speicher, Alexandra Florescu, Bhavya Singh, Mateusz Faltyn, Anastasia Hernández-Koutoucheva, Arjun N. Sharma, Emily Bordeleau, Andrew C. Pawlowski, Haley L. Zubyk, Damion M. Dooley, Emma J. Griffiths, Finlay Maguire, Geoffrey L. Winsor, Robert G. Beiko, Fiona S. L. Brinkman, William W. L. Hsiao, Gary H. Van Domselaar, Andrew G. McArthur
2020 J jnl
PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data.
Bioinform.
Michael A. Peabody, Wing Yin Venus Lau, Gemma Hoad, Baofeng Jia, Finlay Maguire, Kristen L. Gray, Robert G. Beiko, Fiona S. L. Brinkman
2016 J jnl
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees.
Algorithmica
Chris Whidden, Robert G. Beiko, Norbert Zeh
2016 J jnl
simDEF: definition-based semantic similarity measure of gene ontology terms for functional similarity analysis of genes.
Bioinform.
Ahmad Pesaranghader, Stan Matwin, Marina Sokolova, Robert G. Beiko
2014 J jnl
STAMP: statistical analysis of taxonomic and functional profiles.
Bioinform.
Donovan H. Parks, Gene W. Tyson, Philip Hugenholtz, Robert G. Beiko
2013 J jnl
Fixed-Parameter Algorithms for Maximum Agreement Forests.
SIAM J. Comput.
Chris Whidden, Robert G. Beiko, Norbert Zeh
2013 J jnl
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees
CoRR
Chris Whidden, Robert G. Beiko, Norbert Zeh
2013 J jnl
SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles.
Bioinform.
Michael S. Porter, Robert G. Beiko
2011 J jnl
Classifying short genomic fragments from novel lineages using composition and homology.
BMC Bioinform.
Donovan H. Parks, Norman J. MacDonald, Robert G. Beiko
2011 J jnl
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests
CoRR
Chris Whidden, Robert G. Beiko, Norbert Zeh
2010 J jnl
Efficient learning of microbial genotype-phenotype association rules.
Bioinform.
Norman J. MacDonald, Robert G. Beiko
2010 B conf
Fast FPT Algorithms for Computing Rooted Agreement Forests: Theory and Experiments.
SEA
Chris Whidden, Robert G. Beiko, Norbert Zeh
2010 J jnl
Identifying biologically relevant differences between metagenomic communities.
Bioinform.
Donovan H. Parks, Robert G. Beiko
2009 J jnl
Radié: visualizing taxon properties and parsimonious mappings using a radial phylogenetic tree.
Bioinform.
Jacqueline L. Whalley, Stephen Brooks, Robert G. Beiko
2007 J jnl
A simulation test bed for hypotheses of genome evolution.
Bioinform.
Robert G. Beiko, Robert L. Charlebois
2007 J jnl
A two-phase strategy for detecting recombination in nucleotide sequences.
South Afr. Comput. J.
Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan
2006 J jnl
Detecting recombination in evolving nucleotide sequences.
BMC Bioinform.
Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan
2005 J jnl
A word-oriented approach to alignment validation.
Bioinform.
Robert G. Beiko, Cheong Xin Chan, Mark A. Ragan
2005 J jnl
GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA.
BMC Bioinform.
Robert G. Beiko, Robert L. Charlebois