Rob J. De Boer

20 papers Journal 20
YearRankTypeTitle / Venue / Authors
2025 J jnl
How are estimated cellular turnover rates influenced by the dynamics of a source population?
PLoS Comput. Biol.
Arpit C. Swain, José A. M. Borghans, Rob J. De Boer
2021 J jnl
Challenges in cybersecurity: Lessons from biological defense systems.
CoRR
Edward C. Schrom II, Ann Kinzig, Stephanie Forrest, Andrea L. Graham, Simon A. Levin, Carl T. Bergstrom, Carlos Castillo-Chavez, James P. Collins, Rob J. De Boer, Adam Doupé, Roya Ensafi, Stuart I. Feldman, Bryan T. Grenfell, J. Alex Halderman, Silvie Huijben, Carlo C. Maley, Melanie E. Moses, Alan S. Perelson, Charles Perrings, Joshua B. Plotkin, Jennifer Rexford, Mohit Tiwari
2021 J jnl
The limitations, dangers, and benefits of simple methods for testing identifiability.
PLoS Comput. Biol.
Mario Castro, Rob J. De Boer
2020 J jnl
Testing structural identifiability by a simple scaling method.
PLoS Comput. Biol.
Mario Castro, Rob J. De Boer
2019 J jnl
Toxin production spontaneously becomes regulated by local cell density in evolving bacterial populations.
PLoS Comput. Biol.
Hilje M. Doekes, Rob J. De Boer, Rutger Hermsen
2016 J jnl
RTCR: a pipeline for complete and accurate recovery of T cell repertoires from high throughput sequencing data.
Bioinform.
Bram Gerritsen, Aridaman Pandit, Arno C. Andeweg, Rob J. De Boer
2015 J jnl
Crawling and Gliding: A Computational Model for Shape-Driven Cell Migration.
PLoS Comput. Biol.
Ioana Niculescu, Johannes Textor, Rob J. De Boer
2015 J jnl
Reconciling Estimates of Cell Proliferation from Stable Isotope Labeling Experiments.
PLoS Comput. Biol.
Raya Ahmed, Liset Westera, Julia Drylewicz, Marjet Elemans, Yan Zhang, Elizabeth Kelly, Rajko Reljic, Kiki Tesselaar, Rob J. De Boer, Derek C. Macallan, José A. M. Borghans, Becca Asquith
2014 J jnl
Immuno-epidemiological Modeling of HIV-1 Predicts High Heritability of the Set-Point Virus Load, while Selection for CTL Escape Dominates Virulence Evolution.
PLoS Comput. Biol.
Christiaan H. van Dorp, Michiel van Boven, Rob J. De Boer
2014 J jnl
Random Migration and Signal Integration Promote Rapid and Robust T Cell Recruitment.
PLoS Comput. Biol.
Johannes Textor, Sarah E. Henrickson, Judith N. Mandl, Ulrich H. von Andrian, Jürgen Westermann, Rob J. De Boer, Joost B. Beltman
2013 J jnl
A new model to simulate and analyze proliferating cell populations in BrdU labeling experiments.
BMC Syst. Biol.
Daniella Schittler, Frank Allgöwer, Rob J. De Boer
2013 J jnl
Analytical results on the Beauchemin model of lymphocyte migration.
BMC Bioinform.
Johannes Textor, Mathieu Sinn, Rob J. De Boer
2013 J jnl
Virus Encoded MHC-Like Decoys Diversify the Inhibitory KIR Repertoire.
PLoS Comput. Biol.
Paola Carrillo-Bustamante, Can Kesmir, Rob J. De Boer
2012 J jnl
Chemotactic Migration of T Cells towards Dendritic Cells Promotes the Detection of Rare Antigens.
PLoS Comput. Biol.
Renske M. A. Vroomans, Athanasius F. M. Marée, Rob J. De Boer, Joost B. Beltman
2012 J jnl
Degenerate T-cell Recognition of Peptides on MHC Molecules Creates Large Holes in the T-cell Repertoire.
PLoS Comput. Biol.
Jorg J. A. Calis, Rob J. De Boer, Can Kesmir
2012 J jnl
Which of Our Modeling Predictions Are Robust?
PLoS Comput. Biol.
Rob J. De Boer
2010 J jnl
Current Estimates for HIV-1 Production Imply Rapid Viral Clearance in Lymphoid Tissues.
PLoS Comput. Biol.
Rob J. De Boer, Ruy M. Ribeiro, Alan S. Perelson
2010 J jnl
Explicit Kinetic Heterogeneity: Mathematical Models for Interpretation of Deuterium Labeling of Heterogeneous Cell Populations.
PLoS Comput. Biol.
Vitaly V. Ganusov, José A. M. Borghans, Rob J. De Boer
2008 J jnl
Dynamics of Immune Escape during HIV/SIV Infection.
PLoS Comput. Biol.
Christian L. Althaus, Rob J. De Boer
2006 J jnl
Estimating Costs and Benefits of CTL Escape Mutations in SIV/HIV Infection.
PLoS Comput. Biol.
Vitaly V. Ganusov, Rob J. De Boer