Rob Egan

14 papers A 3B 1Journal 7Unranked 3
YearRankTypeTitle / Venue / Authors
2024 J jnl
Exabiome: Advancing Microbial Science through Exascale Computing.
Comput. Sci. Eng.
Steven A. Hofmeyr, Aydin Buluç, Robert Riley, Rob Egan, Oguz Selvitopi, Leonid Oliker, Katherine A. Yelick, Migun Shakya, Brett Youtsey, Ariful Azad
2023 — conf
Designing Efficient SIMD Kernels for High Performance Sequence Alignment.
IPDPS Workshops
Doru-Thom Popovici, Muaaz Gul Awan, Giulia Guidi, Rob Egan, Steven A. Hofmeyr, Leonid Oliker, Katherine A. Yelick
2022 J jnl
Persistent memory as an effective alternative to random access memory in metagenome assembly.
BMC Bioinform.
Jingchao Sun, Zhining Qiu, Rob Egan, Harrison Ho, Yue Li, Zhong Wang
2021 A conf
Accelerating large scale
SC
Muaaz Gul Awan, Steven A. Hofmeyr, Rob Egan, Nan Ding, Aydin Buluç, Jack Deslippe, Leonid Oliker, Katherine A. Yelick
2020 J jnl
The Parallelism Motifs of Genomic Data Analysis.
CoRR
Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker
2019 J jnl
De novo Nanopore read quality improvement using deep learning.
BMC Bioinform.
Nathan LaPierre, Rob Egan, Wei Wang, Zhong Wang
2018 J jnl
Extreme Scale De Novo Metagenome Assembly.
CoRR
Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
2018 A conf
Extreme scale de novo metagenome assembly.
SC
Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
2017 J jnl
Extreme-Scale De Novo Genome Assembly.
CoRR
Evangelos Georganas, Steven A. Hofmeyr, Rob Egan, Aydin Buluç, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick
2017 — conf
MerBench: PGAS Benchmarks for High Performance Genome Assembly.
PAW@SC
Evangelos Georganas, Marquita Ellis, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick
2017 — conf
Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems.
Euro-Par
Marquita Ellis, Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick
2015 A conf
HipMer: an extreme-scale de novo genome assembler.
SC
Evangelos Georganas, Aydin Buluç, Jarrod Chapman, Steven A. Hofmeyr, Chaitanya Aluru, Rob Egan, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick
2013 J jnl
ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies.
Bioinform.
Scott C. Clark, Rob Egan, Peter I. Frazier, Zhong Wang
2013 B conf
Automatic Outlier Detection for Genome Assembly Quality Assessment.
e-Science
Taghrid Samak, Rob Egan, Brian Bushnell, Daniel K. Gunter, Alex Copeland, Zhong Wang