Rita Casadio - RankMe

108 papers A 7C 3Misc 1Journal 71Unranked 22

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	DDGemb: predicting protein stability change upon single- and multi-point variations with embeddings and deep learning. Bioinform. Castrense Savojardo, Matteo Manfredi, Pier Luigi Martelli, Rita Casadio
2025	J	`jnl`	Embedding-Based Alignments Capture Structural and Sequence Domains of Distantly Related Multifunctional Human Proteins. Comput. Gabriele Vazzana, Matteo Manfredi, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio
2023	J	`jnl`	CoCoNat: a novel method based on deep learning for coiled-coil prediction. Bioinform. Giovanni Madeo, Castrense Savojardo, Matteo Manfredi, Pier Luigi Martelli, Rita Casadio
2022	J	`jnl`	E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants. Bioinform. Matteo Manfredi, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio
2021	J	`jnl`	BENZ WS: the Bologna ENZyme Web Server for four-level EC number annotation. Nucleic Acids Res. Davide Baldazzi, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio
2021	J	`jnl`	On the critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation. Briefings Bioinform. Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Piero Fariselli
2020	J	`jnl`	DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks. Bioinform. Castrense Savojardo, Niccolò Bruciaferri, Giacomo Tartari, Pier Luigi Martelli, Rita Casadio
2020	J	`jnl`	Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito. BMC Bioinform. Castrense Savojardo, Pier Luigi Martelli, Giacomo Tartari, Rita Casadio
2019	J	`jnl`	On the biases in predictions of protein stability changes upon variations: the INPS test case. Bioinform. Ludovica Montanucci, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Piero Fariselli
2019	—	`ch.`	Protein Functional Annotation. Encyclopedia of Bioinformatics and Computational Biology (2) Pier Luigi Martelli, Giuseppe Profiti, Rita Casadio
2019	—	`ch.`	Transmembrane Domain Prediction. Encyclopedia of Bioinformatics and Computational Biology (2) Pier Luigi Martelli, Castrense Savojardo, Giuseppe Profiti, Rita Casadio
2018	J	`jnl`	BUSCA: an integrative web server to predict subcellular localization of proteins. Nucleic Acids Res. Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Giuseppe Profiti, Rita Casadio
2018	J	`jnl`	DeepSig: deep learning improves signal peptide detection in proteins. Bioinform. Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
2017	J	`jnl`	ISPRED4: interaction sites PREDiction in protein structures with a refining grammar model. Bioinform. Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
2017	J	`jnl`	SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments. Bioinform. Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
2017	J	`jnl`	The Bologna Annotation Resource (BAR 3.0): improving protein functional annotation. Nucleic Acids Res. Giuseppe Profiti, Pier Luigi Martelli, Rita Casadio
2016	J	`jnl`	INPS-MD: a web server to predict stability of protein variants from sequence and structure. Bioinform. Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
2016	J	`jnl`	NET-GE: a web-server for NETwork-based human gene enrichment. Bioinform. Samuele Bovo, Pietro di Lena, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
2016	J	`jnl`	Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jiménez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak
2015	J	`jnl`	AlignBucket: a tool to speed up 'all-against-all' protein sequence alignments optimizing length constraints. Bioinform. Giuseppe Profiti, Piero Fariselli, Rita Casadio
2015	J	`jnl`	INPS: predicting the impact of non-synonymous variations on protein stability from sequence. Bioinform. Piero Fariselli, Pier Luigi Martelli, Castrense Savojardo, Rita Casadio
2015	J	`jnl`	TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins. Bioinform. Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
2014	J	`jnl`	TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs. Bioinform. Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
2013	J	`jnl`	BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming. Bioinform. Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
2013	J	`jnl`	BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes. Bioinform. Castrense Savojardo, Piero Fariselli, Rita Casadio
2013	—	`conf`	Community Detection within Clusters Helps Large Scale Protein Annotation - Preliminary Results of Modularity Maximization for the BAR+ Database. BIOINFORMATICS Giuseppe Profiti, Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
2013	J	`jnl`	Extended and Robust Protein Sequence Annotation over Conservative Nonhierarchical Clusters: The Case Study of the ABC Transporters. ACM J. Emerg. Technol. Comput. Syst. Damiano Piovesan, Giuseppe Profiti, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
2013	J	`jnl`	How to inherit statistically validated annotation within BAR+ protein clusters. BMC Bioinform. Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Giuseppe Profiti, Andrea Zauli, Ivan Rossi, Rita Casadio
2013	J	`jnl`	MIMO: an efficient tool for molecular interaction maps overlap. BMC Bioinform. Pietro di Lena, Gang Wu, Pier Luigi Martelli, Rita Casadio, Christine Nardini
2013	J	`jnl`	Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations. BMC Bioinform. Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
2013	—	`conf`	Protein Sequence Annotation by means of Community Detection. IWBBIO Giuseppe Profiti, Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
2013	J	`jnl`	SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation. Database J. Biol. Databases Curation Damiano Piovesan, Giuseppe Profiti, Pier Luigi Martelli, Piero Fariselli, Luca Fontanesi, Rita Casadio
2013	J	`jnl`	The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields. Bioinform. Valentina Indio, Pier Luigi Martelli, Castrense Savojardo, Piero Fariselli, Rita Casadio
2012	J	`jnl`	The human "magnesome": detecting magnesium binding sites on human proteins. BMC Bioinform. Damiano Piovesan, Giuseppe Profiti, Pier Luigi Martelli, Rita Casadio
2011	J	`jnl`	ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Res. Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole
2011	J	`jnl`	BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences. Nucleic Acids Res. Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Andrea Zauli, Ivan Rossi, Rita Casadio
2011	J	`jnl`	Blurring contact maps of thousands of proteins: what we can learn by reconstructing 3D structure. BioData Min. Marco Vassura, Pietro di Lena, Luciano Margara, Maria Mirto, Giovanni Aloisio, Piero Fariselli, Rita Casadio
2011	—	`conf`	Disulfide Connectivity Prediction with Extreme Learning Machines. BIOINFORMATICS Monther Alhamdoosh, Castrense Savojardo, Piero Fariselli, Rita Casadio
2011	—	`ch.`	Divide and Conquer Strategies for Protein Structure Prediction. Mathematical Approaches to Polymer Sequence Analysis and Related Problems Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio
2011	J	`jnl`	Improving the detection of transmembrane β-barrel chains with N-to-1 extreme learning machines. Bioinform. Castrense Savojardo, Piero Fariselli, Rita Casadio
2011	J	`jnl`	Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization. Bioinform. Castrense Savojardo, Piero Fariselli, Monther Alhamdoosh, Pier Luigi Martelli, Andrea Pierleoni, Rita Casadio
2011	J	`jnl`	Is There an Optimal Substitution Matrix for Contact Prediction with Correlated Mutations? IEEE ACM Trans. Comput. Biol. Bioinform. Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio
2011	—	`conf`	Machine-Learning Methods to Predict Protein Interaction Sites in Folded Proteins. CIBB Castrense Savojardo, Piero Fariselli, Damiano Piovesan, Pier Luigi Martelli, Rita Casadio
2011	J	`jnl`	MemLoci: predicting subcellular localization of membrane proteins in eukaryotes. Bioinform. Andrea Pierleoni, Pier Luigi Martelli, Rita Casadio
2011	J	`jnl`	MemPype: a pipeline for the annotation of eukaryotic membrane proteins. Nucleic Acids Res. Andrea Pierleoni, Valentina Indio, Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
2010	J	`jnl`	Fast overlapping of protein contact maps by alignment of eigenvectors. Bioinform. Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio
2010	—	`conf`	Prediction of the Bonding State of Cysteine Residues in Proteins with Machine-Learning Methods. CIBB Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Priyank Shukla, Rita Casadio
2009	J	`jnl`	A graph theoretic approach to protein structure selection. Artif. Intell. Medicine Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio
2009	J	`jnl`	CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information. Bioinform. Lisa Bartoli, Piero Fariselli, Anders Krogh, Rita Casadio
2009	J	`jnl`	Grammatical-Restrained Hidden Conditional Random Fields for Bioinformatics applications. Algorithms Mol. Biol. Piero Fariselli, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio
2009	—	`conf`	Improving Coiled-Coil Prediction with Evolutionary Information. CIBB Piero Fariselli, Lisa Bartoli, Rita Casadio
2009	J	`jnl`	On the Reconstruction of Three-dimensional Protein Structures from Contact Maps. Algorithms Pietro di Lena, Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio
2009	C	`conf`	On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices. WABI Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio
2009	—	`conf`	Prediction of Protein-Protein Interacting Sites: How to Bridge Molecular Events to Large Scale Protein Interaction Networks. CMSB Lisa Bartoli, Pier Luigi Martelli, Ivan Rossi, Piero Fariselli, Rita Casadio
2009	J	`jnl`	Progress and challenges in predicting protein-protein interaction sites. Briefings Bioinform. Iakes Ezkurdia, Lisa Bartoli, Piero Fariselli, Rita Casadio, Alfonso Valencia, Michael L. Tress
2008	—	`conf`	A New Protein Representation Based on Fragment Contacts: Towards an Improvement of Contact Maps Predictions. CIBB Pietro di Lena, Luciano Margara, Marco Vassura, Piero Fariselli, Rita Casadio
2008	—	`conf`	A Protein Structure Prediction Service in the ProGenGrid System. HealthGrid Maria Mirto, Alessandra Ferramosca, Daniele Tartarini, Simone Romano, Alessandro Negro, Gianluca Tasco, Sandro Fiore, Vincenzo Zara, Rita Casadio, Giovanni Aloisio
2008	J	`jnl`	A three-state prediction of single point mutations on protein stability changes. BMC Bioinform. Emidio Capriotti, Piero Fariselli, Ivan Rossi, Rita Casadio
2008	J	`jnl`	FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps. Bioinform. Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio
2008	—	`ed.`	International Conference on Biocomputation, Bioinformatics, and Biomedical Technologies, BIOTECHNO 2008, June 29 - July 5, 2008, Bucharest, Romania BIOTECHNO Rita Casadio, Ovidiu Daescu, Cosmin Dini, Daniela Stan Raicu
2008	J	`jnl`	PredGPI: a GPI-anchor predictor. BMC Bioinform. Andrea Pierleoni, Pier Luigi Martelli, Rita Casadio
2008	A	`conf`	Predicting protein thermostability changes from sequence upon multiple mutations. ISMB Ludovica Montanucci, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
2008	J	`jnl`	Reconstruction of 3D Structures From Protein Contact Maps. IEEE ACM Trans. Comput. Biol. Bioinform. Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio
2007	—	`conf`	A Graph Theoretic Approach to Protein Structure Selection. WILF Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio
2007	J	`jnl`	A computational approach for detecting peptidases and their specific inhibitors at the genome level. BMC Bioinform. Lisa Bartoli, Remo Calabrese, Piero Fariselli, Damiano G. Mita, Rita Casadio
2007	J	`jnl`	Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics. BMC Bioinform. Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole
2007	C	`conf`	Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps. WABI Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio
2007	J	`jnl`	Guest Editor's Introduction to the Special Section on Computational Biology and Bioinformatics (WABI) - Part 2. IEEE ACM Trans. Comput. Biol. Bioinform. Rita Casadio
2007	Misc	`conf`	High Throughput Comparison of Prokaryotic Genomes. PPAM Luciana Carota, Lisa Bartoli, Piero Fariselli, Pier Luigi Martelli, Ludovica Montanucci, Giorgio Pietro Maggi, Rita Casadio
2007	—	`conf`	High Throughput Protein Similarity Searches in the LIBI Grid Problem Solving Environment. ISPA Workshops Maria Mirto, Ivan Rossi, Italo Epicoco, Sandro Fiore, Piero Fariselli, Rita Casadio, Giovanni Aloisio
2007	J	`jnl`	K-Fold: a tool for the prediction of the protein folding kinetic order and rate. Bioinform. Emidio Capriotti, Rita Casadio
2007	—	`conf`	Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. BIRD Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh
2007	—	`conf`	Reconstruction of 3D Structures from Protein Contact Maps. ISBRA Marco Vassura, Luciano Margara, Filippo Medri, Pietro di Lena, Piero Fariselli, Rita Casadio
2007	J	`jnl`	The WWWH of remote homolog detection: The state of the art. Briefings Bioinform. Piero Fariselli, Ivan Rossi, Emidio Capriotti, Rita Casadio
2007	J	`jnl`	eSLDB: eukaryotic subcellular localization database. Nucleic Acids Res. Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
2006	—	`conf`	BaCelLo: a balanced subcellular localization predictor. ISMB (Supplement of Bioinformatics) Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
2006	J	`jnl`	Guest Editor's Introduction to the Special Issue on Computational Biology and Bioinformatics - Part 1. IEEE ACM Trans. Comput. Biol. Bioinform. Rita Casadio
2006	J	`jnl`	PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Res. Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
2006	J	`jnl`	Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information. Bioinform. Emidio Capriotti, Remo Calabrese, Rita Casadio
2005	J	`jnl`	A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins. BMC Bioinform. Piero Fariselli, Pier Luigi Martelli, Rita Casadio
2005	C	`ed.`	Algorithms in Bioinformatics, 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings WABI Rita Casadio, Gene Myers
2005	J	`jnl`	I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Res. Emidio Capriotti, Piero Fariselli, Rita Casadio
2005	J	`jnl`	Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society. BMC Bioinform. Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone
2005	—	`conf`	Predicting protein stability changes from sequences using support vector machines. ECCB/JBI Emidio Capriotti, Piero Fariselli, Remo Calabrese, Rita Casadio
2005	J	`jnl`	Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity. BMC Bioinform. Luciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D'Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella
2005	J	`jnl`	TRAMPLE: the transmembrane protein labelling environment. Nucleic Acids Res. Piero Fariselli, Michele Finelli, Ivan Rossi, Mauro Amico, Andrea Zauli, Pier Luigi Martelli, Rita Casadio
2004	—	`conf`	A neural-network-based method for predicting protein stability changes upon single point mutations. ISMB/ECCB (Supplement of Bioinformatics) Emidio Capriotti, Piero Fariselli, Rita Casadio
2004	J	`jnl`	ConSeq: the identification of functionally and structurally important residues in protein sequences. Bioinform. Carine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko, Piero Fariselli, Rita Casadio, Nir Ben-Tal
2003	—	`conf`	A neural network method to improve prediction of protein-protein interaction sites in heterocomplexes. NNSP Piero Fariselli, Andrea Zauli, Ivan Rossi, Michele Finelli, Pier Luigi Martelli, Rita Casadio
2003	—	`conf`	An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins. ISMB (Supplement of Bioinformatics) Pier Luigi Martelli, Piero Fariselli, Rita Casadio
2003	J	`jnl`	In silico prediction of the structure of membrane proteins: Is it feasible? Briefings Bioinform. Rita Casadio, Piero Fariselli, Pier Luigi Martelli
2003	J	`jnl`	MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments. Bioinform. Piero Fariselli, Michele Finelli, Davide Marchignoli, Pier Luigi Martelli, Ivan Rossi, Rita Casadio
2003	—	`conf`	Prediction of Signal Peptide in Proteins with Neural Networks. WIRN Piero Fariselli, Giacomo Finocchiaro, Rita Casadio
2003	J	`jnl`	SPEPlip: the detection of signal peptide and lipoprotein cleavage sites. Bioinform. Piero Fariselli, Giacomo Finocchiaro, Rita Casadio
2002	A	`conf`	A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. ISMB Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio
2001	—	`conf`	Improved prediction of the number of residue contacts in proteins by recurrent neural networks. ISMB (Supplement of Bioinformatics) Gianluca Pollastri, Pierre Baldi, Piero Fariselli, Rita Casadio
2001	J	`jnl`	Prediction of disulfide connectivity in proteins. Bioinform. Piero Fariselli, Rita Casadio
2001	J	`jnl`	RCNPRED: prediction of the residue co-ordination numbers in proteins. Bioinform. Piero Fariselli, Rita Casadio
2000	A	`conf`	Prediction of the Number of Residue Contacts in Proteins. ISMB Piero Fariselli, Rita Casadio
1999	A	`conf`	A Data Base of Minimally Frustrated Alpha-Helical Segments Extracted from Proteins According to an Entropy Criterion. ISMB Rita Casadio, Mario Compiani, Piero Fariselli, Pier Luigi Martelli
1997	—	`conf`	Pseudodihedral Potential of Protein Residues and the Prediction of Folding. BCEC Piero Fariselli, Rita Casadio
1997	A	`conf`	Self-Organizing Neural Maps of the Coding Sequences of G-protein-coupled Receptors Reveal Local Domains Associated with Potentially Functional Determinants in the Proteins. ISMB P. Arrigo, Piero Fariselli, Rita Casadio
1997	J	`jnl`	The Prediction of Protein Secondary Structure with a Cascade Correlation Learning Architecture of Neural Networks. Neural Comput. Appl. Francesco Vivarelli, Piero Fariselli, Rita Casadio
1996	J	`jnl`	HTP: a neural network-based method for predicting the topology of helical transmembrane domains in proteins. Comput. Appl. Biosci. Piero Fariselli, Rita Casadio
1996	A	`conf`	Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming. ISMB Burkhard Rost, Rita Casadio, Piero Fariselli
1996	—	`conf`	The Identification of Locally Ordered Features an Completely unaligned Genomic Sequences by using an Unsupervised Neural Classifier. German Conference on Bioinformatics P. Arrigo, Piero Fariselli, Rita Casadio
1995	J	`jnl`	LGANN: a parallel system combining a local genetic algorithm and neural networks for the prediction of secondary structure of proteins. Comput. Appl. Biosci. Francesco Vivarelli, G. Giusti, Marco Villani, Renato Campanini, Piero Fariselli, Mario Compiani, Rita Casadio
1995	A	`conf`	Predicting Free Energy Contribution to the Conformational Stability of Folded Proteins From the Residue Sequence with Radial Basis Function Networks. ISMB Rita Casadio, Mario Compiani, Piero Fariselli, Francesco Vivarelli