Richard J. B. Dobson

131 papers A 8C 2Misc 4Journal 89Unranked 27

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Unlocking Electronic Health Records: A Hybrid Graph RAG Approach to Safe Clinical AI for Patient QA. CoRR Samuel Thio, Matthew Lewis, Spiros C. Denaxas, Richard J. B. Dobson
2026	J	`jnl`	VIEWER: an extensible visual analytics framework for enhancing mental healthcare. J. Am. Medical Informatics Assoc. Tao Wang, David Codling, Yamiko Joseph Msosa, Matthew Broadbent, Daisy Kornblum, Catherine Polling, Thomas Searle, Claire Delaney-Pope, Barbara Arroyo, Stuart MacLellan, Zoe Keddie, Mary Docherty, Angus Roberts, Robert Stewart, Philip K. McGuire, Richard J. B. Dobson, Robert Harland
2025	—	`conf`	A Framework for Flexible Extraction of Clinical Event Contextual Properties from Electronic Health Records. ACL (6) Shubham Agarwal, Thomas Searle, Mart Ratas, Anthony Shek, James T. Teo, Richard J. B. Dobson
2025	J	`jnl`	AI assisted prediction of unplanned intensive care admissions using natural language processing in elective neurosurgery. npj Digit. Medicine Julia Ive, Olatomiwa Olukoya, Jonathan P. Funnell, James Booker, Sze H. M. Lam, Ugan Reddy, Kawsar Noor, Richard J. B. Dobson, Astri M. V. Luoma, Hani J. Marcus
2025	J	`jnl`	An Explainable Anomaly Detection Framework for Monitoring Depression and Anxiety Using Consumer Wearable Devices. CoRR Yuezhou Zhang, Amos A. Folarin, Callum L. Stewart, Heet Sankesara, Yatharth Ranjan, Pauline Conde, Akash Roy Choudhury, Shaoxiong Sun, Zulqarnain Rashid, Richard J. B. Dobson
2025	J	`jnl`	Automating the extraction of otology symptoms from clinic letters: a methodological study using natural language processing. BMC Medical Informatics Decis. Mak. Nikhil Joshi, Kawsar Noor, Xi Bai, Marina Forbes, Talisa Ross, Liam Barrett, Richard J. B. Dobson, Anne G. M. Schilder, Nishchay Mehta, Watjana Lilaonitkul
2025	J	`jnl`	Design and implementation of a natural language processing system at the point of care: MiADE (medical information AI data extractor). BMC Medical Informatics Decis. Mak. Jennifer Jiang-Kells, James Brandreth, Leilei Zhu, Jack Ross, Yogini Jani, Enrico Costanza, Maisarah Amran, Zeljko Kraljevic, Xi Bai, M. M. N. S. Dilan, Jayathri Wijayarathne, Ravi Wickramaratne, Folkert W. Asselbergs, Richard J. B. Dobson, Wai Keong Wong, Anoop D. Shah
2025	J	`jnl`	Developing and Evaluating an AI-Assisted Prediction Model for Unplanned Intensive Care Admissions following Elective Neurosurgery using Natural Language Processing within an Electronic Healthcare Record System. CoRR Julia Ive, Olatomiwa Olukoya, Jonathan P. Funnell, James Booker, Sze H. M. Lam, Ugan Reddy, Kawsar Noor, Richard J. B. Dobson, Valpuri Luoma, Hani J. Marcus
2025	J	`jnl`	Developing clinical informatics to support direct care and population health management: the VIEWER story. CoRR Robert Harland, Tao Wang, David Codling, Catherine Polling, Matthew Broadbent, Holly Newton, Yamiko Joseph Msosa, Daisy Kornblum, Claire Delaney-Pope, Barbara Arroyo, Stuart MacLellan, Zoe Keddie, Mary Docherty, Angus Roberts, Derek Tracy, Philip K. McGuire, Richard J. B. Dobson, Robert Stewart
2025	J	`jnl`	Grounding Large Language Models in Clinical Evidence: A Retrieval-Augmented Generation System for Querying UK NICE Clinical Guidelines. CoRR Matthew Lewis, Samuel Thio, Richard J. B. Dobson, Spiros C. Denaxas
2025	J	`jnl`	How Deep is Your Guess? A Fresh Perspective on Deep Learning for Medical Time-Series Imputation. IEEE J. Biomed. Health Informatics Linglong Qian, Hugh Logan Ellis, Tao Wang, Jun Wang, Robin Mitra, Richard J. B. Dobson, Zina M. Ibrahim
2025	J	`jnl`	Multilingual Lexical Feature Analysis of Spoken Language for Predicting Major Depression Symptom Severity. CoRR Anastasiia Tokareva, Judith Dineley, Zoe Firth, Pauline Conde, Faith Matcham, Sara Siddi, Femke Lamers, Ewan Carr, Carolin Oetzmann, Daniel Leightley, Yuezhou Zhang, Amos A. Folarin, Josep Maria Haro, Brenda W. J. H. Penninx, Raquel Bailón, Srinivasan Vairavan, Til Wykes, Richard J. B. Dobson, Vaibhav A. Narayan, Matthew Hotopf, Nicholas Cummins, RADAR-CNS Consortium
2025	—	`conf`	Participant Engagement and Data Compliance in Remote Digital Studies for ADHD, Autism, and Eating Disorders. UbiComp Companion Heet Sankesara, Pauline Conde, Yatharth Ranjan, Isabel Yorke, Alice Barnes, Ulrike Schmidt, Richard J. B. Dobson, Amos A. Folarin, Zulqarnain Rashid
2025	J	`jnl`	RelCAT: Advancing Extraction of Clinical Inter-Entity Relationships from Unstructured Electronic Health Records. CoRR Shubham Agarwal, Vlad Dinu, Thomas Searle, Mart Ratas, Anthony Shek, Dan F. Stein, James T. Teo, Richard J. B. Dobson
2025	A	`conf`	Speech Reference Intervals: An Assessment of Feasibility in Depression Symptom Severity Prediction. INTERSPEECH Lauren L. White, Ewan Carr, Judith Dineley, Catarina Botelho, Pauline Conde, Faith Matcham, Carolin Oetzmann, Amos Folarin, George Fairs, Agnes Norbury, Stefano Goria, Srinivasan Vairavan, Til Wykes, Richard J. B. Dobson, Vaibhav A. Narayan, Matthew Hotopf, Alberto Abad, Isabel Trancoso, Nicholas Cummins
2025	J	`jnl`	The Psychogenic Machine: Simulating AI Psychosis, Delusion Reinforcement and Harm Enablement in Large Language Models. CoRR Joshua Au Yeung, Jacopo Dalmasso, Luca Foschini, Richard J. B. Dobson, Zeljko Kraljevic
2024	J	`jnl`	A pilot protocol and cohort for the investigation of non-pathological variability in speech. CoRR Nicholas Cummins, Lauren L. White, Zahia Rahman, Catriona Lucas, Tian Pan, Ewan Carr, Faith Matcham, Johnny Downs, Richard J. B. Dobson, Judith Dineley
2024	—	`conf`	Detecting Clinical Intent in Electronic Healthcare Records in a UK National Healthcare Hospital. ICHI Kawsar Noor, Katherine Smith, Jade O'Connell, Niamh Ingram, Baptiste Briot Ribeyre, Tom Searle, Wai Keong Wong, Richard J. B. Dobson
2024	J	`jnl`	How Deep is your Guess? A Fresh Perspective on Deep Learning for Medical Time-Series Imputation. CoRR Linglong Qian, Tao Wang, Jun Wang, Hugh Logan Ellis, Robin Mitra, Richard J. B. Dobson, Zina M. Ibrahim
2024	J	`jnl`	Improving Extraction of Clinical Event Contextual Properties from Electronic Health Records: A Comparative Study. CoRR Shubham Agarwal, Thomas Searle, Mart Ratas, Anthony Shek, James T. Teo, Richard J. B. Dobson
2024	J	`jnl`	Large Language Models for Medical Forecasting - Foresight 2. CoRR Zeljko Kraljevic, Joshua Au Yeung, Daniel Bean, James T. Teo, Richard J. B. Dobson
2024	J	`jnl`	Large-scale digital phenotyping: identifying depression and anxiety indicators in a general UK population with over 10,000 participants. CoRR Yuezhou Zhang, Callum L. Stewart, Yatharth Ranjan, Pauline Conde, Heet Sankesara, Zulqarnain Rashid, Shaoxiong Sun, Richard J. B. Dobson, Amos A. Folarin
2024	Misc	`conf`	Longitudinal Modeling of Depression Shifts Using Speech and Language. ICASSP Paula Andrea Pérez-Toro, Judith Dineley, Agnieszka Kaczkowska, Pauline Conde, Yuezhou Zhang, Faith Matcham, Sara Siddi, Josep Maria Haro, Stuart Bruce, Til Wykes, Raquel Bailón, Srinivasan Vairavan, Richard J. B. Dobson, Andreas K. Maier, Elmar Nöth, Juan Rafael Orozco-Arroyave, Vaibhav A. Narayan, Nicholas Cummins
2024	J	`jnl`	Predicting Future Disorders via Temporal Knowledge Graphs and Medical Ontologies. IEEE J. Biomed. Health Informatics Marco Postiglione, Daniel Bean, Zeljko Kraljevic, Richard J. B. Dobson, Vincenzo Moscato
2024	J	`jnl`	RADAR-IoT: An Open-Source, Interoperable, and Extensible IoT Gateway Framework for Health Research. Sensors Yatharth Ranjan, Jiangeng Chang, Heet Sankesara, Pauline Conde, Zulqarnain Rashid, Richard J. B. Dobson, Amos Folarin
2024	C	`conf`	Real-Time Mobile Health Analytics and Interventions Pipeline to Detect Acute Events in COPD. MobiQuitous Heet Sankesara, Yatharth Ranjan, Pauline Conde, Malik A. Althobiani, Zulqarnain Rashid, Akash Roy Choudhury, Callum L. Stewart, Yuezhou Zhang, Joanna Porter, John R. Hurst, Richard J. B. Dobson, Amos Folarin
2024	—	`conf`	Remote Monitoring of Epilepsy Patients with Wearable Device and Smartphone. UbiComp Companion Zulqarnain Rashid, Akash Roy Choudhury, Amos A. Folarin, Yatharth Ranjan, Pauline Conde, Heet Sankesara, Elisa Bruno, Richard J. B. Dobson
2024	J	`jnl`	Uncertainty-Aware Deep Attention Recurrent Neural Network for Heterogeneous Time Series Imputation. CoRR Linglong Qian, Zina M. Ibrahim, Richard J. B. Dobson
2024	J	`jnl`	Unveiling the Secrets: How Masking Strategies Shape Time Series Imputation. CoRR Linglong Qian, Zina M. Ibrahim, Wenjie Du, Yiyuan Yang, Richard J. B. Dobson
2024	J	`jnl`	VIEWER: an extensible visual analytics framework for enhancing mental healthcare. CoRR Tao Wang, David Codling, Yamiko Joseph Msosa, Matthew Broadbent, Daisy Kornblum, Catherine Polling, Thomas Searle, Claire Delaney-Pope, Barbara Arroyo, Stuart MacLellan, Zoe Keddie, Mary Docherty, Angus Roberts, Robert Stewart, Richard J. B. Dobson, Robert Harland
2024	A	`conf`	Variability of speech timing features across repeated recordings: a comparison of open-source extraction techniques. INTERSPEECH Judith Dineley, Ewan Carr, Lauren L. White, Catriona Lucas, Zahia Rahman, Tian Pan, Faith Matcham, Johnny Downs, Richard J. B. Dobson, Thomas F. Quatieri, Nicholas Cummins
2023	J	`jnl`	AI chatbots not yet ready for clinical use. Frontiers Digit. Health Joshua Au Yeung, Zeljko Kraljevic, Akish Luintel, Alfred Balston, Esther Idowu, Richard J. B. Dobson, James T. Teo
2023	—	`conf`	Addressing Class Imbalance in Electronic Health Records Data Imputation. KDH@IJCAI Linglong Qian, Zina M. Ibrahim, Ao Zhang, Richard J. B. Dobson
2023	J	`jnl`	Automatic Assessment of the 2-Minute Walk Distance for Remote Monitoring of People with Multiple Sclerosis. Sensors Spyridon Kontaxis, Estela Laporta, Esther García, Matteo Martinis, Letizia Leocani, Lucia Roselli, Mathias Due Buron, Ana Isabel Guerrero, Ana Zabalza, Nicholas Cummins, Srinivasan Vairavan, Matthew Hotopf, Richard J. B. Dobson, Vaibhav A. Narayan, Maria Libera La Porta, Gloria Dalla Costa, Melinda Magyari, Per Soelberg Sørensen, Carlos Nos, Raquel Bailón, Giancarlo Comi, RADAR-CNS Consortium
2023	A	`conf`	Classifying depression symptom severity: Assessment of speech representations in personalized and generalized machine learning models. INTERSPEECH Edward L. Campbell, Judith Dineley, Pauline Conde, Faith Matcham, Katie M. White, Carolin Oetzmann, Sara Simblett, Stuart Bruce, Amos A. Folarin, Til Wykes, Srinivasan Vairavan, Richard J. B. Dobson, Laura Docío Fernández, Carmen García-Mateo, Vaibhav A. Narayan, Matthew Hotopf, Nicholas Cummins
2023	J	`jnl`	DNAscan2: a versatile, scalable, and user-friendly analysis pipeline for human next-generation sequencing data. Bioinform. Heather Marriott, Renata Kabiljo, Ahmad Al Khleifat, Richard J. B. Dobson, Ammar Al-Chalabi, Alfredo Iacoangeli
2023	J	`jnl`	Discharge summary hospital course summarisation of in patient Electronic Health Record text with clinical concept guided deep pre-trained Transformer models. J. Biomed. Informatics Thomas Searle, Zina M. Ibrahim, James T. Teo, Richard J. B. Dobson
2023	J	`jnl`	Disease Insight through Digital Biomarkers Developed by Remotely Collected Wearables and Smartphone Data. CoRR Zulqarnain Rashid, Amos A. Folarin, Yatharth Ranjan, Pauline Conde, Heet Sankesara, Yuezhou Zhang, Shaoxiong Sun, Callum L. Stewart, Petroula Laiou, Richard J. B. Dobson
2023	J	`jnl`	Identifying depression-related topics in smartphone-collected free-response speech recordings using an automatic speech recognition system and a deep learning topic model. CoRR Yuezhou Zhang, Amos A. Folarin, Judith Dineley, Pauline Conde, Valeria de Angel, Shaoxiong Sun, Yatharth Ranjan, Zulqarnain Rashid, Callum L. Stewart, Petroula Laiou, Heet Sankesara, Linglong Qian, Faith Matcham, Katie M. White, Carolin Oetzmann, Femke Lamers, Sara Siddi, Sara Simblett, Björn W. Schuller, Srinivasan Vairavan, Til Wykes, Josep Maria Haro, Brenda W. J. H. Penninx, Vaibhav A. Narayan, Matthew Hotopf, Richard J. B. Dobson, Nicholas Cummins, RADAR-CNS Consortium
2023	J	`jnl`	Knowledge Enhanced Conditional Imputation for Healthcare Time-series. CoRR Linglong Qian, Zina M. Ibrahim, Hugh Logan Ellis, Ao Zhang, Yuezhou Zhang, Tao Wang, Richard J. B. Dobson
2023	J	`jnl`	Long-term participant retention and engagement patterns in an app and wearable-based multinational remote digital depression study. npj Digit. Medicine Yuezhou Zhang, Abhishek Pratap, Amos A. Folarin, Shaoxiong Sun, Nicholas Cummins, Faith Matcham, Srinivasan Vairavan, Judith Dineley, Yatharth Ranjan, Zulqarnain Rashid, Pauline Conde, Callum L. Stewart, Katie M. White, Carolin Oetzmann, Alina Ivan, Femke Lamers, Sara Siddi, Carla Hernández Rambla, Sara Simblett, Raluca Nica, David C. Mohr, Inez Myin-Germeys, Til Wykes, Josep Maria Haro, Brenda W. J. H. Penninx, Peter Annas, Vaibhav A. Narayan, Matthew Hotopf, Richard J. B. Dobson
2023	A	`conf`	Towards robust paralinguistic assessment for real-world mobile health (mHealth) monitoring: an initial study of reverberation effects on speech. INTERSPEECH Judith Dineley, Ewan Carr, Faith Matcham, Johnny Downs, Richard J. B. Dobson, Thomas F. Quatieri, Nicholas Cummins
2023	J	`jnl`	Towards robust paralinguistic assessment for real-world mobile health (mHealth) monitoring: an initial study of reverberation effects on speech. CoRR Judith Dineley, Ewan Carr, Faith Matcham, Johnny Downs, Richard J. B. Dobson, Thomas F. Quatieri, Nicholas Cummins
2023	J	`jnl`	Trustworthy Data and AI Environments for Clinical Prediction: Application to Crisis-Risk in People With Depression. IEEE J. Biomed. Health Informatics Yamiko Joseph Msosa, Arturas Grauslys, Yifan Zhou, Tao Wang, Iain E. Buchan, Paul Langan, Steven Foster, Michael Walker, Michael Pearson, Amos Folarin, Angus Roberts, Simon Maskell, Richard J. B. Dobson, Cecil Kullu, Dennis Kehoe
2023	—	`conf`	Validating Transformers for Redaction of Text from Electronic Health Records in Real-World Healthcare. ICHI Zeljko Kraljevic, Anthony Shek, Joshua Au Yeung, Ewart Jonathan Sheldon, Haris Shuaib, Mohammad Al-Agil, Xi Bai, Kawsar Noor, Anoop D. Shah, Richard J. B. Dobson, James T. Teo
2023	J	`jnl`	Validating transformers for redaction of text from electronic health records in real-world healthcare. CoRR Zeljko Kraljevic, Anthony Shek, Joshua Au Yeung, Ewart Jonathan Sheldon, Mohammad Al-Agil, Haris Shuaib, Xi Bai, Kawsar Noor, Anoop D. Shah, Richard J. B. Dobson, James T. Teo
2022	J	`jnl`	A Knowledge Distillation Ensemble Framework for Predicting Short- and Long-Term Hospitalization Outcomes From Electronic Health Records Data. IEEE J. Biomed. Health Informatics Zina M. Ibrahim, Daniel Bean, Thomas Searle, Linglong Qian, Honghan Wu, Anthony Shek, Zeljko Kraljevic, James Galloway, Sam Norton, James T. Teo, Richard J. B. Dobson
2022	J	`jnl`	A survey on clinical natural language processing in the United Kingdom from 2007 to 2022. npj Digit. Medicine Honghan Wu, Minhong Wang, Jinge Wu, Farah Francis, Yun-Hsuan Chang, Alex Shavick, Hang Dong, Michael Tin Chung Poon, Natalie K. Fitzpatrick, Adam P. Levine, Luke T. Slater, Alex Handy, Andreas Karwath, Georgios V. Gkoutos, Claude Chelala, Anoop D. Shah, Robert Stewart, Nigel Collier, Beatrice Alex, William Whiteley, Cathie Sudlow, Angus Roberts, Richard J. B. Dobson
2022	J	`jnl`	An assessment of bioinformatics tools for the detection of human endogenous retroviral insertions in short-read genome sequencing data. Frontiers Bioinform. Harry Bowles, Renata Kabiljo, Ahmad Al Khleifat, Ashley Jones, John P. Quinn, Richard J. B. Dobson, Chad M. Swanson, Ammar Al-Chalabi, Alfredo Iacoangeli
2022	J	`jnl`	An implementation framework and a feasibility evaluation of a clinical decision support system for diabetes management in secondary mental healthcare using CogStack. BMC Medical Informatics Decis. Mak. Dipen Patel, Yamiko Msosa, Tao Wang, Omar G. Mustafa, Siobhan Gee, Julie Williams, Angus Roberts, Richard J. B. Dobson, Fiona Gaughran
2022	—	`conf`	CogStack Cohort at TREC 2022 Clinical Trials Track. TREC Jack Wu, Zeljko Kraljevic, Thomas Searle, Daniel Bean, Richard J. B. Dobson
2022	J	`jnl`	Digital health tools for the passive monitoring of depression: a systematic review of methods. npj Digit. Medicine Valeria de Angel, Serena Lewis, Katie M. White, Carolin Oetzmann, Daniel Leightley, Emanuela Oprea, Grace Lavelle, Faith Matcham, Alice Pace, David C. Mohr, Richard J. B. Dobson, Matthew Hotopf
2022	J	`jnl`	Fitbeat: COVID-19 estimation based on wristband heart rate using a contrastive convolutional auto-encoder. Pattern Recognit. Shuo Liu, Jing Han, Estela Laporta Puyal, Spyridon Kontaxis, Shaoxiong Sun, Patrick Locatelli, Judith Dineley, Florian B. Pokorny, Gloria Dalla Costa, Letizia Leocani, Ana Isabel Guerrero, Carlos Nos, Ana Zabalza, Per Soelberg Sørensen, Mathias Buron, Melinda Magyari, Yatharth Ranjan, Zulqarnain Rashid, Pauline Conde, Callum L. Stewart, Amos A. Folarin, Richard J. B. Dobson, Raquel Bailón, Srinivasan Vairavan, Nicholas Cummins, Vaibhav A. Narayan, Matthew Hotopf, Giancarlo Comi, Björn W. Schuller, RADAR-CNS Consortium
2022	J	`jnl`	Foresight - Deep Generative Modelling of Patient Timelines using Electronic Health Records. CoRR Zeljko Kraljevic, Daniel Bean, Anthony Shek, Rebecca Bendayan, Joshua Au Yeung, Alexander Deng, Alfie Baston, Jack Ross, Esther Idowu, James T. Teo, Richard J. B. Dobson
2022	J	`jnl`	GEOexplorer: a webserver for gene expression analysis and visualisation. Nucleic Acids Res. Guy P. Hunt, Luigi Grassi, Rafael Henkin, Fabrizio Smeraldi, Thomas P. Spargo, Renata Kabiljo, Sulev Koks, Zina M. Ibrahim, Richard J. B. Dobson, Ammar Al-Chalabi, Michael R. Barnes, Alfredo Iacoangeli
2022	—	`conf`	Multi-modal Latent-Space Self-alignment for Super-Resolution Cardiac MR Segmentation. STACOM@MICCAI Yu Deng, Yang Wen, Linglong Qian, Esther Puyol-Antón, Hao Xu, Kuberan Pushparajah, Zina M. Ibrahim, Richard J. B. Dobson, Alistair A. Young
2022	J	`jnl`	Patient-centric characterization of multimorbidity trajectories in patients with severe mental illnesses: A temporal bipartite network modeling approach. J. Biomed. Informatics Tao Wang, Rebecca Bendayan, Yamiko Msosa, Megan Pritchard, Angus Roberts, Robert Stewart, Richard J. B. Dobson
2022	J	`jnl`	Predicting Clinical Intent from Free Text Electronic Health Records. CoRR Kawsar Noor, Katherine Smith, Julia Bennett, Jade O'Connell, Jessica Fisk, Monika Hunt, Gary Philippo, Teresa Xu, Simon Knight, Luis Romao, Richard J. B. Dobson, Wai Keong Wong
2022	—	`conf`	RADAR-IoT: An open-source, interoperable and extensible IoT gateway framework for healthcare and beyond. UbiComp/ISWC Adjunct Yatharth Ranjan, Heet Sankesara, Pauline Conde, Jiangeng Chang, Zulqarnain Rashid, Richard J. B. Dobson, Amos A. Folarin
2022	J	`jnl`	Summarisation of Electronic Health Records with Clinical Concept Guidance. CoRR Thomas Searle, Zina M. Ibrahim, James T. Teo, Richard J. B. Dobson
2022	J	`jnl`	The utility of wearable devices in assessing ambulatory impairments of people with multiple sclerosis in free-living conditions. Comput. Methods Programs Biomed. Shaoxiong Sun, Amos A. Folarin, Yuezhou Zhang, Nicholas Cummins, Shuo Liu, Callum L. Stewart, Yatharth Ranjan, Zulqarnain Rashid, Pauline Conde, Petroula Laiou, Heet Sankesara, Gloria Dalla Costa, Letizia Leocani, Per Soelberg Sørensen, Melinda Magyari, Ana Isabel Guerrero, Ana Zabalza, Srinivasan Vairavan, Raquel Bailón, Sara Simblett, Inez Myin-Germeys, Aki Rintala, Til Wykes, Vaibhav A. Narayan, Matthew Hotopf, Giancarlo Comi, Richard J. B. Dobson
2022	J	`jnl`	Transforming and evaluating the UK Biobank to the OMOP Common Data Model for COVID-19 research and beyond. J. Am. Medical Informatics Assoc. Václav Papez, Maxim Moinat, Erica A. Voss, Sofia Bazakou, Anne Van Winzum, Alessia Peviani, Stefan Payralbe, Elena Garcia Lara, Michael Kallfelz, Folkert W. Asselbergs, Daniel Prieto-Alhambra, Richard J. B. Dobson, Spiros C. Denaxas
2021	J	`jnl`	An informatics consult approach for generating clinical evidence for treatment decisions. BMC Medical Informatics Decis. Mak. Alvina Grace Lai, Wai Hoong Chang, Constantinos A. Parisinos, Michail Katsoulis, Ruth M. Blackburn, Anoop D. Shah, Vincent Nguyen, Spiros C. Denaxas, George Davey Smith, Tom R. Gaunt, Krishnarajah Nirantharakumar, Murray P. Cox, Donall Forde, Folkert W. Asselbergs, Steve K. Harris, Sylvia Richardson, Reecha Sofat, Richard J. B. Dobson, Aroon D. Hingorani, Riyaz Patel, Jonathan Sterne, Amitava Banerjee, Alastair K. Denniston, Simon Ball, Neil J. Sebire, Nigam H. Shah, Graham R. Foster, Bryan Williams, Harry Hemingway
2021	J	`jnl`	Cognitive Impairments in Schizophrenia: A Study in a Large Clinical Sample Using Natural Language Processing. Frontiers Digit. Health Aurelie Mascio, Robert Stewart, Riley Botelle, Marcus Williams, Luwaiza Mirza, Rashmi Patel, Thomas Pollak, Richard J. B. Dobson, Angus Roberts
2021	J	`jnl`	DGLinker: flexible knowledge-graph prediction of disease-gene associations. Nucleic Acids Res. Jiajing Hu, Rosalba Lepore, Richard J. B. Dobson, Ammar Al-Chalabi, Daniel Bean, Alfredo Iacoangeli
2021	J	`jnl`	Deployment of a Free-Text Analytics Platform at a UK National Health Service Research Hospital: CogStack at University College London Hospitals. CoRR Kawsar Noor, Lukasz Roguski, Alex Handy, Roman Klapaukh, Amos Folarin, Luis Romao, Joshua Matteson, Nathan Lea, Leilei Zhu, Wai Keong Wong, Anoop D. Shah, Richard J. B. Dobson
2021	J	`jnl`	Ensemble learning for poor prognosis predictions: A case study on SARS-CoV-2. J. Am. Medical Informatics Assoc. Honghan Wu, Huayu Zhang, Andreas Karwath, Zina M. Ibrahim, Ting Shi, Xin Zhang, Kun Wang, Jiaxing Sun, Kevin Dhaliwal, Daniel Bean, Victor Roth Cardoso, Kezhi Li, James T. Teo, Amitava Banerjee, Fang Gao-Smith, Tony Whitehouse, Tonny Veenith, Georgios V. Gkoutos, Xiaodong Wu, Richard J. B. Dobson, Bruce Guthrie
2021	J	`jnl`	Estimating Redundancy in Clinical Text. CoRR Thomas Searle, Zina M. Ibrahim, James T. Teo, Richard J. B. Dobson
2021	J	`jnl`	Estimating redundancy in clinical text. J. Biomed. Informatics Thomas Searle, Zina M. Ibrahim, James T. Teo, Richard J. B. Dobson
2021	J	`jnl`	Fitbeat: COVID-19 Estimation based on Wristband Heart Rate. CoRR Shuo Liu, Jing Han, Estela Laporta Puyal, Spyridon Kontaxis, Shaoxiong Sun, Patrick Locatelli, Judith Dineley, Florian B. Pokorny, Gloria Dalla Costa, Letizia Leocani, Ana Isabel Guerrero, Carlos Nos, Ana Zabalza, Per Soelberg Sørensen, Mathias Buron, Melinda Magyari, Yatharth Ranjan, Zulqarnain Rashid, Pauline Conde, Callum L. Stewart, Amos A. Folarin, Richard J. B. Dobson, Raquel Bailón, Srinivasan Vairavan, Nicholas Cummins, Vaibhav A. Narayan, Matthew Hotopf, Giancarlo Comi, Björn W. Schuller
2021	J	`jnl`	Measuring the effect of Non-Pharmaceutical Interventions (NPIs) on mobility during the COVID-19 pandemic using global mobility data. npj Digit. Medicine Berber T. Snoeijer, Mariska Burger, Shaoxiong Sun, Richard J. B. Dobson, Amos A. Folarin
2021	J	`jnl`	MedGPT: Medical Concept Prediction from Clinical Narratives. CoRR Zeljko Kraljevic, Anthony Shek, Daniel Bean, Rebecca Bendayan, James T. Teo, Richard J. B. Dobson
2021	J	`jnl`	Multi-domain clinical natural language processing with MedCAT: The Medical Concept Annotation Toolkit. Artif. Intell. Medicine Zeljko Kraljevic, Thomas Searle, Anthony Shek, Lukasz Roguski, Kawsar Noor, Daniel Bean, Aurelie Mascio, Leilei Zhu, Amos A. Folarin, Angus Roberts, Rebecca Bendayan, Mark P. Richardson, Robert Stewart, Anoop D. Shah, Wai Keong Wong, Zina M. Ibrahim, James T. Teo, Richard J. B. Dobson
2021	J	`jnl`	Predicting Depressive Symptom Severity through Individuals' Nearby Bluetooth Devices Count Data Collected by Mobile Phones: A Preliminary Longitudinal Study. CoRR Yuezhou Zhang, Amos A. Folarin, Shaoxiong Sun, Nicholas Cummins, Yatharth Ranjan, Zulqarnain Rashid, Pauline Conde, Callum L. Stewart, Petroula Laiou, Faith Matcham, Carolin Oetzmann, Femke Lamers, Sara Siddi, Sara Simblett, Aki Rintala, David C. Mohr, Inez Myin-Germeys, Til Wykes, Josep Maria Haro, Brenda W. J. H. Penninx, Vaibhav A. Narayan, Peter Annas, Matthew Hotopf, Richard J. B. Dobson
2021	J	`jnl`	Real-time clinician text feeds from electronic health records. npj Digit. Medicine James T. Teo, Vlad Dinu, William Bernal, Phil Davidson, Vitaliy Oliynyk, Cormac Breen, Richard D. Barker, Richard J. B. Dobson
2021	A	`conf`	Remote Smartphone-Based Speech Collection: Acceptance and Barriers in Individuals with Major Depressive Disorder. Interspeech Judith Dineley, Grace Lavelle, Daniel Leightley, Faith Matcham, Sara Siddi, Maria Teresa Peñarrubia-María, Katie M. White, Alina Ivan, Carolin Oetzmann, Sara Simblett, Erin Dawe-Lane, Stuart Bruce, Daniel Stahl, Yatharth Ranjan, Zulqarnain Rashid, Pauline Conde, Amos A. Folarin, Josep Maria Haro, Til Wykes, Richard J. B. Dobson, Vaibhav A. Narayan, Matthew Hotopf, Björn W. Schuller, Nicholas Cummins, RADAR-CNS Consortium
2020	J	`jnl`	A Knowledge Distillation Ensemble Framework for Predicting Short and Long-term Hospitalisation Outcomes from Electronic Health Records Data. CoRR Zina M. Ibrahim, Daniel Bean, Thomas Searle, Honghan Wu, Anthony Shek, Zeljko Kraljevic, James Galloway, Sam Norton, James T. Teo, Richard J. B. Dobson
2020	—	`conf`	Comparative Analysis of Text Classification Approaches in Electronic Health Records. BioNLP Aurelie Mascio, Zeljko Kraljevic, Daniel Bean, Richard J. B. Dobson, Robert Stewart, Rebecca Bendayan, Angus Roberts
2020	J	`jnl`	Comparative Analysis of Text Classification Approaches in Electronic Health Records. CoRR Aurelie Mascio, Zeljko Kraljevic, Daniel Bean, Richard J. B. Dobson, Robert Stewart, Rebecca Bendayan, Angus Roberts
2020	A	`conf`	Comparing Natural Language Processing Techniques for Alzheimer's Dementia Prediction in Spontaneous Speech. INTERSPEECH Thomas Searle, Zina M. Ibrahim, Richard J. B. Dobson
2020	J	`jnl`	Comparing Natural Language Processing Techniques for Alzheimer's Dementia Prediction in Spontaneous Speech. CoRR Thomas Searle, Zina M. Ibrahim, Richard J. B. Dobson
2020	—	`conf`	Experimental Evaluation and Development of a Silver-Standard for the MIMIC-III Clinical Coding Dataset. BioNLP Thomas Searle, Zina M. Ibrahim, Richard J. B. Dobson
2020	J	`jnl`	Experimental Evaluation and Development of a Silver-Standard for the MIMIC-III Clinical Coding Dataset. CoRR Thomas Searle, Zina M. Ibrahim, Richard J. B. Dobson
2020	J	`jnl`	Identifying physical health comorbidities in a cohort of individuals with severe mental illness: An application of SemEHR. CoRR Rebecca Bendayan, Honghan Wu, Zeljko Kraljevic, Robert Stewart, Tom Searle, Jaya Chaturvedi, Jayati Das-Munshi, Zina M. Ibrahim, Aurelie Mascio, Angus Roberts, Daniel Bean, Richard J. B. Dobson
2020	J	`jnl`	Measuring the effect of Non-Pharmaceutical Interventions (NPIs) on mobility during the COVID-19 pandemic using global mobility data. CoRR Berber T. Snoeijer, Mariska Burger, Shaoxiong Sun, Richard J. B. Dobson, Amos A. Folarin
2020	A	`conf`	Modeling Rare Interactions in Time Series Data Through Qualitative Change: Application to Outcome Prediction in Intensive Care Units. ECAI Zina M. Ibrahim, Honghan Wu, Richard J. B. Dobson
2020	J	`jnl`	Modeling Rare Interactions in Time Series Data Through Qualitative Change: Application to Outcome Prediction in Intensive Care Units. CoRR Zina M. Ibrahim, Honghan Wu, Richard J. B. Dobson
2020	J	`jnl`	Multi-domain Clinical Natural Language Processing with MedCAT: the Medical Concept Annotation Toolkit. CoRR Zeljko Kraljevic, Thomas Searle, Anthony Shek, Lukasz Roguski, Kawsar Noor, Daniel Bean, Aurelie Mascio, Leilei Zhu, Amos A. Folarin, Angus Roberts, Rebecca Bendayan, Mark P. Richardson, Robert Stewart, Anoop D. Shah, Wai Keong Wong, Zina M. Ibrahim, James T. Teo, Richard J. B. Dobson
2020	J	`jnl`	Natural Language Processing for Mimicking Clinical Trial Recruitment in Critical Care: A Semi-Automated Simulation Based on the LeoPARDS Trial. IEEE J. Biomed. Health Informatics Hegler Correa Tissot, Anoop D. Shah, David Brealey, Steve K. Harris, Ruth Agbakoba, Amos Folarin, Luis Romao, Lukasz Roguski, Richard J. B. Dobson, Folkert W. Asselbergs
2020	J	`jnl`	On classifying sepsis heterogeneity in the ICU: insight using machine learning. J. Am. Medical Informatics Assoc. Zina M. Ibrahim, Honghan Wu, Ahmed Hamoud, Lukas Stappen, Richard J. B. Dobson, Andrea Agarossi
2020	J	`jnl`	The side effect profile of Clozapine in real world data of three large mental hospitals. CoRR Ehtesham Iqbal, Risha Govind, Alvin Romero, Olubanke Dzahini, Matthew T. W. Broadbent, Robert Stewart, Tanya Smith, Chi-Hun Kim, Nomi Werbeloff, Richard J. B. Dobson, Zina M. Ibrahim
2020	J	`jnl`	Using smartphones and wearable devices to monitor behavioural changes during COVID-19. CoRR Shaoxiong Sun, Amos Folarin, Yatharth Ranjan, Zulqarnain Rashid, Pauline Conde, Nicholas Cummins, Faith Matcham, Gloria Dalla Costa, Letizia Leocani, Per Soelberg Sørensen, Mathias Buron, Ana Isabel Guerrero, Ana Zabalza, Brenda W. J. H. Penninx, Femke Lamers, Sara Siddi, Josep Maria Haro, Inez Myin-Germeys, Aki Rintala, Vaibhav A. Narayan, Giancarlo Comi, Matthew Hotopf, Richard J. B. Dobson
2019	—	`conf`	Challenges & solutions in a hybrid mHealth mobile app. UbiComp/ISWC Adjunct Yatharth Ranjan, Amos A. Folarin, Callum L. Stewart, Pauline Conde, Richard J. B. Dobson, Zulqarnain Rashid
2019	J	`jnl`	Combining string and phonetic similarity matching to identify misspelt names of drugs in medical records written in Portuguese. J. Biomed. Semant. Hegler Tissot, Richard J. B. Dobson
2019	J	`jnl`	Contextualised concept embedding for efficiently adapting natural language processing models for phenotype identification. CoRR Honghan Wu, Karen Hodgson, Sue Dyson, Katherine I. Morley, Zina M. Ibrahim, Ehtesham Iqbal, Robert Stewart, Richard J. B. Dobson, Cathie Sudlow
2019	J	`jnl`	DNAscan: personal computer compatible NGS analysis, annotation and visualisation. BMC Bioinform. Alfredo Iacoangeli, Ahmad Al Khleifat, William Sproviero, Aleksey Shatunov, A. R. Jones, S. L. Morgan, Alan Pittman, Richard J. B. Dobson, S. J. Newhouse, Ammar Al-Chalabi
2019	—	`conf`	Learning to Self-Manage by Intelligent Monitoring, Prediction and Intervention. KDH@IJCAI Nirmalie Wiratunga, David Corsar, Kyle Martin, Anjana Wijekoon, Eyad Elyan, Zina M. Ibrahim, Oya Celikutan, Richard J. B. Dobson, Stephen J. McKenna, Jacqui Morris, Annalu Waller, Raed A. Abd-Alhammed, Rami Qahwaji, Ray Chaudhuri
2019	J	`jnl`	MedCAT - Medical Concept Annotation Tool. CoRR Zeljko Kraljevic, Daniel Bean, Aurelie Mascio, Lukasz Roguski, Amos Folarin, Angus Roberts, Rebecca Bendayan, Richard J. B. Dobson
2019	—	`conf`	MedCATTrainer: A Biomedical Free Text Annotation Interface with Active Learning and Research Use Case Specific Customisation. EMNLP/IJCNLP (3) Thomas Searle, Zeljko Kraljevic, Rebecca Bendayan, Daniel Bean, Richard J. B. Dobson
2019	J	`jnl`	MedCATTrainer: A Biomedical Free Text Annotation Interface with Active Learning and Research Use Case Specific Customisation. CoRR Thomas Searle, Zeljko Kraljevic, Rebecca Bendayan, Daniel Bean, Richard J. B. Dobson
2019	J	`jnl`	Natural language processing for disease phenotyping in UK primary care records for research: a pilot study in myocardial infarction and death. J. Biomed. Semant. Anoop D. Shah, Emily Bailey, Tim Williams, Spiros C. Denaxas, Richard J. B. Dobson, Harry Hemingway
2019	J	`jnl`	On Classifying Sepsis Heterogeneity in the ICU: Insight Using Machine Learning. CoRR Zina M. Ibrahim, Honghan Wu, Ahmed Hamoud, Lukas Stappen, Richard J. B. Dobson, Andrea Agarossi
2019	J	`jnl`	UK phenomics platform for developing and validating electronic health record phenotypes: CALIBER. J. Am. Medical Informatics Assoc. Spiros C. Denaxas, Arturo Gonzalez-Izquierdo, Kenan Direk, Natalie K. Fitzpatrick, Ghazaleh Fatemifar, Amitava Banerjee, Richard J. B. Dobson, Laurence J. Howe, Valerie Kuan, R. Tom Lumbers, Laura Pasea, Riyaz S. Patel, Anoop D. Shah, Aroon D. Hingorani, Cathie Sudlow, Harry Hemingway
2018	J	`jnl`	Application of Clinical Concept Embeddings for Heart Failure Prediction in UK EHR data. CoRR Spiros C. Denaxas, Pontus Stenetorp, Sebastian Riedel, Maria Pikoula, Richard J. B. Dobson, Harry Hemingway
2018	J	`jnl`	CogStack - experiences of deploying integrated information retrieval and extraction services in a large National Health Service Foundation Trust hospital. BMC Medical Informatics Decis. Mak. Richard G. Jackson, Ismail Emre Kartoglu, Clive Stringer, Genevieve Gorrell, Angus Roberts, Xingyi Song, Honghan Wu, Asha Agrawal, Kenneth Lui, Tudor Groza, Damian Lewsley, Doug Northwood, Amos Folarin, Robert Stewart, Richard J. B. Dobson
2018	—	`conf`	RADAR-base: A Novel Open Source m-Health Platform. UbiComp/ISWC Adjunct Yatharth Ranjan, Maximilian Kerz, Zulqarnain Rashid, Sebastian Böttcher, Richard J. B. Dobson, Amos A. Folarin
2018	—	`conf`	RADAR-base: Epilepsy Case Study. UbiComp/ISWC Adjunct Zulqarnain Rashid, Callum L. Stewart, Sebastian Böttcher, Yatharth Ranjan, Richard J. B. Dobson, Amos A. Folarin
2018	—	`conf`	RADAR-base: Major Depressive Disorder and Epilepsy Case Studies. UbiComp/ISWC Adjunct Callum L. Stewart, Zulqarnain Rashid, Yatharth Ranjan, Shaoxiong Sun, Richard J. B. Dobson, Amos A. Folarin
2018	J	`jnl`	SemEHR: A general-purpose semantic search system to surface semantic data from clinical notes for tailored care, trial recruitment, and clinical research. J. Am. Medical Informatics Assoc. Honghan Wu, Giulia Toti, Katherine I. Morley, Zina M. Ibrahim, Amos Folarin, Richard G. Jackson, Ismail Emre Kartoglu, Asha Agrawal, Clive Stringer, Darren Gale, Genevieve Gorrell, Angus Roberts, Matthew T. M. Broadbent, Robert Stewart, Richard J. B. Dobson
2017	J	`jnl`	Automated PDF highlighting to support faster curation of literature for Parkinson's and Alzheimer's disease. Database J. Biol. Databases Curation Honghan Wu, Anika Oellrich, Christine Girges, Bernard de Bono, Tim J. P. Hubbard, Richard J. B. Dobson
2017	—	`conf`	Improving RNN with Attention and Embedding for Adverse Drug Reactions. DH Chandra Pandey, Zina M. Ibrahim, Honghan Wu, Ehtesham Iqbal, Richard J. B. Dobson
2017	—	`conf`	Learning Patient Similarity Using Joint Distributed Embeddings of Treatment and Diagnoses. KDH@IJCAI Christopher Ormandy, Zina M. Ibrahim, Richard J. B. Dobson
2017	—	`ed.`	Proceedings of the 2nd International Workshop on Knowledge Discovery in Healthcare Data Co-located with the 26th International Joint Conference on Artificial Intelligence (IJCAI 2017), Melbourne, Australia, August 20, 2017. KDH@IJCAI Zina M. Ibrahim, Honghan Wu, Kerstin Bach, Richard J. B. Dobson, Spiros C. Denaxas, Nirmalie Wiratunga, Stewart Massie, Sadiq Sani
2017	—	`conf`	The psycho-env corpus: research articles annotated for knowledge discovery on correlating mental diseases and environmental factors. KDH@IJCAI Hui Wang, Quan Sun, Anika Oellrich, Honghan Wu, Richard J. B. Dobson
2016	—	`conf`	Category-Driven Association Rule Mining. SGAI Conf. Zina M. Ibrahim, Honghan Wu, Robbie Mallah, Richard J. B. Dobson
2016	—	`conf`	Challenges and opportunities for system biology standards and tools in medical research. ODLS Matthias König, Anika Oellrich, Dagmar Waltemath, Richard J. B. Dobson, Tim J. P. Hubbard, Olaf Wolkenhauer
2016	—	`conf`	Encoding Medication Episodes for Adverse Drug Event Prediction. SGAI Conf. Honghan Wu, Zina M. Ibrahim, Ehtesham Iqbal, Richard J. B. Dobson
2016	—	`conf`	SleepSight: a wearables-based relapse prevention system for schizophrenia. UbiComp Adjunct Maximilian Kerz, Amos Folarin, Nicholas Meyer, Mark Begale, James MacCabe, Richard J. B. Dobson
2016	—	`conf`	The language of mental health problems in social media. CLPsych@HLT-NAACL George Gkotsis, Anika Oellrich, Tim J. P. Hubbard, Richard J. B. Dobson, Maria Liakata, Sumithra Velupillai, Rina Dutta
2015	A	`conf`	A Multi-Agent Platform for Automating the Collection of Patient-Provided Clinical Feedback. AAMAS Zina M. Ibrahim, Lorena Fernández de la Cruz, Argyris K. Stringaris, Robert Goodman, Michael Luck, Richard J. B. Dobson
2015	Misc	`conf`	On Energy-Efficient Computations With Advice. COCOON Hans-Joachim Böckenhauer, Richard J. B. Dobson, Sacha Krug, Kathleen Steinhöfel
2014	J	`jnl`	Protein interaction networks associated with cardiovascular disease and cancer: exploring the effect of bias on shared network properties. Int. J. Data Min. Bioinform. Richard J. B. Dobson, Patricia B. Munroe, Mark J. Caulfield, Mansoor A. S. Saqi
2014	Misc	`conf`	TextHunter - A User Friendly Tool for Extracting Generic Concepts from Free Text in Clinical Research. AMIA Richard G. Jackson, Michael Ball, Rashmi Patel, Richard D. Hayes, Richard J. B. Dobson, Robert Stewart
2014	Misc	`conf`	Towards Using Rule-Based Multi-agent System for the Early Detection of Adverse Drug Reactions. FLAIRS Zina M. Ibrahim, Robbie Mallah, Richard J. B. Dobson
2013	J	`jnl`	BBGRE: brain and body genetic resource exchange. Database J. Biol. Databases Curation Joo Wook Ahn, Abhishek Dixit, Caroline E. Johnston, Caroline M. Ogilvie, David A. Collier, Sarah Curran, Richard J. B. Dobson
2013	C	`conf`	Detecting epistasis in the presence of linkage disequilibrium: A focused comparison. CIBCB Zina M. Ibrahim, Stephen Newhouse, Richard J. B. Dobson
2013	—	`conf`	Sa based power efficient FPGA LUT mapping. GECCO (Companion) Richard J. B. Dobson, Kathleen Steinhöfel
2009	J	`jnl`	An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching. J. Integr. Bioinform. Mansoor A. S. Saqi, Richard J. B. Dobson, Preben Kraben, David A. Hodgson, David L. Wild
2009	J	`jnl`	Global sequence properties for superfamily prediction: a machine learning approach. J. Integr. Bioinform. Richard J. B. Dobson, Patricia B. Munroe, Mark J. Caulfield, Mansoor A. S. Saqi
2008	—	`conf`	Combining Protein-Protein Interaction (PPI) Network and Sequence Attributes for Predicting Hypertension Related Proteins. BIRD Richard J. B. Dobson, Patricia B. Munroe, Charles A. Mein, Mark J. Caulfield, Mansoor A. S. Saqi
2006	J	`jnl`	Predicting deleterious nsSNPs: an analysis of sequence and structural attributes. BMC Bioinform. Richard J. B. Dobson, Patricia B. Munroe, Mark J. Caulfield, Mansoor A. S. Saqi