Richard D. Boyce

59 papers A* 1Misc 11Journal 30Unranked 16

Year	Rank	Type	Title / Venue / Authors
2025	A*	`conf`	Tempo: Helping Data Scientists and Domain Experts Collaboratively Specify Predictive Modeling Tasks. CHI Venkatesh Sivaraman, Anika Vaishampayan, Xiaotong Li, Brian R. Buck, Ziyong Ma, Richard D. Boyce, Adam Perer
2025	J	`jnl`	Tempo: Helping Data Scientists and Domain Experts Collaboratively Specify Predictive Modeling Tasks. CoRR Venkatesh Sivaraman, Anika Vaishampayan, Xiaotong Li, Brian R. Buck, Ziyong Ma, Richard D. Boyce, Adam Perer
2025	J	`jnl`	TempoQL: A Readable, Precise, and Portable Query System for Electronic Health Record Data. CoRR Ziyong Ma, Richard D. Boyce, Adam Perer, Venkatesh Sivaraman
2023	J	`jnl`	An Open-Source Knowledge Graph Ecosystem for the Life Sciences. CoRR Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya Bathla Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin T. Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook E. Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter
2023	J	`jnl`	Causal feature selection using a knowledge graph combining structured knowledge from the biomedical literature and ontologies: A use case studying depression as a risk factor for Alzheimer's disease. J. Biomed. Informatics Scott A. Malec, Sanya Bathla Taneja, Steven M. Albert, C. Elizabeth Shaaban, Helmet T. Karim, Arthur S. Levine, Paul Munro, Tiffany J. Callahan, Richard D. Boyce
2023	J	`jnl`	Developing a Knowledge Graph for Pharmacokinetic Natural Product-Drug Interactions. J. Biomed. Informatics Sanya Bathla Taneja, Tiffany J. Callahan, Mary F. Paine, Sandra L. Kane-Gill, Halil Kilicoglu, Marcin P. Joachimiak, Richard D. Boyce
2023	J	`jnl`	Ontologizing health systems data at scale: making translational discovery a reality. npj Digit. Medicine Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Asiyah Y. Lin, Blake Martin, Nicolas A. Matentzoglu, Daniella Meeker, Justin T. Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingmin Aaron Zhang, Joshua C. Denny, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Melissa A. Haendel, Peter N. Robinson, Lawrence E. Hunter, Michael G. Kahn
2022	J	`jnl`	Coordinated use of Health Level 7 standards to support clinical decision support: Case study with shared decision making and drug-drug interactions. Int. J. Medical Informatics Henrik Thiess, Guilherme Del Fiol, Daniel C. Malone, Ryan Cornia, Max Sibilla, Bryn Rhodes, Richard D. Boyce, Kensaku Kawamoto, Thomas J. Reese
2022	J	`jnl`	Developing a Knowledge Graph Framework for Pharmacokinetic Natural Product-Drug Interactions. CoRR Sanya Bathla Taneja, Tiffany J. Callahan, Mary F. Paine, Sandra L. Kane-Gill, Halil Kilicoglu, Marcin P. Joachimiak, Richard D. Boyce
2022	Misc	`conf`	Developing and Evaluation of Computational Phenotypes of Metastatic Breast Cancer Using All of Us Data. AMIA Chenyu Li, Israel Dilan-Pantojas, Shyam Visweswaran, Michael J. Becich, Xia Jiang, Richard D. Boyce
2022	Misc	`conf`	Evaluation of Shared Decision-Making for Concomitant Warfarin and NSAID Medications using the DDInteract App. AMIA Ainhoa Gomez Lumbreras, Thomas J. Reese, Guilherme Del Fiol, Jason Hurwitz, Kensaku Kawamoto, Mary Brown, Richard D. Boyce, Daniel C. Malone
2022	J	`jnl`	Falls prediction using the nursing home minimum dataset. J. Am. Medical Informatics Assoc. Richard D. Boyce, Olga Kravchenko, Subashan Perera, Jordan F. Karp, Sandra L. Kane-Gill, Charles F. Reynolds, Steven M. Albert, Steven M. Handler
2022	J	`jnl`	Ontologizing Health Systems Data at Scale: Making Translational Discovery a Reality. CoRR Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Melissa A. Haendel, Asiyah Y. Lin, Blake Martin, Nicolas Matentzoglu, Daniella Meeker, Justin T. Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingman A. Zhang, Peter N. Robinson, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Lawrence E. Hunter, Michael G. Kahn
2022	Misc	`conf`	Standardizing Natural Products in Adverse Event Reports with Siamese Recurrent Networks. AMIA Tanupat Boonchalermvichien, Sanya Bathla Taneja, Sandra Clark Karcher, Richard D. Boyce
2021	J	`jnl`	Introducing Information Retrieval for Biomedical Informatics Students. CoRR Sanya Bathla Taneja, Richard D. Boyce, William T. Reynolds, Denis Newman-Griffis
2021	—	`conf`	Overriding Drug-Drug Interaction Alerts in Clinical Decision Support Systems: A Scoping Review. MedInfo Lorenzo Villa Zapata, Vignesh Subbian, Richard D. Boyce, Philip D. Hansten, John R. Horn, Sheila M. Gephart, Andrew Romero, Daniel C. Malone
2021	J	`jnl`	Using computable knowledge mined from the literature to elucidate confounders for EHR-based pharmacovigilance. J. Biomed. Informatics Scott A. Malec, Peng Wei, Elmer V. Bernstam, Richard D. Boyce, Trevor Cohen
2020	Misc	`conf`	Automatically classifying the evidence type of drug-drug interaction research papers as a step toward computer supported evidence curation. AMIA Linh K. Hoang, Richard D. Boyce, Nigel Bosch, Britney Stottlemyer, Mathias Brochhausen, Jodi Schneider
2020	Misc	`conf`	Mapping Dental Diagnostic Concepts to SNOMED CT: A Pilot Study. AMIA Yingci Liu, Smitha Edakalavan, Richard D. Boyce
2020	J	`jnl`	Testing the face validity and inter-rater agreement of a simple approach to drug-drug interaction evidence assessment. J. Biomed. Informatics Amy J. Grizzle, Lisa E. Hines, Daniel C. Malone, Olga Kravchenko, Harry Hochheiser, Richard D. Boyce
2019	—	`conf`	A Proposal for Determining the Evidence Types of Biomedical Documents Using a Drug-drug Interaction Ontology and Machine Learning. AAAI Spring Symposium: Combining Machine Learning with Knowledge Engineering Linh Hoang, Richard D. Boyce, Mathias Brochhausen, Joseph Utecht, Jodi Schneider
2019	—	`conf`	Implementation of Clinical Decision Support Services to Detect Potential Drug-Drug Interaction Using Clinical Quality Language. MedInfo Binh-Phi Nguyen, Thomas J. Reese, Stefan Decker, Daniel C. Malone, Richard D. Boyce, Oya Beyan
2019	J	`jnl`	Open Source Software Sustainability Models: Initial White Paper from the Information Technology for Cancer Research Sustainability and Industry Partnership Work Group. CoRR Y. Ye, Richard D. Boyce, M. K. Davis, Keith O. Elliston, Christos Davatzikos, Andrey Fedorov, Jean-Christophe Fillion-Robin, Ian T. Foster, John R. Gilbertson, Mervi Heiskanen, Juli D. Klemm, Andras Lasso, James V. Miller, M. Morgan, Steve Pieper, Brigitte Raumann, B. Sarachan, G. Savova, Jonathan C. Silverstein, D. Taylor, J. Zelnis, G. Q. Zhang, Michael J. Becich
2018	Misc	`conf`	Adverse Reactions and Drug-Drug Interaction Extraction tracks at the Text Analysis Conference (TAC). AMIA Dina Demner-Fushman, Joseph M. Tonning, Kin Wah Fung, Phong Do, Richard D. Boyce, Kirk Roberts
2018	Misc	`conf`	Developing User Personas to Aid in the Design of a User-Centered Natural Product-Drug Interaction Information Resource for Researchers. AMIA Richard D. Boyce, Isabelle Ragueneau-Majlessi, Jingjing Yu, Jessica Sontheimer, Chris Kinsella, Eric Chou, Mathias Brochhausen, John Judkins, Brandon T. Gufford, Bruce Pinkleton, Rebecca L. Cooney, Mary Paine, Jeannine S. McCune
2018	J	`jnl`	Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse. J. Biomed. Semant. John Judkins, Jessica Tay-Sontheimer, Richard D. Boyce, Mathias Brochhausen
2018	—	`conf`	Overview of the TAC 2018 Drug-Drug Interaction Extraction from Drug Labels Track. TAC Dina Demner-Fushman, Kin Wah Fung, Phong Do, Richard D. Boyce, Travis R. Goodwin
2017	J	`jnl`	Accuracy of an automated knowledge base for identifying drug adverse reactions. J. Biomed. Informatics Erica A. Voss, Richard D. Boyce, Patrick B. Ryan, Johan van der Lei, Peter R. Rijnbeek, Martijn J. Schuemie
2017	J	`jnl`	Automated Screening of Emergency Department Notes for Drug-Associated Bleeding Adverse Events Occurring in Older Adults. Appl. Clin. Inform. Richard D. Boyce, Jeremy Jao, Taylor Miller, Sandra L. Kane-Gill
2017	J	`jnl`	Design and evaluation of a pharmacogenomics information resource for pharmacists. J. Am. Medical Informatics Assoc. Katrina M. Romagnoli, Richard D. Boyce, Philip E. Empey, Yifan Ning, Solomon Adams, Harry Hochheiser
2017	J	`jnl`	Electronic Sleep Stage Classifiers: A Survey and VLSI Design Methodology. IEEE Trans. Biomed. Circuits Syst. Hossein Kassiri, Aditi Chemparathy, Muhammad Tariqus Salam, Richard D. Boyce, Antoine Adamantidis, Roman Genov
2017	—	`conf`	Extraction of Drug-Drug Interactions from Drug Product Labeling Tables. CRI Nikola Milosevic, Anay Gupta, Austin Chen, Steven DeMarco, Joshua P. Le, Jodi Schneider, Yifan Ning, Goran Nenadic, Richard D. Boyce
2017	—	`conf`	Formalizing Evidence Type Definitions for Drug-Drug Interaction Studies to Improve Evidence Base Curation. MedInfo Joseph Utecht, Mathias Brochhausen, John Judkins, Jodi Schneider, Richard D. Boyce
2017	J	`jnl`	Information needs for making clinical recommendations about potential drug-drug interactions: a synthesis of literature review and interviews. BMC Medical Informatics Decis. Mak. Katrina M. Romagnoli, Scott D. Nelson, Lisa Hines, Philip E. Empey, Richard D. Boyce, Harry Hochheiser
2017	J	`jnl`	Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data. J. Biomed. Semant. Richard D. Boyce, Erica A. Voss, Vojtech Huser, Lee Evans, Christian G. Reich, Jon D. Duke, Nicholas P. Tatonetti, Tal Lorberbaum, Michel Dumontier, Manfred Hauben, Magnus Wallberg, Lili Peng, Sara Dempster, Yongqun He, Anthony G. Sena, Vassilis Koutkias, Pantelis Natsiavas, Patrick B. Ryan
2017	Misc	`conf`	Toward a reliable and interoperable public repository for natural product drug interaction study data. AMIA Richard D. Boyce, Isabelle Ragueneau-Majlessi, Jingjing Yu, Jessica Sontheimer, Chris Kinsella, Mathias Brochhausen, John Judkins, Bruce Pinkleton, Rebecca L. Cooney, Mary Paine, Jeannine McCune
2017	—	`conf`	Toward shareable individualized drug interaction alerts. CRI Samuel C. Rosko, Philip Hansten, John R. Horn, Daniel C. Malone, Andrew Romero, Richard D. Boyce
2016	—	`conf`	Adding Evidence Type Representation to DIDEO. ICBO/BioCreative Mathias Brochhausen, Philip E. Empey, Jodi Schneider, William R. Hogan, Richard D. Boyce
2016	J	`jnl`	Bringing clinical pharmacogenomics information to pharmacists: A qualitative study of information needs and resource requirements. Int. J. Medical Informatics Katrina M. Romagnoli, Richard D. Boyce, Philip E. Empey, Solomon Adams, Harry Hochheiser
2015	—	`conf`	Formalizing Knowledge and Evidence about Potential Drug-drug Interactions. BDM2I@ISWC Jodi Schneider, Mathias Brochhausen, Samuel Rosko, Paolo Ciccarese, William R. Hogan, Daniel C. Malone, Yifan Ning, Tim Clark, Richard D. Boyce
2015	Misc	`conf`	OHDSI: An Open-Source Platform for Observational Data Analytics and Collaborative Research. AMIA Jon D. Duke, Frank J. DeFalco, Chris Knoll, Vojtech Huser, Richard D. Boyce, Patrick B. Ryan
2015	J	`jnl`	Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies. BMC Medical Informatics Decis. Mak. Matthias Samwald, José Antonio Miñarro-Giménez, Richard D. Boyce, Robert R. Freimuth, Klaus-Peter Adlassnig, Michel Dumontier
2015	J	`jnl`	Toward a complete dataset of drug-drug interaction information from publicly available sources. J. Biomed. Informatics Serkan Ayvaz, John R. Horn, Oktie Hassanzadeh, Qian Zhu, Johann Stan, Nicholas P. Tatonetti, Santiago Vilar, Mathias Brochhausen, Matthias Samwald, Majid Rastegar-Mojarad, Michel Dumontier, Richard D. Boyce
2014	—	`conf`	Using the Micropublications Ontology and the Open Annotation Data Model to Represent Evidence within a Drug-Drug Interaction Knowledge Base. LISC@ISWC Jodi Schneider, Paolo Ciccarese, Tim Clark, Richard D. Boyce
2014	—	`conf`	Wearable low-latency sleep stage classifier. BioCAS Aditi Chemparathy, Hossein Kassiri, Muhammad Tariqus Salam, Richard D. Boyce, Fadime Bekmambetova, Antoine Adamantidis, Roman Genov
2013	—	`conf`	An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics. MedInfo Matthias Samwald, Robert R. Freimuth, Joanne S. Luciano, Simon M. Lin, Robert L. Powers, M. Scott Marshall, Klaus-Peter Adlassnig, Michel Dumontier, Richard D. Boyce
2013	J	`jnl`	Dynamic enhancement of drug product labels to support drug safety, efficacy, and effectiveness. J. Biomed. Semant. Richard D. Boyce, John R. Horn, Oktie Hassanzadeh, Anita de Waard, Jodi Schneider, Joanne S. Luciano, Majid Rastegar-Mojarad, Maria Liakata
2013	—	`conf`	UWM-TRIADS: Classifying Drug-Drug Interactions with Two-Stage SVM and Post-Processing. SemEval@NAACL-HLT Majid Rastegar-Mojarad, Richard D. Boyce, Rashmi Prasad
2012	J	`jnl`	Emerging practices for mapping and linking life sciences data using RDF - A case series. J. Web Semant. M. Scott Marshall, Richard D. Boyce, Helena F. Deus, Jun Zhao, Egon L. Willighagen, Matthias Samwald, Elgar Pichler, Janos G. Hajagos, Eric Prud'hommeaux, Susie Stephens
2012	—	`ed.`	Proceedings of the Joint Workshop on Semantic Technologies Applied to Biomedical Informatics and Individualized Medicine, Boston, USA, November 12, 2012 SATBI+SWIM Alejandro Rodríguez González, Jyotishman Pathak, Mark D. Wilkinson, Nigam Shah, Robert Stevens, Richard D. Boyce, Ángel García-Crespo
2012	Misc	`conf`	The Influence of Drug Terminologies on the Performance of the NCBO Annotator When Used to Identify Drug Entities in Drug Product Labels. AMIA Robert Guzman, Richard D. Boyce
2012	—	`conf`	Using Natural Language Processing to Extract Drug-Drug Interaction Information from Package Inserts. BioNLP@HLT-NAACL Richard D. Boyce, Gregory Gardner, Henk Harkema
2010	—	`conf`	Leveraging the semantic web and natural language processing to enhance drug-mechanism knowledge in drug product labels. IHI Richard D. Boyce, Henk Harkema, Mike Conway
2009	J	`jnl`	Computing with evidence: Part I: A drug-mechanism evidence taxonomy oriented toward confidence assignment. J. Biomed. Informatics Richard D. Boyce, Carol Collins, John R. Horn, Ira Kalet
2009	J	`jnl`	Computing with evidence: Part II: An evidential approach to predicting metabolic drug-drug interactions. J. Biomed. Informatics Richard D. Boyce, Carol Collins, John R. Horn, Ira Kalet
2009	J	`jnl`	iCODEHOP: a new interactive program for designing COnsensus-DEgenerate Hybrid Oligonucleotide Primers from multiply aligned protein sequences. Nucleic Acids Res. Richard D. Boyce, Parmit K. Chilana, Timothy M. Rose
2007	J	`jnl`	Modeling Drug Mechanism Knowledge Using Evidence and Truth Maintenance. IEEE Trans. Inf. Technol. Biomed. Richard D. Boyce, Carol Collins, John R. Horn, Ira Kalet
2005	Misc	`conf`	Qualitative Pharmacokinetic Modeling of Drugs. AMIA Richard D. Boyce, Carol Collins, John R. Horn, Ira J. Kalet
2003	—	`conf`	Conflation System MBP. CISST Richard D. Boyce, Richard Chase