Richard A. Gibbs

18 papers Journal 18
YearRankTypeTitle / Venue / Authors
2024 J jnl
Empowering personalized pharmacogenomics with generative AI solutions.
J. Am. Medical Informatics Assoc.
Mullai Murugan, Bo Yuan, Eric Venner, Christie M. Ballantyne, Katherine M. Robinson, James C. Coons, Liwen Wang, Philip E. Empey, Richard A. Gibbs
2021 J jnl
Genomic considerations for FHIR®; eMERGE implementation lessons.
J. Biomed. Informatics
Mullai Murugan, Lawrence J. Babb, Casey Overby Taylor, Luke V. Rasmussen, Robert R. Freimuth, Eric Venner, Fei Yan, Victoria Yi, Stephen J. Granite, Hana Zouk, Samuel J. Aronson, Kevin Power, Alexander Fedotov, David R. Crosslin, David Fasel, Gail P. Jarvik, Hakon Hakonarson, Hana Bangash, Iftikhar J. Kullo, John J. Connolly, Jordan G. Nestor, Pedro J. Caraballo, Wei-Qi Wei, Ken Wiley, Heidi L. Rehm, Richard A. Gibbs
2021 J jnl
muCNV: genotyping structural variants for population-level sequencing.
Bioinform.
Goo Jun, Fritz J. Sedlazeck, Qihui Zhu, Adam English, Ginger Metcalf, Hyun Min Kang, Charles Lee, Richard A. Gibbs, Eric Boerwinkle
2019 J jnl
ARBoR: an identity and security solution for clinical reporting.
J. Am. Medical Informatics Assoc.
Eric Venner, Mullai Murugan, Walker Hale, Jordan M. Jones, Shan Lu, Victoria Yi, Richard A. Gibbs
2018 J jnl
Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example.
J. Am. Medical Informatics Assoc.
Samuel J. Aronson, Lawrence J. Babb, Darren C. Ames, Richard A. Gibbs, Eric Venner, John J. Connelly, Keith Marsolo, Chunhua Weng, Marc S. Williams, Andrea L. Hartzler, Wayne H. Liang, James D. Ralston, Emily Beth Devine, Shawn N. Murphy, Christopher G. Chute, Pedro J. Caraballo, Iftikhar J. Kullo, Robert R. Freimuth, Luke V. Rasmussen, Firas H. Wehbe, Josh F. Peterson, Jamie R. Robinson, Ken Wiley, Casey Overby Taylor, eMERGE Network EHRI Working Group
2017 J jnl
SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data.
BMC Bioinform.
Yong Chen, Li Zhao, Yi Wang, Ming Cao, Violet Gelowani, Mingchu Xu, Smriti A. Agrawal, Yumei Li, Stephen P. Daiger, Richard A. Gibbs, Fei Wang, Rui Chen
2016 J jnl
A hybrid computational strategy to address WGS variant analysis in >5000 samples.
BMC Bioinform.
Zhuoyi Huang, Navin Rustagi, Narayanan Veeraraghavan, Andrew Carroll, Richard A. Gibbs, Eric Boerwinkle, Manjunath Gorentla Venkata, Fuli Yu
2016 J jnl
DNAism: exploring genomic datasets on the web with Horizon Charts.
BMC Bioinform.
David Rio Deiros, Richard A. Gibbs, Jeffrey Rogers
2016 J jnl
ITD assembler: an algorithm for internal tandem duplication discovery from short-read sequencing data.
BMC Bioinform.
Navin Rustagi, Oliver A. Hampton, Jie Li, Liu Xi, Richard A. Gibbs, Sharon E. Plon, Marek Kimmel, David A. Wheeler
2016 J jnl
SV-STAT accurately detects structural variation via alignment to reference-based assemblies.
Source Code Biol. Medicine
Caleb F. Davis, Deborah I. Ritter, David A. Wheeler, Hongmei Wang, Yan Ding, Shannon P. Dugan, Matthew N. Bainbridge, Donna M. Muzny, Pulivarthi H. Rao, Tsz-Kwong Man, Sharon E. Plon, Richard A. Gibbs, Ching C. Lau
2015 J jnl
Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR).
Nucleic Acids Res.
Xinxia Peng, Jean Thierry-Mieg, Danielle Thierry-Mieg, Andrew Nishida, Lenore Pipes, Marjan Bozinoski, Matthew J. Thomas, Sara Kelly, Jeffrey M. Weiss, Muthuswamy Raveendran, Donna M. Muzny, Richard A. Gibbs, Jeffrey Rogers, Gary P. Schroth, Michael G. Katze, Christopher E. Mason
2014 J jnl
Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline.
BMC Bioinform.
Jeffrey G. Reid, Andrew Carroll, Narayanan Veeraraghavan, Mahmoud Dahdouli, Andreas Sundquist, Adam C. English, Matthew N. Bainbridge, Simon White, William J. Salerno, Christian Buhay, Fuli Yu, Donna M. Muzny, Richard Daly, Geoff Duyk, Richard A. Gibbs, Eric Boerwinkle
2012 J jnl
An integrative variant analysis suite for whole exome next-generation sequencing data.
BMC Bioinform.
Danny Challis, Jin Yu, Uday S. Evani, Andrew R. Jackson, Sameer Paithankar, Cristian Coarfa, Aleksandar Milosavljevic, Richard A. Gibbs, Fuli Yu
2005 J jnl
Computational and Conformational Evaluation of FTase Alternative Substrates: Insight into a Novel Enzyme Binding Pocket.
J. Chem. Inf. Model.
Brian S. Henriksen, Todd J. Zahn, Jeffrey D. Evanseck, Steven M. Firestine, Richard A. Gibbs
2005 J jnl
SNPdetector: A Software Tool for Sensitive and Accurate SNP Detection.
PLoS Comput. Biol.
Jinghui Zhang, David A. Wheeler, Imtiaz Yakub, Sharon Wei, Raman Sood, William Rowe, Paul P. Liu, Richard A. Gibbs, Kenneth H. Buetow
2000 J jnl
The Human Transcript Database: a catalogue of full length cDNA inserts.
Bioinform.
John Bouck, Michael P. McLeod, Kim Worley, Richard A. Gibbs
1995 J jnl
Accurate determination of DNA in agarose gels using the novel algorithm GelScann(1.0).
Comput. Appl. Biosci.
Michael L. Metzker, Kyle M. Allain, Richard A. Gibbs
1991 J jnl
Distinct distance sets in a graph.
Discret. Math.
Richard A. Gibbs, Peter J. Slater