Richa Agarwala

26 papers A* 4B 1Journal 19Unranked 1
YearRankTypeTitle / Venue / Authors
2021 J jnl
SAUTE: sequence assembly using target enrichment.
BMC Bioinform.
Alexandre Souvorov, Richa Agarwala
2019 J jnl
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res.
Eric W. Sayers, Richa Agarwala, Evan Bolton, J. Rodney Brister, Kathi Canese, Karen Clark, Ryan Connor, Nicolas Fiorini, Kathryn Funk, Timothy Hefferon, J. Bradley Holmes, Sunghwan Kim, Avi Kimchi, Paul A. Kitts, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Aron Marchler-Bauer, Lon Phan, Valerie A. Schneider, Conrad L. Schoch, Kim D. Pruitt, James Ostell
2010 J jnl
High-throughput sequencing of the DBA/2J mouse genome.
BMC Bioinform.
Xusheng Wang, Richa Agarwala, John A. Capra, Zugen Chen, Deanna M. Church, Daniel C. Ciobanu, ZhengSheng Li, Lu Lu, Khyobeni Mozhui, Megan K. Mulligan, Stanley F. Nelson, Katherine S. Pollard, William Taylor, Donald B. Thomason, Robert W. Williams
2009 J jnl
The National Center for Biotechnology Information's Protein Clusters Database.
Nucleic Acids Res.
William Klimke, Richa Agarwala, Azat Badretdin, Slava Chetvernin, Stacy Ciufo, Boris Fedorov, Boris Kiryutin, Kathleen O'Neill, Wolfgang Resch, Sergei Resenchuk, Susan Schafer, Igor Tolstoy, Tatiana A. Tatusova
2008 J jnl
Database indexing for production MegaBLAST searches.
Bioinform.
Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer
2008 J jnl
Database indexing for production MegaBLAST searches.
Bioinform.
Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer
2007 J jnl
COBALT: constraint-based alignment tool for multiple protein sequences.
Bioinform.
Jason S. Papadopoulos, Richa Agarwala
2007 J jnl
Improved BLAST searches using longer words for protein seeding.
Bioinform.
Sergey A. Shiryev, Jason S. Papadopoulos, Alejandro A. Schäffer, Richa Agarwala
2007 J jnl
rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control.
Bioinform.
Alejandro A. Schäffer, Edward Stallknecht Rice, William J. Cook, Richa Agarwala
2006 J jnl
A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences.
J. Comput. Biol.
Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala
2006 J jnl
WindowMasker: window-based masker for sequenced genomes.
Bioinform.
Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala
2000 J jnl
Inverse inbreeding coefficient problems with an application to linkage analysis of recessive diseases in inbred populations.
Discret. Appl. Math.
Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer
1999 A* conf
Inverse Inbreeding Coefficient Problems with an Application to Linkage Analysis of Recessive Diseases in Inbred Populations.
SODA
Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer
1999 J jnl
On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics).
SIAM J. Comput.
Richa Agarwala, Vineet Bafna, Martin Farach, Mike Paterson, Mikkel Thorup
1997 A* conf
Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model.
SODA
Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, Steven Skiena
1997 J jnl
Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model.
J. Comput. Biol.
Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Sridhar Hannenhalli, Martin Farach, S. Muthukrishnan, Steven Skiena
1997 B conf
Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model.
RECOMB
Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, S. Muthukrishnan, Steven Skiena
1996 A* conf
On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics).
SODA
Richa Agarwala, Vineet Bafna, Martin Farach, Babu O. Narayanan, Mike Paterson, Mikkel Thorup
1996 J jnl
Simple Algorithms for Perfect Phylogeny and Triangulating Colored Graphs.
Int. J. Found. Comput. Sci.
Richa Agarwala, David Fernández-Baca
1996 J jnl
Weighted Multidimensional Search and Its Application to Convex Optimization.
SIAM J. Comput.
Richa Agarwala, David Fernández-Baca
1995 J jnl
Fast Algorithms for Inferring Evolutionary Trees.
J. Comput. Biol.
Richa Agarwala, David Fernández-Baca, Giora Slutzki
1995 J jnl
Weighted Search in the Plane.
Inf. Process. Lett.
Richa Agarwala, David Fernández-Baca
1994 J jnl
A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed.
SIAM J. Comput.
Richa Agarwala, David Fernández-Baca
1994 — —
Algorithms for weighted multidimensional search and perfect phylogeny.
Richa Agarwala
1993 A* conf
A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed
FOCS
Richa Agarwala, David Fernández-Baca
1992 — conf
Solving the Lagrangian Dual when the Number of Constraints is Fixed.
FSTTCS
Richa Agarwala, David Fernández-Baca