Rhiju Das - RankMe

18 papers Journal 17Unranked 1

Year	Rank	Type	Title / Venue / Authors
2022	J	`jnl`	Deep learning models for predicting RNA degradation via dual crowdsourcing. Nat. Mac. Intell. Hannah K. Wayment-Steele, Wipapat Kladwang, Andrew M. Watkins, Do Soon Kim, Bojan Tunguz, Walter Reade, Maggie Demkin, Jonathan Romano, Roger Wellington-Oguri, John J. Nicol, Jiayang Gao, Kazuki Onodera, Kazuki Fujikawa, Hanfei Mao, Gilles Vandewiele, Michele Tinti, Bram Steenwinckel, Takuya Ito, Taiga Noumi, Shujun He, Keiichiro Ishi, Youhan Lee, Fatih Öztürk, King Yuen Chiu, Emin Öztürk, Karim Amer, Mohamed Fares, Rhiju Das
2021	J	`jnl`	Predictive models of RNA degradation through dual crowdsourcing. CoRR Hannah K. Wayment-Steele, Wipapat Kladwang, Andrew M. Watkins, Do Soon Kim, Bojan Tunguz, Walter Reade, Maggie Demkin, Jonathan Romano, Roger Wellington-Oguri, John J. Nicol, Jiayang Gao, Kazuki Onodera, Kazuki Fujikawa, Hanfei Mao, Gilles Vandewiele, Michele Tinti, Bram Steenwinckel, Takuya Ito, Taiga Noumi, Shujun He, Keiichiro Ishi, Youhan Lee, Fatih Öztürk, Anthony Chiu, Emin Öztürk, Karim Amer, Mohamed Fares, Eterna Participants, Rhiju Das
2019	J	`jnl`	EternaBrain: Automated RNA design through move sets and strategies from an Internet-scale RNA videogame. PLoS Comput. Biol. Rohan V. Koodli, Benjamin Keep, Katherine R. Coppess, Fernando Portela, Rhiju Das
2019	J	`jnl`	RNA 3D structure prediction guided by independent folding of homologous sequences. BMC Bioinform. Marcin Magnus, Kalli Kappel, Rhiju Das, Janusz M. Bujnicki
2018	J	`jnl`	SentRNA: Improving computational RNA design by incorporating a prior of human design strategies. CoRR Jade Shi, Rhiju Das, Vijay S. Pande
2018	J	`jnl`	Updates to the RNA mapping database (RMDB), version 2. Nucleic Acids Res. Joseph D. Yesselman, Siqi Tian, Xin Liu, Lei Shi, Jin Billy Li, Rhiju Das
2017	J	`jnl`	Primerize-2D: automated primer design for RNA multidimensional chemical mapping. Bioinform. Siqi Tian, Rhiju Das
2015	J	`jnl`	Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles. Bioinform. Seungmyung Lee, Hanjoo Kim, Siqi Tian, Taehoon Lee, Sungroh Yoon, Rhiju Das
2015	J	`jnl`	Primerize: automated primer assembly for transcribing non-coding RNA domains. Nucleic Acids Res. Siqi Tian, Joseph D. Yesselman, Pablo Cordero, Rhiju Das
2015	J	`jnl`	RNA-Redesign: a web server for fixed-backbone 3D design of RNA. Nucleic Acids Res. Joseph D. Yesselman, Rhiju Das
2015	J	`jnl`	Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis. PLoS Comput. Biol. Pablo Cordero, Rhiju Das
2014	J	`jnl`	Blind Predictions of DNA and RNA Tweezers Experiments with Force and Torque. PLoS Comput. Biol. Fang-Chieh Chou, Jan Lipfert, Rhiju Das
2013	J	`jnl`	HiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresis. Nucleic Acids Res. Hanjoo Kim, Pablo Cordero, Rhiju Das, Sungroh Yoon
2012	J	`jnl`	An RNA Mapping DataBase for curating RNA structure mapping experiments. Bioinform. Pablo Cordero, Julius B. Lucks, Rhiju Das
2011	J	`jnl`	HiTRACE: high-throughput robust analysis for capillary electrophoresis. Bioinform. Sungroh Yoon, Jinkyu Kim, Justine Hum, Hanjoo Kim, Seunghyun Park, Wipapat Kladwang, Rhiju Das
2011	J	`jnl`	The Stanford RNA Mapping Database for sharing and visualizing RNA structure mapping experiments CoRR Pablo Cordero, Julius B. Lucks, Rhiju Das
2009	J	`jnl`	A robust peak detection method for RNA structure inference by high-throughput contact mapping. Bioinform. Jinkyu Kim, Seunghak Yu, Byonghyo Shim, Hanjoo Kim, Hyeyoung Min, Eui-Young Chung, Rhiju Das, Sungroh Yoon
2007	—	`conf`	Feature Selection Methods for Improving Protein Structure Prediction with Rosetta. NIPS Ben Blum, Michael I. Jordan, David E. Kim, Rhiju Das, Philip Bradley, David Baker