Renzhi Cao

36 papers B 2Journal 29Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
A Diversified Population Migration-Based Multiobjective Evolutionary Algorithm for Dynamic Community Detection.
IEEE Trans. Emerg. Top. Comput. Intell.
Lei Zhang, Chaofan Qin, Haipeng Yang, Zishan Xiong, Renzhi Cao, Fan Cheng
2025 — conf
Advancing Protein-Ligand Binding Site Prediction with 3D Instance Segmentation Techniques.
CAI
Esha Rajesh Gavali, Jie Hou, Renzhi Cao, Dong Si
2025 J jnl
AnglesRefine: Refinement of 3D Protein Structures Using Transformer Based on Torsion Angles.
IEEE Trans. Comput. Biol. Bioinform.
Lei Zhang, JunYong Zhu, Sheng Wang, Jie Hou, Dong Si, Renzhi Cao
2025 J jnl
Fair Influence Maximization in Social Networks: A Community-Based Evolutionary Algorithm.
IEEE Trans. Emerg. Top. Comput.
Kaicong Ma, Xinxiang Xu, Haipeng Yang, Renzhi Cao, Lei Zhang
2025 J jnl
GOBoost: leveraging long-tail gene ontology terms for accurate protein function prediction.
Bioinform.
Lei Zhang, Yang Wang, Xiao Chen, Jie Hou, Dong Si, Rui Ding, Bo Jiang, Hailey Ledenko, Renzhi Cao
2025 — conf
Geometric Deep Learning for Multiple Conformation Generation from Electron Density Images.
CAI
Saurav Jayakumar, Jie Hou, Renzhi Cao, Dong Si
2024 J jnl
A Node Classification-Based Multiobjective Evolutionary Algorithm for Community Detection in Complex Networks.
IEEE Trans. Comput. Soc. Syst.
Haipeng Yang, Bin Li, Fan Cheng, Peng Zhou, Renzhi Cao, Lei Zhang
2024 J jnl
Enhancing cryo-EM structure prediction with DeepTracer and AlphaFold2 integration.
Briefings Bioinform.
Jason Chen, Ayisha Zia, Albert Luo, Hanze Meng, Fengbin Wang, Jie Hou, Renzhi Cao, Dong Si
2024 J jnl
Evolutionary Multitasking Local Community Detection on Attributed Networks.
IEEE Trans. Emerg. Top. Comput. Intell.
Lei Zhang, Bin Li, Li Ni, Haipeng Yang, Renzhi Cao
2024 J jnl
Integrated bulk and single-cell transcriptomes reveal pyroptotic signature in prognosis and therapeutic options of hepatocellular carcinoma by combining deep learning.
Briefings Bioinform.
Yang Liu, Hanlin Li, Tianyu Zeng, Yang Wang, Hongqi Zhang, Ying Wan, Zheng Shi, Renzhi Cao, Hua Tang
2023 J jnl
ComplexQA: a deep graph learning approach for protein complex structure assessment.
Briefings Bioinform.
Lei Zhang, Sheng Wang, Jie Hou, Dong Si, JunYong Zhu, Renzhi Cao
2023 J jnl
Fair Influence Maximization in Social Networks: A Community-Based Evolutionary Algorithm.
CoRR
Kaicong Ma, Xinxiang Xu, Haipeng Yang, Renzhi Cao, Lei Zhang
2023 J jnl
Fast and automated protein-DNA/RNA macromolecular complex modeling from cryo-EM maps.
Briefings Bioinform.
Andrew Nakamura, Hanze Meng, Minglei Zhao, Fengbin Wang, Jie Hou, Renzhi Cao, Dong Si
2023 J jnl
Multi-Objective Optimization of Local Overlapping Community Detection: A Formal Model and Novel Evolutionary Algorithm.
IEEE Trans. Netw. Sci. Eng.
Lei Zhang, Bin Li, Haipeng Yang, Fan Cheng, Cheng Zhang, Renzhi Cao
2022 — conf
Deep graph learning to estimate protein model quality using structural constraints from multiple sequence alignments.
BCB
Mahdi Rahbar, Rahul Kumar Chauhan, Pankil Nimeshbhai Shah, Renzhi Cao, Dong Si, Jie Hou
2022 J jnl
ZoomQA: residue-level protein model accuracy estimation with machine learning on sequential and 3D structural features.
Briefings Bioinform.
Kyle Hippe, Cade Lilley, Joshua William Berkenpas, Ciri Chandana Pocha, Kiyomi Kishaba, Hui Ding, Jie Hou, Dong Si, Renzhi Cao
2021 J jnl
Application of artificial intelligence and machine learning for COVID-19 drug discovery and vaccine design.
Briefings Bioinform.
Hao Lv, Lei Shi, Joshua William Berkenpas, Fu-Ying Dao, Hasan Zulfiqar, Hui Ding, Yang Zhang, Liming Yang, Renzhi Cao
2021 J jnl
Artificial Intelligence Advances for De Novo Molecular Structure Modeling in Cryo-EM.
CoRR
Dong Si, Andrew Nakamura, Runbang Tang, Haowen Guan, Jie Hou, Ammaar Firozi, Renzhi Cao, Kyle Hippe, Minglei Zhao
2020 B conf
Educational Application of Big Data Research: A Comparison of China and US.
SERVICES
Ting Zhang, Clara Elizabeth, Renzhi Cao
2020 J jnl
High Definition image classification in Geoscience using Machine Learning.
CoRR
Yajun An, Zachary Golden, Tarka Wilcox, Renzhi Cao
2020 B conf
Predicting the DJIA with News Headlines and Historic Data Using Hybrid Genetic Algorithm/Support Vector Regression and BERT.
BigData
Benjamin Warner, Aaron Crook, Renzhi Cao
2020 J jnl
TopQA: a topological representation for single-model protein quality assessment with machine learning.
Int. J. Comput. Biol. Drug Des.
John Smith, Matthew Conover, Natalie Stephenson, Jesse Eickholt, Dong Si, Miao Sun, Renzhi Cao
2018 — conf
EMNets: A Convolutional Autoencoder for Protein Surface Retrieval Based on Cryo-Electron Microscopy Imaging.
BCB
Jingjing Yang, Renzhi Cao, Dong Si
2017 J jnl
ProLanGO: Protein Function Prediction Using Neural~Machine Translation Based on a Recurrent Neural Network.
CoRR
Renzhi Cao, Colton Freitas, Leong Chan, Miao Sun, Haiqing Jiang, Zhangxin Chen
2017 J jnl
QAcon: single model quality assessment using protein structural and contact information with machine learning techniques.
Bioinform.
Renzhi Cao, Badri Adhikari, Debswapna Bhattacharya, Miao Sun, Jie Hou, Jianlin Cheng
2016 J jnl
3Drefine: an interactive web server for efficient protein structure refinement.
Nucleic Acids Res.
Debswapna Bhattacharya, Jackson Nowotny, Renzhi Cao, Jianlin Cheng
2016 J jnl
DeepQA: Improving the estimation of single protein model quality with deep belief networks.
CoRR
Renzhi Cao, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
2016 J jnl
DeepQA: improving the estimation of single protein model quality with deep belief networks.
BMC Bioinform.
Renzhi Cao, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
2016 J jnl
Evaluation of Protein Structural Models Using Random Forests.
CoRR
Renzhi Cao, Taeho Jo, Jianlin Cheng
2016 J jnl
UniCon3D:
Bioinform.
Debswapna Bhattacharya, Renzhi Cao, Jianlin Cheng
2015 J jnl
A large-scale conformation sampling and evaluation server for protein tertiary structure prediction and its assessment in CASP11.
BMC Bioinform.
Jilong Li, Renzhi Cao, Jianlin Cheng
2015 J jnl
Iterative reconstruction of three-dimensional models of human chromosomes from chromosomal contact data.
BMC Bioinform.
Jackson Nowotny, Sharif Ahmed, Lingfei Xu, Oluwatosin Oluwadare, Hannah Chen, Noelan Hensley, Tuan Trieu, Renzhi Cao, Jianlin Cheng
2015 J jnl
Large-scale model quality assessment for improving protein tertiary structure prediction.
Bioinform.
Renzhi Cao, Debswapna Bhattacharya, Badri Adhikari, Jilong Li, Jianlin Cheng
2015 — conf
MULTICOM: a large-scale conformation sampling and evaluation server for protein tertiary structure prediction.
BCB
Jilong Li, Renzhi Cao, Jianlin Cheng
2014 J jnl
SMOQ: a tool for predicting the absolute residue-specific quality of a single protein model with support vector machines.
BMC Bioinform.
Renzhi Cao, Zheng Wang, Yiheng Wang, Jianlin Cheng
2013 J jnl
Three-Level Prediction of Protein Function by Combining Profile-Sequence Search, Profile-Profile Search, and Domain Co-Occurrence Networks.
BMC Bioinform.
Zheng Wang, Renzhi Cao, Jianlin Cheng