Rengül Çetin-Atalay

42 papers B 1C 1Misc 2Journal 22Unranked 16

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	An integrative framework for clinical diagnosis and knowledge discovery from exome sequencing data. Comput. Biol. Medicine Mona Shojaei, Navid Mohammadvand, Tunca Dogan, Can Alkan, Rengül Çetin-Atalay, Aybar C. Acar
2023	J	`jnl`	Human Hepatocellular Carcinoma Classification from H&E Stained Histopathology Images with 3D Convolutional Neural Networks and Focal Loss Function. J. Imaging Umut Çinar, Rengül Çetin-Atalay, Yasemin Yardimci Çetin
2023	J	`jnl`	Transfer learning for drug-target interaction prediction. Bioinform. Alperen Dalkiran, Ahmet Atakan, Ahmet Süreyya Rifaioglu, Maria Jesus Martin, Rengül Çetin-Atalay, Aybar C. Acar, Tunca Dogan, Volkan Atalay
2022	J	`jnl`	SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins. Bioinform. Gökhan Özsari, Ahmet Süreyya Rifaioglu, Ahmet Atakan, Tunca Dogan, Maria Jesus Martin, Rengül Çetin-Atalay, Volkan Atalay
2021	J	`jnl`	MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery. Bioinform. Ahmet Süreyya Rifaioglu, Rengül Çetin-Atalay, Deniz Cansen Kahraman, Tunca Dogan, Maria Jesus Martin, Volkan Atalay
2021	J	`jnl`	Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases. PLoS Comput. Biol. Tunca Dogan, Ece Akhan Güzelcan, Marcus Baumann, Altay Koyas, Heval Atas, Ian R. Baxendale, Maria Jesus Martin, Rengül Çetin-Atalay
2020	J	`jnl`	iBioProVis: interactive visualization and analysis of compound bioactivity space. Bioinform. Ataberk Donmez, Ahmet Süreyya Rifaioglu, Aybar C. Acar, Tunca Dogan, Rengül Çetin-Atalay, Volkan Atalay
2020	J	`jnl`	iBioProVis: interactive visualization and analysis of compound bioactivity space. Bioinform. Ataberk Donmez, Ahmet Süreyya Rifaioglu, Aybar C. Acar, Tunca Dogan, Rengül Çetin-Atalay, Volkan Atalay, Wren Jonathan
2019	J	`jnl`	A visual object tracking benchmark for cell motility in time-lapse imaging. Signal Image Video Process. H. Seckin Demir, A. Enis Çetin, Rengül Çetin-Atalay
2019	J	`jnl`	DeepDistance: A Multi-task Deep Regression Model for Cell Detection in Inverted Microscopy Images. CoRR Can Fahrettin Koyuncu, Gozde Nur Gunesli, Rengül Çetin-Atalay, Cigdem Gunduz Demir
2019	J	`jnl`	Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases. Briefings Bioinform. Ahmet Süreyya Rifaioglu, Heval Atas, Maria Jesus Martin, Rengül Çetin-Atalay, Volkan Atalay, Tunca Dogan
2019	J	`jnl`	Synthesis, anticancer activity, toxicity evaluation and molecular docking studies of novel phenylaminopyrimidine - (thio)urea hybrids as potential kinase inhibitors. Comput. Biol. Chem. Asli Türe, Deniz Cansen Kahraman, Rengül Çetin-Atalay, Sinem Helvacioglu, Mohammad Charehsaz, Ilkay Küçükgüzel
2018	J	`jnl`	Contrast Enhancement of Microscopy Images Using Image Phase Information. IEEE Access Serdar Çakir, Deniz Cansen Kahraman, Rengül Çetin-Atalay, A. Enis Çetin
2018	J	`jnl`	ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature. BMC Bioinform. Alperen Dalkiran, Ahmet Süreyya Rifaioglu, Maria Jesus Martin, Rengül Çetin-Atalay, Volkan Atalay, Tunca Dogan
2018	J	`jnl`	EClerize: A customized force-directed graph drawing algorithm for biological graphs with EC attributes. J. Bioinform. Comput. Biol. Hasan Fehmi Danaci, Rengül Çetin-Atalay, Volkan Atalay
2017	—	`conf`	Automated cancer stem cell recognition in H and E stained tissue using convolutional neural networks and color deconvolution. Digital Pathology Wolfgang Aichinger, Sebastian Krappe, A. Enis Çetin, Rengül Çetin-Atalay, Aysegül Üner, Michaela Benz, Thomas Wittenberg, Marc Stamminger, Christian Münzenmayer
2017	—	`conf`	Classification of Hematoxylin and Eosin Images Using Local Binary Patterns and 1-D SIFT Algorithm. IWCIM@EUSIPCO Oguzhan Oguz, A. Enis Çetin, Rengül Çetin-Atalay
2016	—	`conf`	Classification of human carcinoma cells using multispectral imagery. Digital Pathology Umut Çinar, Yasemin Yardimci Çetin, Rengül Çetin-Atalay, A. Enis Çetin
2016	—	`conf`	Mixture of learners for cancer stem cell detection using CD13 and H and E stained images. Digital Pathology Oguzhan Oguz, Cem Emre Akbas, Maen Mallah, Kasim Tasdemir, Ece Akhan Güzelcan, Christian Münzenmayer, Thomas Wittenberg, Aysegül Üner, A. Enis Çetin, Rengül Çetin-Atalay
2016	J	`jnl`	Phase and TV Based Convex Sets for Blind Deconvolution of Microscopic Images. IEEE J. Sel. Top. Signal Process. Mohammad Tofighi, Onur Yorulmaz, Kivanç Köse, Deniz Cansen Yildirim, Rengül Çetin-Atalay, A. Enis Çetin
2015	—	`conf`	Detection of Cancer Stem Cells in microscopic images by using region covariance and codifference method. IWCIM Oguzhan Oguz, Christian Münzenmayer, Thomas Wittenberg, Aysegul Uner, A. Enis Çetin, Rengül Çetin-Atalay
2015	B	`conf`	Multi-resolution super-pixels and their applications on fluorescent mesenchymal stem cells images using 1-D SIFT merging. ICIP Onur Yorulmaz, Oguzhan Oguz, Ece Akhan, Donus Tuncel, Rengül Çetin-Atalay, A. Enis Çetin
2015	—	`conf`	Multiplication-free Neural Networks. SIU Cem Emre Akbas, Alican Bozkurt, A. Enis Çetin, Rengül Çetin-Atalay, Aysegul Uner
2015	—	`conf`	Wavelet merged multi-resolution super-pixels and their applications on fluorescent MSC images. SIU Onur Yorulmaz, Oguzhan Oguz, Ece Akhan, Donus Tuncel, Rengül Çetin-Atalay, A. Enis Çetin
2014	—	`conf`	A supervised learning model for live cell segmentation. SIU Can Fahrettin Koyuncu, Irem Durmaz, Rengül Çetin-Atalay, Cigdem Gunduz Demir
2014	—	`conf`	Applications of p53 interactome analysis to personalised drug discovery. IWBBIO Michelle Hussain, Benjamin Stutchbury, Kun Tian, Rengül Çetin-Atalay, Jean-Marc Schwartz, Marija Krstic-Demonacos
2014	—	`conf`	Discriminative Modeling of Cell Signaling as Bayesian Networks. IWBBIO Ayse Gul Yaman, Aybar C. Acar, Volkan Atalay, Rengül Çetin-Atalay
2013	Misc	`conf`	A multiplication-free framework for signal processing and applications in biomedical image analysis. ICASSP Alexander Suhre, Furkan Keskin, Tulin Ersahin, Rengül Çetin-Atalay, Rashid Ansari, A. Enis Çetin
2013	J	`jnl`	Attributed Relational Graphs for Cell Nucleus Segmentation in Fluorescence Microscopy Images. IEEE Trans. Medical Imaging Salim Arslan, Tulin Ersahin, Rengül Çetin-Atalay, Cigdem Gunduz Demir
2012	Misc	`conf`	Carcinoma cell line discrimination in microscopic images using unbalanced wavelets. CISS Furkan Keskin, Alexander Suhre, Tulin Ersahin, Rengül Çetin-Atalay, A. Enis Çetin
2012	C	`conf`	Microscopic image classification via ℂWT-based covariance descriptors using Kullback-Leibler distance. ISCAS Furkan Keskin, A. Enis Çetin, Tulin Ersahin, Rengül Çetin-Atalay
2011	—	`conf`	G-Network Modelling Based Abnormal Pathway Detection in Gene Regulatory Networks. ISCIS Haseong Kim, Rengül Çetin-Atalay, Erol Gelenbe
2011	—	`conf`	Microscopic image classification using sparsity in a transform domain and Bayesian learning. EUSIPCO Alexander Suhre, Tulin Ersahin, Rengül Çetin-Atalay, A. Enis Çetin
2010	J	`jnl`	Bi-k-bi clustering: mining large scale gene expression data using two-level biclustering. Int. J. Data Min. Bioinform. Levent Çarkacioglu, Rengül Çetin-Atalay, Özlen Konu, Volkan Atalay, Tolga Can
2010	—	`conf`	Data and Model Driven Hybrid Approach to Activity Scoring of Cyclic Pathways. ISCIS Zerrin Isik, Volkan Atalay, Cevdet Aykanat, Rengül Çetin-Atalay
2010	—	`conf`	Evaluation of Signaling Cascades Based on the Weights from Microarray and ChIP-seq Data. MLSB Zerrin Isik, Volkan Atalay, Rengül Çetin-Atalay
2008	J	`jnl`	Subsequence-based feature map for protein function classification. Comput. Biol. Chem. Ömer Sinan Saraç, Özge Gürsoy-Yüzügüllü, Rengül Çetin-Atalay, Volkan Atalay
2005	J	`jnl`	Implicit motif distribution based hybrid computational kernel for sequence classification. Bioinform. Volkan Atalay, Rengül Çetin-Atalay
2004	J	`jnl`	An ontology for collaborative construction and analysis of cellular pathways. Bioinform. Emek Demir, Ozgun Babur, Ugur Dogrusöz, Attila Gürsoy, A. Ayaz, Gürcan Gülesir, Gurkan Nisanci, Rengül Çetin-Atalay
2003	—	`conf`	Application of Data Mining Techniques to Protein-Protein Interaction Prediction. ISCIS A. Kocatas, Attila Gürsoy, Rengül Çetin-Atalay
2003	—	`conf`	Prediction of Protein Subcellular Localization Based on Primary Sequence Data. ISCIS Mert Özarar, Volkan Atalay, Rengül Çetin-Atalay
2002	J	`jnl`	PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways. Bioinform. Emek Demir, Ozgun Babur, Ugur Dogrusöz, Attila Gürsoy, Gurkan Nisanci, Rengül Çetin-Atalay, Mehmet Ozturk