Remo Rohs

13 papers A 1Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
DNAdesign: feature-aware
Bioinform.
Yingfei Wang, Jinsen Li, Tsu-Pei Chiu, Nicolas Gompel, Remo Rohs
2024 J jnl
Structure-Based Drug Design with a Deep Hierarchical Generative Model.
J. Chem. Inf. Model.
Jesse A. Weller, Remo Rohs
2022 J jnl
Top-Down Crawl: a method for the ultra-rapid and motif-free alignment of sequences with associated binding metrics.
Bioinform.
Brendon H. Cooper, Tsu-Pei Chiu, Remo Rohs
2020 J jnl
DNAproDB: an expanded database and web-based tool for structural analysis of DNA?protein complexes.
Nucleic Acids Res.
Jared M. Sagendorf, Nicholas Markarian, Helen M. Berman, Remo Rohs
2020 J jnl
TFBSshape: an expanded motif database for DNA shape features of transcription factor binding sites.
Nucleic Acids Res.
Tsu-Pei Chiu, Beibei Xin, Nicholas Markarian, Yingfei Wang, Remo Rohs
2018 A conf
Deep Graph Embedding for Ranking Optimization in E-commerce.
CIKM
Chen Chu, Zhao Li, Beibei Xin, Fengchao Peng, Chuanren Liu, Remo Rohs, Qiong Luo, Jingren Zhou
2017 J jnl
DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.
Bioinform.
Wenxiu Ma, Lin Yang, Remo Rohs, William Stafford Noble
2017 J jnl
DNAproDB: an interactive tool for structural analysis of DNA-protein complexes.
Nucleic Acids Res.
Jared M. Sagendorf, Helen M. Berman, Remo Rohs
2016 J jnl
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
Bioinform.
Tsu-Pei Chiu, Federico Comoglio, Tianyin Zhou, Lin Yang, Renato Paro, Remo Rohs
2015 J jnl
GBshape: a genome browser database for DNA shape annotations.
Nucleic Acids Res.
Tsu-Pei Chiu, Lin Yang, Tianyin Zhou, Bradley J. Main, Stephen C. J. Parker, Sergey V. Nuzhdin, Thomas D. Tullius, Remo Rohs
2014 J jnl
NAR Breakthrough Article: TFBSshape: a motif database for DNA shape features of transcription factor binding sites.
Nucleic Acids Res.
Lin Yang, Tianyin Zhou, Iris Dror, Anthony Mathelier, Wyeth W. Wasserman, Raluca Gordân, Remo Rohs
2013 J jnl
DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale.
Nucleic Acids Res.
Tianyin Zhou, Lin Yang, Yan Lu, Iris Dror, Ana Carolina Dantas Machado, Tahereh Ghane, Rosa Di Felice, Remo Rohs
2006 J jnl
Using internal and collective variables in Monte Carlo simulations of nucleic acid structures: Chain breakage/closure algorithm and associated Jacobians.
J. Comput. Chem.
Heinz Sklenar, Daniel Wüstner, Remo Rohs