Remie Janssen

23 papers Journal 20Unranked 3
YearRankTypeTitle / Venue / Authors
2024 J jnl
A near-linear kernel for bounded-state parsimony distance.
J. Comput. Syst. Sci.
Elise Deen, Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami, Norbert Zeh
2024 J jnl
Orienting undirected phylogenetic networks.
J. Comput. Syst. Sci.
Katharina T. Huber, Leo van Iersel, Remie Janssen, Mark Jones, Vincent Moulton, Yukihiro Murakami, Charles Semple
2024 J jnl
PhyloX: A Python package for complete phylogenetic network workflows.
J. Open Source Softw.
Remie Janssen
2022 J jnl
A Near-Linear Kernel for Two-Parsimony Distance.
CoRR
Elise Deen, Leo van Iersel, Remie Janssen, Mark Jones, Yuki Murakami, Norbert Zeh
2022 J jnl
A Practical Fixed-Parameter Algorithm for Constructing Tree-Child Networks from Multiple Binary Trees.
Algorithmica
Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami, Norbert Zeh
2022 J jnl
Level-2 networks from shortest and longest distances.
Discret. Appl. Math.
Katharina T. Huber, Leo van Iersel, Remie Janssen, Mark Jones, Vincent Moulton, Yukihiro Murakami
2021 J jnl
A unifying characterization of tree-based networks and orchard networks using cherry covers.
Adv. Appl. Math.
Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami, Norbert Zeh
2021 J jnl
Comparing the topology of phylogenetic network generators.
J. Bioinform. Comput. Biol.
Remie Janssen, Pengyu Liu
2021 J jnl
Heading in the right direction? Using head moves to traverse phylogenetic network space.
J. Graph Algorithms Appl.
Remie Janssen
2021 J jnl
On cherry-picking and network containment.
Theor. Comput. Sci.
Remie Janssen, Yukihiro Murakami
2020 — conf
Combining Networks Using Cherry Picking Sequences.
AlCoB
Remie Janssen, Mark Jones, Yukihiro Murakami
2020 — conf
Linear Time Algorithm for Tree-Child Network Containment.
AlCoB
Remie Janssen, Yukihiro Murakami
2020 J jnl
Polynomial-Time Algorithms for Phylogenetic Inference Problems Involving Duplication and Reticulation.
IEEE ACM Trans. Comput. Biol. Bioinform.
Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami, Norbert Zeh
2020 J jnl
The Burning Number of Directed Graphs: Bounds and Computational Complexity.
CoRR
Remie Janssen
2019 J jnl
A Practical Fixed-Parameter Algorithm for Constructing Tree-Child Networks from Multiple Binary Trees.
CoRR
Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami, Norbert Zeh
2019 J jnl
Combining Networks using Cherry Picking Sequences.
CoRR
Remie Janssen, Mark Jones, Yukihiro Murakami
2019 J jnl
Cutting an alignment with Ockham's razor.
CoRR
Mark Jones, Philippe Gambette, Leo van Iersel, Remie Janssen, Steven Kelk, Fabio Pardi, Céline Scornavacca
2019 J jnl
Rearrangement operations on unrooted phylogenetic networks.
CoRR
Remie Janssen, Jonathan Klawitter
2019 J jnl
Rooting for phylogenetic networks.
CoRR
Katharina T. Huber, Leo van Iersel, Remie Janssen, Mark Jones, Vincent Moulton, Yukihiro Murakami, Charles Semple
2019 J jnl
Treewidth of display graphs: bounds, brambles and applications.
J. Graph Algorithms Appl.
Remie Janssen, Mark Jones, Steven Kelk, Georgios Stamoulis, Taoyang Wu
2018 — conf
Polynomial-Time Algorithms for Phylogenetic Inference Problems.
AlCoB
Leo van Iersel, Remie Janssen, Mark Jones, Yukihiro Murakami, Norbert Zeh
2018 J jnl
Treewidth of display graphs: bounds, brambles and applications.
CoRR
Remie Janssen, Mark Jones, Steven Kelk, Georgios Stamoulis, Taoyang Wu
2017 J jnl
Exploring the tiers of rooted phylogenetic network space using tail moves.
CoRR
Remie Janssen, Mark Jones, Péter L. Erdös, Leo van Iersel, Céline Scornavacca