Raunaq Malhotra

11 papers Journal 8Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
Training a Large Language Model for Medical Coding Using Privacy-Preserving Synthetic Clinical Data.
CoRR
John Cook, Michael Wyatt, Peng Wei, Iris Chin, Santosh Gupta, Van Zyl Van Vuuren, Richie Siburian, Amanda Spicer, Kristen Viviano, Alda Cami, Raunaq Malhotra, Zhewei Yao, Jeff Rasley, Gaurav Kaushik
2024 J jnl
ViPRA-Haplo: De Novo Reconstruction of Viral Populations Using Paired End Sequencing Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Weiling Li, Raunaq Malhotra, Steven H. Wu, Manjari Jha, Allen G. Rodrigo, Mary Poss, Raj Acharya
2019 J jnl
A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-K In human populations.
PLoS Comput. Biol.
Weiling Li, Lin Lin, Raunaq Malhotra, Lei Yang, Raj Acharya, Mary Poss
2019 J jnl
QuagmiR: a cloud-based application for isomiR big data analytics.
Bioinform.
Xavier Bofill-De Ros, Kevin Chen, Susanna Chen, Nikola Tesic, Dusan Randjelovic, Nikola Skundric, Svetozar Nesic, Vojislav Varjacic, Elizabeth H. Williams, Raunaq Malhotra, Minjie Jiang, Shuo Gu
2017 J jnl
A Generalized Lattice Based Probabilistic Approach for Metagenomic Clustering.
IEEE ACM Trans. Comput. Biol. Bioinform.
Manjari Jha, Raunaq Malhotra, Raj Acharya
2015 — conf
A generalized lattice model for clustering metagenomic sequences.
BCB
Manjari Mukhopadhyay, Raunaq Malhotra, Raj Acharya
2015 J jnl
Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data.
BMC Bioinform.
Yang Liu, Francesca Chiaromonte, Howard Ross, Raunaq Malhotra, Daniel Elleder, Mary Poss
2014 J jnl
Computational and Statistical Analyses of Insertional Polymorphic Endogenous Retroviruses in a Non-Model Organism.
Comput.
Le Bao, Daniel Elleder, Raunaq Malhotra, Michael Degiorgio, Theodora Maravegias, Lindsay Horvath, Laura Carrel, Colin Gillin, Tomás Hron, Helena Fábryová, David R. Hunter, Mary Poss
2013 — conf
Estimating Viral Haplotypes in a Population Using k-mer Counting.
PRIB
Raunaq Malhotra, Shruthi Prabhakara, Mary Poss, Raj Acharya
2013 J jnl
Mutant-Bin: Unsupervised Haplotype Estimation of Viral Population Diversity Without Reference Genome.
J. Comput. Biol.
Shruthi Prabhakara, Raunaq Malhotra, Raj Acharya, Mary Poss
2012 — conf
Predicting V(D)J Recombination Using Conditional Random Fields.
PRIB
Raunaq Malhotra, Shruthi Prabhakara, Raj Acharya