Raul Rodriguez-Esteban

26 papers Journal 22Unranked 3

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	TwinWeaver: An LLM-Based Foundation Model Framework for Pan-Cancer Digital Twins. CoRR Nikita Makarov, Maria Bordukova, Lena Voith von Voithenberg, Estrella Pivel-Villanueva, Sabrina Mielke, Jonathan Wickes, Hanchen Wang, Mingyu Derek Ma, Keunwoo Choi, Kyunghyun Cho, Stephen Ra, Raul Rodriguez-Esteban, Fabian Schmich, Michael P. Menden
2025	J	`jnl`	Large language models forecast patient health trajectories enabling digital twins. npj Digit. Medicine Nikita Makarov, Maria Bordukova, Papichaya Quengdaeng, Daniel Garger, Raul Rodriguez-Esteban, Fabian Schmich, Michael P. Menden
2025	J	`jnl`	PretoxTM: a text mining system for extracting treatment-related findings from preclinical toxicology reports. J. Cheminformatics Javier Corvi, Nicolás Díaz-Roussel, José M. Fernández, Francesco Ronzano, Emilio Centeno, Pablo Accuosto, Celine Ibrahim, Shoji Asakura, Frank Bringezu, Mirjam Fröhlicher, Annika Kreuchwig, Yoko Nogami, Jeong Rih, Raul Rodriguez-Esteban, Nicolas Sajot, Jörg Wichard, Heng-Yi Michael Wu, Philip Drew, Thomas Steger-Hartmann, Alfonso Valencia, Laura I. Furlong, Salvador Capella-Gutiérrez
2024	J	`jnl`	Overview of the 8th Social Media Mining for Health Applications (#SMM4H) shared tasks at the AMIA 2023 Annual Symposium. J. Am. Medical Informatics Assoc. Ari Z. Klein, Juan M. Banda, Yuting Guo, Ana Lucía Schmidt, Dongfang Xu, Ivan Flores Amaro, Raul Rodriguez-Esteban, Abeed Sarker, Graciela Gonzalez-Hernandez
2023	J	`jnl`	Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition. Database J. Biol. Databases Curation Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Melo Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez
2022	J	`jnl`	Challenges and opportunities for mining adverse drug reactions: perspectives from pharma, regulatory agencies, healthcare providers and consumers. Database J. Biol. Databases Curation Graciela Gonzalez-Hernandez, Martin Krallinger, Monica A. Muñoz, Raul Rodriguez-Esteban, Özlem Uzuner, Lynette Hirschman
2022	J	`jnl`	New reasons for biologists to write with a formal language. Database J. Biol. Databases Curation Raul Rodriguez-Esteban
2022	—	`conf`	Overview of the Seventh Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2022. SMM4H@COLING Davy Weissenbacher, Juan M. Banda, Vera Davydova, Darryl Estrada-Zavala, Luis Gascó Sánchez, Yao Ge, Yuting Guo, Ari Z. Klein, Martin Krallinger, Mathias Leddin, Arjun Magge, Raul Rodriguez-Esteban, Abeed Sarker, Ana Lucía Schmidt, Elena Tutubalina, Graciela Gonzalez-Hernandez
2022	J	`jnl`	Revisiting the decay of scientific email addresses. J. Assoc. Inf. Sci. Technol. Raul Rodriguez-Esteban, Dina Vishnyakova, Fabio Rinaldi
2021	J	`jnl`	Biomedical articles share annotations with their citation neighbors. BMC Bioinform. Raul Rodriguez-Esteban
2021	J	`jnl`	Extraction of Medication Names from Twitter Using Augmentation and an Ensemble of Language Models. CoRR Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Diego Saldana, Yi Huang, Alessandro La Torraca, Elif Ozkirimli
2020	J	`jnl`	Semantic persistence of ambiguous biomedical names in the citation network. Bioinform. Raul Rodriguez-Esteban
2019	J	`jnl`	A new approach and gold standard toward author disambiguation in MEDLINE. J. Am. Medical Informatics Assoc. Dina Vishnyakova, Raul Rodriguez-Esteban, Fabio Rinaldi
2019	—	`ch.`	Text Mining Applications. Encyclopedia of Bioinformatics and Computational Biology (3) Raul Rodriguez-Esteban
2017	—	`conf`	One model per entity: using hundreds of machine learning models to recognize and normalize biomedical names in text. BiomedicalNLP@RANLP Victor Bellon, Raul Rodriguez-Esteban
2016	J	`jnl`	A Drug-Centric View of Drug Development: How Drugs Spread from Disease to Disease. PLoS Comput. Biol. Raul Rodriguez-Esteban
2016	—	`conf`	Author Name Disambiguation in MEDLINE Based on Journal Descriptors and Semantic Types. BioTxtM@COLING 2016 Dina Vishnyakova, Raul Rodriguez-Esteban, Khan Ozol, Fabio Rinaldi
2016	J	`jnl`	Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation Qinghua Wang, Shabbir Syed-Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi
2015	J	`jnl`	Biocuration with insufficient resources and fixed timelines. Database J. Biol. Databases Curation Raul Rodriguez-Esteban
2014	J	`jnl`	OntoGene web services for biomedical text mining. BMC Bioinform. Fabio Rinaldi, Simon Clematide, Hernani Marques, Tilia Ellendorff, Martin Romacker, Raul Rodriguez-Esteban
2013	J	`jnl`	Quantifying the complexity of medical research. Bioinform. Raul Rodriguez-Esteban, William Loging
2009	J	`jnl`	Biomedical Text Mining and Its Applications. PLoS Comput. Biol. Raul Rodriguez-Esteban
2009	J	`jnl`	Figure mining for biomedical research. Bioinform. Raul Rodriguez-Esteban, Ivan Iossifov
2009	J	`jnl`	Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans. PLoS Comput. Biol. Ivan Iossifov, Raul Rodriguez-Esteban, Ilya Mayzus, Kathleen J. Millen, Andrey Rzhetsky
2008	J	`jnl`	Visualizing evolution and impact of biomedical fields. J. Biomed. Informatics Murat Cokol, Raul Rodriguez-Esteban
2006	J	`jnl`	Imitating Manual Curation of Text-Mined Facts in Biomedicine. PLoS Comput. Biol. Raul Rodriguez-Esteban, Ivan Iossifov, Andrey Rzhetsky