Raul Rabadan

24 papers A* 1Journal 17Unranked 5
YearRankTypeTitle / Venue / Authors
2024 J jnl
Disentangling Interpretable Factors with Supervised Independent Subspace Principal Component Analysis.
CoRR
Jiayu Su, David A. Knowles, Raul Rabadan
2022 J jnl
The Holdout Randomization Test for Feature Selection in Black Box Models.
J. Comput. Graph. Stat.
Wesley Tansey, Victor Veitch, Haoran Zhang, Raul Rabadan, David M. Blei
2021 J jnl
Topology identifies emerging adaptive mutations in SARS-CoV-2.
CoRR
Michael Bleher, Lukas Hahn, Juan Ángel Patino-Galindo, Mathieu Carrière, Ulrich Bauer, Raul Rabadan, Andreas Ott
2020 J jnl
A Random Matrix Theory Approach to Denoise Single-Cell Data.
Patterns
Luis C. Aparicio, Mykola Bordyuh, Andrew J. Blumberg, Raul Rabadan
2020 J jnl
MREC: a fast and versatile framework for aligning and matching point clouds with applications to single cell molecular data.
CoRR
Andrew J. Blumberg, Mathieu Carrière, Michael A. Mandell, Raul Rabadan, Soledad Villar
2020 J jnl
arcasHLA: high-resolution HLA typing from RNAseq.
Bioinform.
Rose Orenbuch, Ioan Filip, Devon Comito, Jeffrey Shaman, Itsik Pe'er, Raul Rabadan
2019 J jnl
Longitudinal molecular trajectories of diffuse glioma in adults.
Nat.
Floris P. Barthel, Kevin C. Johnson, Frederick S. Varn, Anzhela D. Moskalik, Georgette Tanner, Emre Kocakavuk, Kevin J. Anderson, Olajide Abiola, Kenneth D. Aldape, Kristin D. Alfaro, Donat Alpar, Samirkumar B. Amin, David M. Ashley, Pratiti Bandopadhayay, Jill S. Barnholtz-Sloan, Rameen Beroukhim, Christoph Bock, Priscilla K. Brastianos, Daniel J. Brat, Andrew R. Brodbelt, Alexander F. Bruns, Ketan R. Bulsara, Aruna Chakrabarty, Arnab Chakravarti, Jeffrey H. Chuang, Elizabeth B. Claus, Elizabeth J. Cochran, Jennifer Connelly, Joseph F. Costello, Gaetano Finocchiaro, Michael N. Fletcher, Pim J. French, Hui K. Gan, Mark R. Gilbert, Peter V. Gould, Matthew R. Grimmer, Antonio Iavarone, Azzam Ismail, Michael D. Jenkinson, Mustafa Khasraw, Hoon Kim, Mathilde C. M. Kouwenhoven, Peter S. LaViolette, Meihong Li, Peter Lichter, Keith L. Ligon, Allison K. Lowman, Tathiane M. Malta, Tali Mazor, Kerrie L. McDonald, Annette M. Molinaro, Do-Hyun Nam, Naema Nayyar, Ho Keung Ng, Chew Yee Ngan, Simone P. Niclou, Johanna M. Niers, Houtan Noushmehr, Javad Noorbakhsh, David Ryan Ormond, Chul-Kee Park, Laila M. Poisson, Raul Rabadan, Bernhard Radlwimmer, Ganesh Rao, Guido Reifenberger, Jason K. Sa, Michael Schuster, Brian L. Shaw, Susan C. Short, Peter A. E. Sillevis Smitt, Andrew E. Sloan, Marion Smits, Hiromichi Suzuki, Ghazaleh Tabatabai, Erwin G. Van Meir, Colin Watts, Michael Weller, Pieter Wesseling, Bart A. Westerman, Georg Widhalm, Adelheid Woehrer, W. K. Alfred Yung, Gelareh Zadeh, Jason T. Huse, John F. De Groot, Lucy F. Stead, Roel G. W. Verhaak
2018 A* conf
Black Box FDR.
ICML
Wesley Tansey, Yixin Wang, David M. Blei, Raul Rabadan
2018 J jnl
Black Box FDR.
CoRR
Wesley Tansey, Yixin Wang, David M. Blei, Raul Rabadan
2018 J jnl
Topological Data Analysis of Single-cell Hi-C Contact Maps.
CoRR
Mathieu Carrière, Raul Rabadan
2016 J jnl
A Theory of Taxonomy.
CoRR
Guido D'Amico, Raul Rabadan, Matthew Kleban
2015 — conf
Multiscale Topology of Chromatin Folding.
BICT
Kevin J. Emmett, Benjamin Schweinhart, Raul Rabadan
2015 — conf
Quantifying Reticulation in Phylogenetic Complexes Using Homology.
BICT
Kevin J. Emmett, Raul Rabadan
2014 — conf
Characterizing Scales of Genetic Recombination and Antibiotic Resistance in Pathogenic Bacteria Using Topological Data Analysis.
Brain Informatics and Health
Kevin J. Emmett, Raul Rabadan
2014 — ch.
Darwin or Lamarck? Future Challenges in Evolutionary Algorithms for Knowledge Discovery and Data Mining.
Interactive Knowledge Discovery and Data Mining in Biomedical Informatics
Katharina Holzinger, Vasile Palade, Raul Rabadan, Andreas Holzinger
2014 — conf
Darwin, Lamarck, or Baldwin: Applying Evolutionary Algorithms to Machine Learning Techniques.
WI-IAT (1)
Andreas Holzinger, David Blanchard, Marcus D. Bloice, Katharina Holzinger, Vasile Palade, Raul Rabadan
2014 J jnl
Data-driven discovery of seasonally linked diseases from an Electronic Health Records system.
BMC Bioinform.
Rachel D. Melamed, Hossein Khiabanian, Raul Rabadan
2014 — conf
Moduli Spaces of Phylogenetic Trees Describing Tumor Evolutionary Patterns.
Brain Informatics and Health
Sakellarios Zairis, Hossein Khiabanian, Andrew J. Blumberg, Raul Rabadan
2014 J jnl
Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer.
BMC Syst. Biol.
Francesco Abate, Sakellarios Zairis, Elisa Ficarra, Andrea Acquaviva, Chris H. Wiggins, Veronique Frattini, Anna Lasorella, Antonio Iavarone, Giorgio Inghirami, Raul Rabadan
2013 J jnl
MutComFocal: an integrative approach to identifying recurrent and focal genomic alterations in tumor samples.
BMC Syst. Biol.
Vladimir Trifonov, Laura Pasqualucci, Riccardo Dalla Favera, Raul Rabadan
2013 J jnl
SAVI: a statistical algorithm for variant frequency identification.
BMC Syst. Biol.
Vladimir Trifonov, Laura Pasqualucci, Enrico Tiacci, Brunangelo Falini, Raul Rabadan
2012 J jnl
Drug-drug interaction through molecular structure similarity analysis.
J. Am. Medical Informatics Assoc.
Santiago Vilar, Rave Harpaz, Eugenio Uriarte, Lourdes Santana, Raul Rabadan, Carol Friedman
2011 J jnl
Facilitating adverse drug event detection in pharmacovigilance databases using molecular structure similarity: application to rhabdomyolysis.
J. Am. Medical Informatics Assoc.
Santiago Vilar, Rave Harpaz, Herbert S. Chase, Stefano Costanzi, Raul Rabadan, Carol Friedman
2010 J jnl
Network Analysis of Global Influenza Spread.
PLoS Comput. Biol.
Joseph Chan, Antony Holmes, Raul Rabadan