Rasmus Nielsen

22 papers C 2Misc 1Journal 18Unranked 1

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	vcfgl: a flexible genotype likelihood simulator for VCF/BCF files. Bioinform. Isin Altinkaya, Rasmus Nielsen, Thorfinn Sand Korneliussen
2022	J	`jnl`	AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic trees. Bioinform. Lenore Pipes, Rasmus Nielsen
2022	J	`jnl`	SCONCE2: jointly inferring single cell copy number profiles and tumor evolutionary distances. BMC Bioinform. Sandra Hui, Rasmus Nielsen
2022	J	`jnl`	SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencing. Bioinform. Sandra Hui, Rasmus Nielsen
2020	J	`jnl`	A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data. Bioinform. José Víctor Moreno-Mayar, Thorfinn Sand Korneliussen, Jyoti Dalal, Gabriel Renaud, Anders Albrechtsen, Rasmus Nielsen, Anna-Sapfo Malaspinas
2020	J	`jnl`	Inferring the ancestry of parents and grandparents from genetic data. PLoS Comput. Biol. Jingwen Pei, Yiming Zhang, Rasmus Nielsen, Yufeng Wu
2017	J	`jnl`	Fast admixture analysis and population tree estimation for SNP and NGS data. Bioinform. Jade Yu Cheng, Thomas Mailund, Rasmus Nielsen
2016	J	`jnl`	A genomic history of Aboriginal Australia. Nat. Anna-Sapfo Malaspinas, Michael C. Westaway, Craig Muller, Vitor C. Sousa, Oscar Lao, Isabel Alves, Anders Bergström, Georgios Athanasiadis, Jade Yu Cheng, Jacob E. Crawford, Tim H. Heupink, Enrico Macholdt, Stephan Peischl, Simon Rasmussen, Stephan Schiffels, Sankar Subramanian, Joanne L. Wright, Anders Albrechtsen, Chiara Barbieri, Isabelle Dupanloup, Anders Eriksson, Ashot Margaryan, Ida Moltke, Irina Pugach, Thorfinn Sand Korneliussen, Ivan P. Levkivskyi, José Víctor Moreno-Mayar, Shengyu Ni, Fernando Racimo, Martin Sikora, Yali Xue, Farhang A. Aghakhanian, Nicolas Brucato, Søren Brunak, Paula F. Campos, Warren Clark, Sturla Ellingvåg, Gudjugudju Fourmile, Pascale Gerbault, Darren Injie, George Koki, Matthew Leavesley, Betty Logan, Aubrey Lynch, Elizabeth A. Matisoo-Smith, Peter J. McAllister, Alexander J. Mentzer, Mait Metspalu, Andrea B. Migliano, Les Murgha, Maude E. Phipps, William Pomat, Doc Reynolds, Francois-Xavier Ricaut, Peter Siba, Mark G. Thomas, Thomas Wales, Colleen Ma'run Wall, Stephen J. Oppenheimer, Chris Tyler-Smith, Richard Durbin, Joe Dortch, Andrea Manica, Mikkel H. Schierup, Robert A. Foley, Marta Mirazón Lahr, Claire Bowern, Jeffrey D. Wall, Thomas Mailund, Mark Stoneking, Rasmus Nielsen, Manjinder S. Sandhu, Laurent Excoffier, David M. Lambert, Eske Willerslev
2016	J	`jnl`	Estimating IBD tracts from low coverage NGS data. Bioinform. Filipe G. Vieira, Anders Albrechtsen, Rasmus Nielsen
2016	J	`jnl`	SweepFinder2: increased sensitivity, robustness and flexibility. Bioinform. Michael Degiorgio, Christian D. Huber, Melissa J. Hubisz, Ines Hellmann, Rasmus Nielsen
2016	C	`conf`	Workshop message: IoT-SoS 2016. WoWMoM Elias Z. Tragos, Rasmus Nielsen, Adam Kapovits, Claudio Cicconetti, Enzo Mingozzi, Jaudelice Cavalcante de Oliveira, Xiaohua Jia, Stefano Iellamo, Vangelis Angelakis
2015	C	`conf`	Association Mapping for Compound Heterozygous Traits Using Phenotypic Distance and Integer Programming. WABI Dan Gusfield, Rasmus Nielsen
2014	J	`jnl`	ANGSD: Analysis of Next Generation Sequencing Data. BMC Bioinform. Thorfinn Korneliussen, Anders Albrechtsen, Rasmus Nielsen
2013	J	`jnl`	Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data. BMC Bioinform. Thorfinn Sand Korneliussen, Ida Moltke, Anders Albrechtsen, Rasmus Nielsen
2011	J	`jnl`	Estimation of allele frequency and association mapping using next-generation sequencing data. BMC Bioinform. Su Yeon Kim, Kirk E. Lohmueller, Anders Albrechtsen, Yingrui Li, Thorfinn Korneliussen, Geng Tian, Niels Grarup, Tao Jiang, Gitte Andersen, Daniel Witte, Torben Jørgensen, Torben Hansen, Oluf Pedersen, Jun Wang, Rasmus Nielsen
2007	J	`jnl`	Dependence of paracentric inversion rate on tract length. BMC Bioinform. Thomas L. York, Richard Durrett, Rasmus Nielsen
2007	J	`jnl`	Finding Bioinform. Wendy S. W. Wong, Rasmus Nielsen
2006	J	`jnl`	Identification of physicochemical selective pressure on protein encoding nucleotide sequences. BMC Bioinform. Wendy S. W. Wong, Raazesh Sainudiin, Rasmus Nielsen
2005	—	`conf`	Detecting coevolving amino acid sites using Bayesian mutational mapping. ISMB (Supplement of Bioinformatics) Matthew W. Dimmic, Melissa J. Hubisz, Carlos D. Bustamante, Rasmus Nielsen
2002	J	`jnl`	Bayesian Estimation of the Number of Inversions in the History of Two Chromosomes. J. Comput. Biol. Thomas L. York, Richard Durrett, Rasmus Nielsen
2002	Misc	`conf`	Detecting Positively Selected Amino Acid Sites Using Posterior Predictive P-Values. Pacific Symposium on Biocomputing Rasmus Nielsen, John P. Huelsenbeck
2002	J	`jnl`	PATRI-paternity inference using genetic data. Bioinform. J. Signorovitch, Rasmus Nielsen