Rashmie Abeysinghe

31 papers C 1Misc 6Journal 14Unranked 10

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	AD-CDO: A Lightweight Ontology for Representing Eligibility Criteria in Alzheimer's Disease Clinical Trials. CoRR Zenan Sun, Rashmie Abeysinghe, Xiaojin Li, Xinyue Hu, Licong Cui, Guo-Qiang Zhang, Jiang Bian, Cui Tao
2025	Misc	`conf`	Identifying Developmental Intellectual Disability as a SUDEP Risk Marker from Epilepsy Monitoring Unit Reports Using Large Language Models. FLAIRS Ran Hu, Rashmie Abeysinghe, Gorbachev Jowah, Shiqiang Tao, Samden D. Lhatoo, Guo-Qiang Zhang, Licong Cui
2025	J	`jnl`	Leveraging pretrained language models for seizure frequency extraction from epilepsy evaluation reports. npj Digit. Medicine Rashmie Abeysinghe, Shiqiang Tao, Samden D. Lhatoo, Guoqiang Zhang, Licong Cui
2025	J	`jnl`	Quantitatively assessing the impact of the quality of SNOMED CT subtype hierarchy on cohort queries. J. Am. Medical Informatics Assoc. Xubing Hao, Xiaojin Li, Yan Huang, Jay Shi, Rashmie Abeysinghe, Cui Tao, Kirk Roberts, Guo-Qiang Zhang, Licong Cui
2025	C	`conf`	Temporal Ensemble Logic for Integrative Representation of the Entirety of Clinical Trials. TIME Xiaojin Li, Yan Huang, Rashmie Abeysinghe, Zenan Sun, Hongyu Chen, Pengze Li, Xing He, Shiqiang Tao, Cui Tao, Jiang Bian, Licong Cui, Guo-Qiang Zhang
2024	—	`conf`	Exploring Pre-trained Language Models for Vocabulary Alignment in the UMLS. AIME (1) Xubing Hao, Rashmie Abeysinghe, Jay Shi, Licong Cui
2024	J	`jnl`	Leveraging logical definitions and lexical features to detect missing IS-A relations in biomedical terminologies. J. Biomed. Semant. Rashmie Abeysinghe, Fengbo Zheng, Jay Shi, Samden D. Lhatoo, Licong Cui
2024	J	`jnl`	Mapping of Alzheimer's disease related data elements and the NIH Common Data Elements. BMC Medical Informatics Decis. Mak. Xubing Hao, Rashmie Abeysinghe, Fengbo Zheng, Paul E. Schulz, Licong Cui
2023	J	`jnl`	A deep learning approach to identify missing J. Am. Medical Informatics Assoc. Rashmie Abeysinghe, Fengbo Zheng, Elmer V. Bernstam, Jay Shi, Olivier Bodenreider, Licong Cui
2023	J	`jnl`	Logical definition-based identification of potential missing concepts in SNOMED CT. BMC Medical Informatics Decis. Mak. Xubing Hao, Rashmie Abeysinghe, Kirk Roberts, Licong Cui
2022	—	`conf`	A substring replacement approach for identifying missing IS-A relations in SNOMED CT. BIBM Xubing Hao, Rashmie Abeysinghe, Jay Shi, Licong Cui
2022	J	`jnl`	An evidence-based lexical pattern approach for quality assurance of Gene Ontology relations. Briefings Bioinform. Rashmie Abeysinghe, Yuntao Yang, Mason Bartels, W. Jim Zheng, Licong Cui
2022	Misc	`conf`	Automated Identification of Missing IS-A Relations in the Human Phenotype Ontology. AMIA Maryamsadat Mohtashamian, Ran Hu, Rashmie Abeysinghe, Xubing Hao, Hua Xu, Licong Cui
2022	—	`conf`	IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements. ICHI Shiqiang Tao, Wei-Chun Chou, Jianfu Li, Jingcheng Du, Pritham Ram, Rashmie Abeysinghe, Hua Xu, Xiaoqian Jiang, Peter W. Rose, Lucila Ohno-Machado, Guo-Qiang Zhang
2022	J	`jnl`	Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs. J. Biomed. Semant. Warren Manuel, Rashmie Abeysinghe, Yongqun He, Cui Tao, Licong Cui
2022	—	`conf`	Identifying Missing IS-A Relations in Orphanet Rare Disease Ontology. BIBM Maryamsadat Mohtashamian, Rashmie Abeysinghe, Xubing Hao, Licong Cui
2022	J	`jnl`	Towards quality improvement of vaccine concept mappings in the OMOP vocabulary with a semi-automated method. J. Biomed. Informatics Rashmie Abeysinghe, Adam Black, Denys Kaduk, Yupeng Li, Christian Reich, Alexander Davydov, Lixia Yao, Licong Cui
2021	Misc	`conf`	A Comparison of Exhaustive and Non-lattice-based Methods for Auditing Hierarchical Relations in Gene Ontology. AMIA Rashmie Abeysinghe, Fengbo Zheng, Licong Cui
2021	J	`jnl`	Identification of missing concepts in biomedical terminologies using sequence-based formal concept analysis. BMC Medical Informatics Decis. Mak. Fengbo Zheng, Rashmie Abeysinghe, Licong Cui
2021	—	`conf`	Leveraging non-lattice subgraphs for suggestion of new concepts for SNOMED CT. BIBM Xubing Hao, Rashmie Abeysinghe, Fengbo Zheng, Licong Cui
2020	J	`jnl`	Detecting missing IS-A relations in the NCI Thesaurus using an enhanced hybrid approach. BMC Medical Informatics Decis. Mak. Fengbo Zheng, Rashmie Abeysinghe, Nicholas Sioutos, Lori Whiteman, Lyubov Remennik, Licong Cui
2020	J	`jnl`	SSIF: Subsumption-based Sub-term Inference Framework to audit Gene Ontology. Bioinform. Rashmie Abeysinghe, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui
2019	—	`conf`	A Hybrid Method to Detect Missing Hierarchical Relations in NCI Thesaurus. BIBM Fengbo Zheng, Rashmie Abeysinghe, Licong Cui
2019	Misc	`conf`	Leveraging Non-lattice Subgraphs to Audit Hierarchical Relations in NCI Thesaurus. AMIA Rashmie Abeysinghe, Michael A. Brooks, Licong Cui
2019	—	`conf`	Pattern-based Extraction of Disease Drug Combination Knowledge from Biomedical Literature. ICHI Jing Liu, Rashmie Abeysinghe, Fengbo Zheng, Licong Cui
2018	—	`conf`	A Lexical Approach to Identifying Subtype Inconsistencies in Biomedical Terminologies. BIBM Rashmie Abeysinghe, Fengbo Zheng, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui
2018	Misc	`conf`	Identifying Similar Non-Lattice Subgraphs in Gene Ontology based on Structural Isomorphism and Semantic Similarity of Concept Labels. AMIA Rashmie Abeysinghe, Xufeng Qu, Licong Cui
2018	J	`jnl`	Query-constraint-based mining of association rules for exploratory analysis of clinical datasets in the National Sleep Research Resource. BMC Medical Informatics Decis. Mak. Rashmie Abeysinghe, Licong Cui
2017	—	`conf`	Auditing subtype inconsistencies among gene ontology concepts. BIBM Rashmie Abeysinghe, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui
2017	Misc	`conf`	Quality Assurance of NCI Thesaurus by Mining Structural-Lexical Patterns. AMIA Rashmie Abeysinghe, Michael A. Brooks, Jeffery C. Talbert, Licong Cui
2017	—	`conf`	Query-constraint-based association rule mining from diverse clinical datasets in the national sleep research resource. BIBM Rashmie Abeysinghe, Licong Cui