Randall C. Wetzel

25 papers A* 2B 1Misc 4Journal 15Unranked 3
YearRankTypeTitle / Venue / Authors
2023 J jnl
Biomed. Signal Process. Control.
Ishmael Obeso, Benjamin Yoon, David R. Ledbetter, Melissa Aczon, Eugene Laksana, Alice X. Zhou, R. Andrew Eckberg, Keith Mertan, Robinder G. Khemani, Randall C. Wetzel
2023 J jnl
J. Am. Medical Informatics Assoc.
Alice X. Zhou, Melissa D. Aczon, Eugene Laksana, David R. Ledbetter, Randall C. Wetzel
2021 J jnl
IEEE Access
David R. Ledbetter, Eugene Laksana, Melissa Aczon, Randall C. Wetzel
2021 J jnl
J. Biomed. Informatics
Long Van Ho, Melissa Aczon, David R. Ledbetter, Randall C. Wetzel
2021 J jnl
CoRR
George A. Pappy, Melissa D. Aczon, Randall C. Wetzel, David R. Ledbetter
2020 J jnl
CoRR
David R. Ledbetter, Eugene Laksana, Melissa Aczon, Randall C. Wetzel
2020 J jnl
J. Biomed. Informatics
Eugene Laksana, Melissa Aczon, Long Van Ho, Cameron Carlin, David R. Ledbetter, Randall C. Wetzel
2019 J jnl
CoRR
Long Van Ho, Melissa D. Aczon, David R. Ledbetter, Randall C. Wetzel
2019 J jnl
CoRR
Nicole Fronda, Jessica Asencio, Cameron Carlin, David R. Ledbetter, Melissa Aczon, Randall C. Wetzel, Barry Markovitz
2019 J jnl
CoRR
Eugene Laksana, Melissa Aczon, Long Van Ho, Cameron Carlin, David R. Ledbetter, Randall C. Wetzel
2018 Misc conf
AMIA
Jamie C. Palumbo, Randall C. Wetzel, Gerardo Soto-Campos
2018 J jnl
J. Am. Medical Informatics Assoc.
Cameron Carlin, Long Van Ho, David R. Ledbetter, Melissa D. Aczon, Randall C. Wetzel
2017 J jnl
CoRR
Melissa Aczon, David R. Ledbetter, Long Van Ho, Alec M. Gunny, Alysia Flynn, Jon Williams, Randall C. Wetzel
2017 conf
MLHC
Kazi T. Islam, Christian R. Shelton, Juan I. Casse, Randall C. Wetzel
2017 J jnl
CoRR
Cameron Carlin, Long Van Ho, David R. Ledbetter, Melissa Aczon, Randall C. Wetzel
2017 Misc conf
AMIA
Long Van Ho, David R. Ledbetter, Melissa D. Aczon, Randall C. Wetzel
2016 Misc conf
AMIA
Melissa Aczon, David R. Ledbetter, Long Van Ho, Alec M. Gunny, Randall C. Wetzel
2016 conf
MLHC
Zachary C. Lipton, David C. Kale, Randall C. Wetzel
2016 J jnl
CoRR
Zachary Chase Lipton, David C. Kale, Randall C. Wetzel
2016 A* conf
ICLR (Poster)
Zachary Chase Lipton, David C. Kale, Charles Elkan, Randall C. Wetzel
2015 Misc conf
AMIA
David C. Kale, Zhengping Che, Mohammad Taha Bahadori, Wenzhe Li, Yan Liu, Randall C. Wetzel
2015 J jnl
CoRR
Zachary Chase Lipton, David C. Kale, Randall C. Wetzel
2014 A* conf
ICDM
David C. Kale, Dian Gong, Zhengping Che, Yan Liu, Gérard G. Medioni, Randall C. Wetzel, Patrick Ross
2012 conf
IHI
Benjamin M. Marlin, David C. Kale, Robinder G. Khemani, Randall C. Wetzel
2011 B conf
CBMS
Daniel J. Crichton, Chris A. Mattmann, Andrew F. Hart, David C. Kale, Robinder G. Khemani, Patrick Ross, Sarah Rubin, Paul Veeravatanayothin, Amy Braverman, Cameron Goodale, Randall C. Wetzel
s3-storage/s3_test.py
← Index s3-storage/s3_test.py python
#!/usr/bin/env python3
"""
Simple script to test S3 connectivity and download.
Usage: python s3_test.py
"""

import os
import time
import tempfile
from minio import Minio
from minio.error import S3Error
from dotenv import load_dotenv

# Load environment variables
load_dotenv()

def get_minio_client():
    """Create and return a Minio client using credentials from .env file"""
    endpoint = os.getenv("S3_ENDPOINT")
    access_key = os.getenv("S3_ACCESS_KEY")
    secret_key = os.getenv("S3_SECRET_KEY")
    secure = True 
    
    print(f"Connecting to S3 endpoint: {endpoint} (secure={secure})")
    
    return Minio(
        endpoint=endpoint,
        access_key=access_key,
        secret_key=secret_key,
        secure=secure
    )

def test_connection():
    """Test basic connectivity to S3"""
    try:
        client = get_minio_client()
        
        # Try to list buckets as a basic connectivity test
        buckets = client.list_buckets()
        print(f"Successfully connected to S3. Found {len(buckets)} buckets:")
        for bucket in buckets:
            print(f"  - {bucket.name}")
        
        return client
    except Exception as e:
        print(f"Failed to connect to S3: {e}")
        return None

def test_bucket_access(client, bucket_name):
    """Test access to a specific bucket"""
    try:
        exists = client.bucket_exists(bucket_name)
        if exists:
            print(f"Bucket '{bucket_name}' exists and is accessible")
            
            # List a few objects to verify access
            count = 0
            objects = []
            for obj in client.list_objects(bucket_name, recursive=True):
                print(f"  - {obj.object_name} ({obj.size} bytes)")
                objects.append(obj)
                count += 1
                if count >= 5:
                    break
            
            print(f"Found at least {len(objects)} objects in bucket")
            return objects
        else:
            print(f"Bucket '{bucket_name}' does not exist or is not accessible")
            return []
    except Exception as e:
        print(f"Error accessing bucket '{bucket_name}': {e}")
        return []

def test_download(client, bucket_name, object_name):
    """Test downloading a specific object"""
    try:
        print(f"Attempting to download: {object_name}")
        start_time = time.time()
        
        # Create a temporary file to store the downloaded object
        with tempfile.NamedTemporaryFile(delete=False) as temp_file:
            temp_path = temp_file.name
        
        # Download the object
        client.fget_object(bucket_name, object_name, temp_path)
        
        # Check if the file was downloaded successfully
        file_size = os.path.getsize(temp_path)
        elapsed_time = time.time() - start_time
        
        print(f"Download successful: {file_size} bytes in {elapsed_time:.2f} seconds")
        print(f"Average download speed: {file_size/elapsed_time/1024:.2f} KB/s")
        
        # Clean up
        os.unlink(temp_path)
        return True
    except S3Error as e:
        print(f"S3 Error during download: {e}")
        return False
    except Exception as e:
        print(f"Error downloading object: {e}")
        return False

def main():
    """Main function to run all tests"""
    print("=== S3 Connectivity Test ===")
    
    # Test basic connectivity
    client = test_connection()
    if not client:
        return
    
    # Get bucket name from environment variable
    bucket_name = "redb"
    print(f"\n=== Testing Access to Bucket: {bucket_name} ===")
    objects = test_bucket_access(client, bucket_name)
    
    if objects:
        # Test downloading the first object
        first_object = objects[0].object_name
        print(f"\n=== Testing Download of Object: {first_object} ===")
        test_download(client, bucket_name, first_object)
        
        # If the first one worked, let's try a specific file from the error log
        print(f"\n=== Testing Download of Specific Object ===")
        specific_object = "00/06/00062073114defac39cb7ab9cb99a0b77c535a09a241c60d47ddd0b6431629f1.zip"
        test_download(client, bucket_name, specific_object)

if __name__ == "__main__":
    main()