Ralf Hofestädt

109 papers A 1B 2C 2Misc 1Journal 62Unranked 32

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Editorial - 20 years Journal of Integrative Bioinformatics. J. Integr. Bioinform. Ralf Hofestädt
2025	J	`jnl`	STCDB4ND: a signal transduction classification database for neurological diseases. Database J. Biol. Databases Curation Boyan Gong, Sida Li, Yifan Chen, Liya Liu, Ralf Hofestädt, Ming Chen
2024	J	`jnl`	BGRS: bioinformatics of genome regulation and data integration. J. Integr. Bioinform. Yuriy L. Orlov, Ming Chen, Nikolay A. Kolchanov, Ralf Hofestädt
2024	J	`jnl`	International symposium on integrative bioinformatics 2024 - editorial. J. Integr. Bioinform. Can Türker, Christian Panse, Björn Sommer, Marcel Friedrichs, Ralf Hofestädt
2021	J	`jnl`	OverCOVID: an integrative web portal for SARS-CoV-2 bioinformatics resources. J. Integr. Bioinform. Md. Asif Ahsan, Yongjing Liu, Cong Feng, Ralf Hofestädt, Ming Chen
2021	J	`jnl`	Special Issue of the 1st International Applied Bioinformatics Conference (iABC'21). J. Integr. Bioinform. Jens Allmer, Mourad Elloumi, Matteo Comin, Ralf Hofestädt
2021	J	`jnl`	VANESA: An open-source hybrid functional Petri net modeling and simulation environment in systems biology. Biosyst. Christoph Brinkrolf, Lennart Ochel, Ralf Hofestädt
2020	J	`jnl`	Bioinformatics of genome regulation and structure - 2020 papers collection. J. Integr. Bioinform. Yuriy L. Orlov, Oxana B. Dobrovolskaya, Ming Chen, Ralf Hofestädt
2019	J	`jnl`	Bioinformatics research at BGRS\SB-2018. J. Bioinform. Comput. Biol. Yuriy L. Orlov, Ralf Hofestädt, Tatiana V. Tatarinova
2019	J	`jnl`	Integrative Bioinformatics: History and Future. J. Integr. Bioinform. Ming Chen, Ralf Hofestädt, Jan Taubert
2019	J	`jnl`	JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools. J. Integr. Bioinform. Marcel Friedrichs, Alban Shoshi, Piotr Chmura, Jon C. Ison, Veit Schwämmle, Falk Schreiber, Ralf Hofestädt, Björn Sommer
2019	J	`jnl`	Systems biology research at BGRS-2018. BMC Syst. Biol. Yuriy L. Orlov, Ralf Hofestädt, Ancha V. Baranova
2019	J	`jnl`	Tissue-Specific Subcellular Localization Prediction Using Multi-Label Markov Random Fields. IEEE ACM Trans. Comput. Biol. Bioinform. Lu Zhu, Ralf Hofestädt, Martin Ester
2018	J	`jnl`	GenCoNet - A Graph Database for the Analysis of Comorbidities by Gene Networks. J. Integr. Bioinform. Alban Shoshi, Ralf Hofestädt, Olga I. Zolotareva, Marcel Friedrichs, Alex Maier, Vladimir A. Ivanisenko, Victor E. Dosenko, Elena Yu. Bragina
2018	J	`jnl`	Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell. J. Integr. Bioinform. Niklas Biere, Mehmood Ghaffar, Anja Doebbe, Daniel Jäger, Nils Rothe, Benjamin M. Friedrich, Ralf Hofestädt, Falk Schreiber, Olaf Kruse, Björn Sommer
2018	J	`jnl`	Integrative Analysis of Co-Morbid Multifactorial Diseases. J. Integr. Bioinform. Ralf Hofestädt, Vladimir A. Ivanisenko
2018	J	`jnl`	Molecular Relationships between Bronchial Asthma and Hypertension as Comorbid Diseases. J. Integr. Bioinform. Elena Yu. Bragina, Irina A. Goncharova, Anna F. Garaeva, Evgeniy V. Nemerov, Anastasija A. Babovskaya, Andrey B. Karpov, Yulia V. Semenova, Irina Z. Zhalsanova, Densema E. Gomboeva, Olga V. Saik, Olga I. Zolotareva, Vladimir A. Ivanisenko, Victor E. Dosenko, Ralf Hofestädt, Maxim B. Freidin
2018	—	`conf`	OMPetri: A New Petri Net Simulation Environment Based on OpenModelica. ICBBT Ralf Hofestädt, Christoph Brinkrolf, Philo Reipke
2018	J	`jnl`	Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature. J. Integr. Bioinform. Olga V. Saik, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena Yu. Bragina, Maxim B. Freidin, Victor E. Dosenko, Olga I. Zolotareva, Evgeniy L. Choynzonov, Ralf Hofestädt, Vladimir A. Ivanisenko
2018	—	`conf`	Visualization and Analysis of miRNAs Implicated in Amyotrophic Lateral Sclerosis Within Gene Regulatory Pathways. GMDS Hamid Hamzeiy, Rabia Suluyayla, Christoph Brinkrolf, Sebastian Jan Janowski, Ralf Hofestädt, Jens Allmer
2018	J	`jnl`	shRNA-Induced Knockdown of a Bioinformatically Predicted Target IL10 Influences Functional Parameters in Spontaneously Hypertensive Rats with Asthma. J. Integr. Bioinform. Tatiana Drevytska, Roman Morhachov, Lesya Tumanovska, Georgiy Portnichenko, Vasyl Nagibin, Oleksiy Boldyriev, Tatiana Lapikova-Bryhinska, Veronika Gurianova, Borys Dons'koi, Maxim B. Freidin, Vladimir A. Ivanisenko, Elena Yu. Bragina, Ralf Hofestädt, Victor E. Dosenko
2017	J	`jnl`	Computational miRNomics - Integrative Approaches. J. Integr. Bioinform. Ralf Hofestädt, Falk Schreiber, Björn Sommer, Jens Allmer
2017	J	`jnl`	Editorial - Bioinformatics development at the BGRS\SB conference series: 10th anniversary. J. Bioinform. Comput. Biol. Yuriy L. Orlov, Nikolay A. Kolchanov, Ralf Hofestädt, Limsoon Wong
2017	—	`conf`	KALIS - An eHealth System for Biomedical Risk Analysis of Drugs. eHealth Alban Shoshi, Ulrich Müller, Arben Shoshi, Venus Ogultarhan, Ralf Hofestädt
2017	J	`jnl`	The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics and outcomes. BMC Bioinform. Paolo Romano, Ralf Hofestädt, Matthias Lange, Domenica D'Elia
2017	J	`jnl`	Visualization and Analysis of MicroRNAs within KEGG Pathways using VANESA. J. Integr. Bioinform. Hamid Hamzeiy, Rabia Suluyayla, Christoph Brinkrolf, Sebastian Jan Janowski, Ralf Hofestädt, Jens Allmer
2016	J	`jnl`	DaTo: an atlas of biological databases and tools. J. Integr. Bioinform. Qilin Li, Yincong Zhou, Yingmin Jiao, Zhao Zhang, Lin Bai, Li Tong, Xiong Yang, Björn Sommer, Ralf Hofestädt, Ming Chen
2016	—	`conf`	KATIS: An eHealth System for Complementary Medicine. eHealth Venus Ogultarhan, Alban Shoshi, Rico Magnucki, Benjamin Kormeier, Ralf Hofestädt
2015	J	`jnl`	GraphSAW: A web-based system for graphical analysis of drug interactions and side effects using pharmaceutical and molecular data. BMC Medical Informatics Decis. Mak. Alban Shoshi, Tobias Hoppe, Benjamin Kormeier, Venus Ogultarhan, Ralf Hofestädt
2015	J	`jnl`	Identifying adverse drug reactions and drug-induced diseases using network-based drug mapping. J. Bioinform. Comput. Biol. Alban Shoshi, Venus Ogultarhan, Tobias Hoppe, Benjamin Kormeier, Ulrich Müller, Ralf Hofestädt
2015	J	`jnl`	Introductory note for BGRS\SB-2014 special issue. J. Bioinform. Comput. Biol. Yuriy L. Orlov, Ralf Hofestädt, Nikolay A. Kolchanov
2014	—	`book`	Approaches in Integrative Bioinformatics - Towards the Virtual Cell Ming Chen, Ralf Hofestädt
2014	—	`ed.`	German conference on bioinformatics 2014, September 28 - October 1, 2014, Bielefeld, Germany GCB Robert Giegerich, Ralf Hofestädt, Tim W. Nattkemper
2014	—	`ch.`	Integrative Bioinformatics. Approaches in Integrative Bioinformatics Ming Chen, Ralf Hofestädt
2014	J	`jnl`	Open problems in Petri net modeling and simulation of biological systems. it Inf. Technol. Ming Chen, Ralf Hofestädt
2014	J	`jnl`	VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications. J. Integr. Bioinform. Christoph Brinkrolf, Sebastian Janowski, Benjamin Kormeier, Martin Lewinski, Klaus Hippe, Daniela Borck, Ralf Hofestädt
2013	J	`jnl`	Computational Construction of Specialized Biological Networks. J. Bioinform. Comput. Biol. Hang-mao Lee, Karl J. Dietz, Ralf Hofestädt
2013	J	`jnl`	Editorial. J. Integr. Bioinform. Ralf Hofestädt, Benjamin Kormeier, Matthias Lange, Falk Schreiber, Björn Sommer, Stephan Weise
2013	J	`jnl`	Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. J. Bioinform. Comput. Biol. Björn Sommer, Benjamin Kormeier, Pavel Demenkov, Patrizio Arrigo, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
2012	Misc	`conf`	A new object-oriented Petri net simulation environment based on modelica. WSC Sabrina Proß, Bernhard Bachmann, Sebastian Janowski, Ralf Hofestädt
2012	—	`conf`	KAIS: Ein webbasiertes System zur patientenindividuellen Arzneimittel-Interaktionsprüfung. GI-Jahrestagung Alban Shoshi, Arben Shoshi, Ralf Hofestädt
2011	J	`jnl`	Data Warehouses in Bioinformatics: Integration of Molecular Biological Data. it Inf. Technol. Benjamin Kormeier, Klaus Hippe, Ralf Hofestädt
2011	—	`conf`	Daten in den Lebenswissenschaften: Datenbanken als Kommunikationszentrum. GI-Jahrestagung Wolfgang Müller, Ralf Hofestädt, Klaus A. Kuhn, Can Türker
2011	—	`conf`	Fundamental Features of Metabolic Computing. MICAI (2) Ralf Hofestädt
2011	J	`jnl`	MyBioNet: interactively visualize, edit and merge biological networks on the Web. Bioinform. Donglin Huang, Yiling Huang, Youhuang Bai, Dijun Chen, Ralf Hofestädt, Christian Klukas, Ming Chen
2011	J	`jnl`	Petri net models for the semi-automatic construction of large scale biological networks. Nat. Comput. Ming Chen, Sridhar Hariharaputran, Ralf Hofestädt, Benjamin Kormeier, Sarah Spangardt
2010	J	`jnl`	CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases. J. Integr. Bioinform. Benjamin Kormeier, Klaus Hippe, Thoralf Töpel, Ralf Hofestädt
2010	—	`conf`	DAWIS-M.D. - A Data Warehouse System for Metabolic Data. GI Jahrestagung (2) Klaus Hippe, Benjamin Kormeier, Thoralf Töpel, Sebastian Janowski, Ralf Hofestädt
2010	—	`conf`	Daten in den Lebenswissenschaften. Vom Papier über Datenbanken zur integrierten Informationsquelle (Vorwort). GI Jahrestagung (2) Wolfgang Müller, Ralf Hofestädt, Klaus A. Kuhn, Can Türker
2010	—	`conf`	Informationssysteme für die translationale Gesundheitsforschung (Vorwort). GI Jahrestagung (1) Alfred Winter, Ralf Hofestädt, Klaus A. Kuhn
2010	J	`jnl`	Modeling of Cell-to-Cell Communication Processes with Petri Nets Using the Example of Quorum Sensing. Silico Biol. Sebastian Janowski, Benjamin Kormeier, Thoralf Töpel, Klaus Hippe, Ralf Hofestädt, Nils Willassen, Rafael Friesen, Sebastian Rubert, Daniela Borck, Peik Haugen, Ming Chen
2010	—	`conf`	PBSK browser: Navigate biological pathways of PSI-MI, BioPAX, SBML and KGML formats. BIBM Workshops Donglin Huang, Yiling Huang, Christian Klukas, Ralf Hofestädt, Ming Chen
2010	J	`jnl`	Prediction of thioredoxin and glutaredoxin target proteins by identifying reversibly oxidized cysteinyl residues. J. Integr. Bioinform. Hang-mao Lee, Karl J. Dietz, Ralf Hofestädt
2010	J	`jnl`	Reconstruction of biological networks based on life science data integration. J. Integr. Bioinform. Benjamin Kormeier, Klaus Hippe, Patrizio Arrigo, Thoralf Töpel, Sebastian Janowski, Ralf Hofestädt
2010	J	`jnl`	Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. J. Integr. Bioinform. Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
2009	J	`jnl`	Bioinformatik. Inform. Spektrum Ralf Hofestädt, Ernst W. Mayr
2009	—	`conf`	CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases. GI Jahrestagung Benjamin Kormeier, Klaus Hippe, Thoralf Töpel, Ralf Hofestädt
2009	—	`conf`	Daten in den Lebenswissenschaften - Vom Paper über Datenbanken zur integrierten Informationsquelle. GI Jahrestagung Ralf Hofestädt, Klaus Kuhn, Wolfgang Müller, Can Türker
2008	J	`jnl`	BioDWH: A Data Warehouse Kit for Life Science Data Integration. J. Integr. Bioinform. Thoralf Töpel, Benjamin Kormeier, Andreas Klassen, Ralf Hofestädt
2007	B	`conf`	A Medical Case-Based Reasoning Component for the Rare Metabolic Diseases Database Ramedis. CBMS Thoralf Töpel, Jens Neumann, Ralf Hofestädt
2007	J	`jnl`	Extended Backus-Systems for the Representation and Specification of the genome. J. Bioinform. Comput. Biol. Ralf Hofestädt
2007	J	`jnl`	VINEdb: a data warehouse for integration and interactive exploration of life science data. J. Integr. Bioinform. Sridhar Hariharaputran, Thoralf Töpel, Björn Brockschmidt, Ralf Hofestädt
2006	J	`jnl`	A medical bioinformatics approach for metabolic disorders: Biomedical data prediction, modeling, and systematic analysis. J. Biomed. Informatics Ming Chen, Ralf Hofestädt
2006	J	`jnl`	MILAN - A medical information-system linking agents to metabolic networks. J. Integr. Bioinform. B. Prins, Ralf Hofestädt
2004	—	`conf`	04281 Abstracts Collection - Integrative Bioinformatics - Aspects of the Virtual Cell. Integrative Bioinformatics - Aspects of the Virtual Cell Julio Collado-Vides, Ralf Hofestädt, Christoph W. Sensen
2004	J	`jnl`	An algorithm for linear metabolic pathway alignment. Silico Biol. Ming Chen, Ralf Hofestädt
2004	—	`ed.`	Integrative Bioinformatics - Aspects of the Virtual Cell, 04.07. - 09.07.2004 Integrative Bioinformatics - Aspects of the Virtual Cell Julio Collado-Vides, Ralf Hofestädt, Christoph W. Sensen
2004	J	`jnl`	Molekulare Bioinformatik. it Inf. Technol. Ralf Hofestädt, Hans-Peter Lenhof
2004	J	`jnl`	Preface - Dagstuhl Seminar on Integrative Bioinformatics. Silico Biol. Ralf Hofestädt
2004	J	`jnl`	STCDB: Signal Transduction Classification Database. Nucleic Acids Res. Ming Chen, Susana Lin, Ralf Hofestädt
2003	J	`jnl`	IIUDB: An object-oriented system for modelling, integration and analysis of gene controlled metabolic networks. Silico Biol. Andreas Freier, Ralf Hofestädt, Matthias Lange
2003	J	`jnl`	Quantitative Petri net model of gene regulated metabolic networks in the cell. Silico Biol. Ming Chen, Ralf Hofestädt
2003	J	`jnl`	The 3rd International Conference on Bioinformatics of Genome Regulation and Structure (BGRS 2002) - Preface. Silico Biol. Nikolay A. Kolchanov, Ralf Hofestädt
2002	J	`jnl`	BioDataServer: A SQL-based service for the online integration of life science data. Silico Biol. Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz, Andreas Stephanik
2002	B	`conf`	Case-based Support of Information Retrieval and Analysis of Molecular Data. CBMS Ralf Hofestädt, Thoralf Töpel
2002	—	`ed.`	Gene Regulations and Metabolism - Postgenomic Computational Approaches Gene Regulations and Metabolism Julio Collado-Vides, Ralf Hofestädt
2002	—	`conf`	Information Fusion and Metabolic Network Control. Gene Regulations and Metabolism Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz
2002	J	`jnl`	Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface). Silico Biol. Ralf Hofestädt, Nikolay A. Kolchanov, John Reinitz
2002	—	`book`	Studien- und Forschungsführer Bioinformatik. Ralf Hofestädt, Roland Schnee
2002	J	`jnl`	Supporting genotype-phenotype correlation with the rare metabolic diseases database Ramedis. Silico Biol. Thoralf Töpel, Uwe Scholz, Ulrike Mischke, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz
2001	—	`conf`	Information System for the Support of Research, Diagnosis and Therapy of Inborn Metabolic Diseases. MedInfo Ralf Kauert, Thoralf Töpel, Uwe Scholz, Ralf Hofestädt
2001	—	`conf`	RAMEDIS - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype Correlation. German Conference on Bioinformatics Thoralf Töpel, Uwe Scholz, Ulrike Mischke, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz
2001	—	`conf`	RAMEDIS - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype Correlation. MedInfo Ulrike Mischke, Uwe Scholz, Thoralf Töpel, Dagmar Scheible, Ralf Hofestädt, Friedrich Trefz
2000	C	`conf`	Logical and Semantic Database Integration. BIBE Jacob Köhler, Matthias Lange, Ralf Hofestädt, Steffen Schulze-Kremer
2000	—	`conf`	Workshop "Molekulare Bioinformatik". GI Jahrestagung Ralf Hofestädt, Hans-Peter Lenhof
1999	—	`conf`	MARGBench - An Approach for Integration, Modeling and Animation of Metabolic Networks. German Conference on Bioinformatics Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz
1999	—	`conf`	Metabolic Drug Pointing and Information Processing. MIE Ralf Hofestädt, Ulrike Mischke, Manuela Prüß, Uwe Scholz
1999	—	`conf`	Predicting transcription factor binding sites by constructing context specific matrices. German Conference on Bioinformatics Niels Grabe, Ralf Hofestädt
1998	—	`conf`	A Integrative Molecular Information System. MedInfo Ralf Hofestädt
1998	—	`conf`	A promoter model based on different combinations of binding sites. German Conference on Bioinformatics Niels Grabe, Ralf Hofestädt
1998	J	`jnl`	Quantitative modeling of biochemical networks. Silico Biol. Ralf Hofestädt, S. Thelen
1998	C	`conf`	Schema Derivation for WWW Information Sources and Their Integration with Databases in Bioinformatics. ADBIS Michael Höding, Ralf Hofestädt, Gunter Saake, Uwe Scholz
1998	—	`conf`	The Metabolic Diseases DataBase (MDDB) - A Molecular Database Toolkit for the Detection of Inborne Errors. German Conference on Bioinformatics Ralf Hofestädt, Manuela Prüß, Uwe Scholz, Holger Urban
1998	—	`conf`	Workshop: Molekulare Bioinformatik. GI Jahrestagung Ralf Hofestädt
1997	—	`ed.`	Bioinformatics, German Conference on Bioinformatics, Leipzig, Germany, September 30 - October 2, 1996, Selected Papers German Conference on Bioinformatics - Selected Papers Ralf Hofestädt, Thomas Lengauer, Markus Löffler, Dietmar Schomburg
1996	J	`jnl`	Editorial: Informatik in den Biowissenschaften. Informationstechnik Tech. Inform. Ralf Hofestädt, Markus Löffler, Thomas Lengauer
1996	—	`conf`	Metabolic Pathways and the Detection of Inborn Errors. German Conference on Bioinformatics B. Gandomi, Ralf Hofestädt, Thomas Pfisterer
1996	J	`jnl`	Simulation of load balancing with cellular automata. Simul. Pract. Theory Ralf Hofestädt, X. Huang, D. Beerbohm
1994	—	`conf`	Dynamic Load Balancing Based on the Theory of Cellular Automata. EUROSIM D. Beerbohm, S. Bresgen, Ralf Hofestädt, X. Huang
1994	—	`conf`	Ein wissensbasierter Ansatz zur Diagnose genetischer Krankheiten. GMDS U. Ashauer, Ralf Hofestädt
1994	J	`jnl`	Workshop Modellierung der Zelldifferenzierung. Künstliche Intell. Ralf Hofestädt, Kurt Lautenbach, Markus Löffler
1993	J	`jnl`	1. Fachtagung "Informatik in den Biowissenschaften". Künstliche Intell. Ralf Hofestädt, Fritz Krückeberg, Thomas Lengauer
1993	A	`conf`	Grammatical Formalization of Metabolic Processes. ISMB Ralf Hofestädt
1993	—	`ed.`	Informatik in den Biowissenschaften, 1. Fachtagung der GI-FG 4.0.3 "Informatik in den Biowissenschaften", Bonn, 15./16. Februar 1993, Proceedings Informatik in den Biowissenschaften Ralf Hofestädt, Fritz Krückeberg, Thomas Lengauer
1992	J	`jnl`	Bioinformatik und Umweltinformatik - neue Aspekte und Aufgaben der Informatik. Inform. Forsch. Entwickl. Dieter Schütt, Ralf Hofestädt
1991	—	`conf`	A Cellular Grammar to Model Metabolic Processes. MIE Ralf Hofestädt
1991	—	`conf`	Simulation metabolischer Prozesse auf der Basis einer grammatikalischen Formalisierung. ASIM Ralf Hofestädt
1991	—	`conf`	VARY - The First Expert System for Analysis of Genome Variability. MIE Ch. Wojahn, Ralf Hofestädt, H.-P. Müller
1990	—	`—`	Vom Metabolismus zur genetischen Sprache. Ralf Hofestädt