Ralf Herwig

26 papers B 1C 1Journal 23Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Briefings Bioinform.
Pedro Alonso Campana, Paul Prasse, Ralf Herwig, Tobias Scheffer
2025 J jnl
Frontiers Artif. Intell.
Chris Bauer, Long Tran Duc Dang, Twan van den Beucken, Johannes Schuchhardt, Ralf Herwig
2023 J jnl
Bioinform.
Matthias Lienhard, Twan van den Beucken, Bernd Timmermann, Myriam Hochradel, Stefan Börno, Florian Caiment, Martin Vingron, Ralf Herwig
2022 conf
ICBBB
Nhan Nguyen, Matthias Lienhard, Ralf Herwig, Jos Kleinjans, Danyel Jennen
2022 J jnl
Nucleic Acids Res.
Atanas Kamburov, Ralf Herwig
2016 J jnl
Database J. Biol. Databases Curation
Christopher Hardt, Moritz Emanuel Beber, Axel Rasche, Atanas Kamburov, Dennie G. A. J. Hebels, Jos C. S. Kleinjans, Ralf Herwig
2015 J jnl
Bioinform.
Diana M. Hendrickx, Hugo J. W. L. Aerts, Florian Caiment, Dominic Clark, Timothy M. D. Ebbels, Chris T. A. Evelo, Hans Gmuender, Dennie G. A. J. Hebels, Ralf Herwig, Jürgen Hescheler, Danyel G. J. Jennen, Marlon J. A. Jetten, Stathis Kanterakis, Hector C. Keun, Vera Matser, John P. Overington, Ekaterina Pilicheva, Ugis Sarkans, Marcelo P. Segura-Lepe, Isaia Sotiriadou, Timo Wittenberger, Clemens Wittwehr, Antonella Zanzi, Jos C. S. Kleinjans
2014 J jnl
Bioinform.
Matthias Lienhard, Christina Grimm, Markus Morkel, Ralf Herwig, Lukas Chavez
2013 J jnl
Nucleic Acids Res.
Atanas Kamburov, Ulrich Stelzl, Hans Lehrach, Ralf Herwig
2012 J jnl
BMC Bioinform.
Atanas Kamburov, Arndt Grossmann, Ralf Herwig, Ulrich Stelzl
2012 J jnl
BMC Bioinform.
Felix Dreher, Thomas Kreitler, Christopher Hardt, Atanas Kamburov, Reha Yildirimman, Karl Schellander, Hans Lehrach, Bodo M. H. Lange, Ralf Herwig
2012 J jnl
Nucleic Acids Res.
Atanas Kamburov, Ulrich Stelzl, Ralf Herwig
2011 J jnl
PLoS Comput. Biol.
Rachel Cavill, Atanas Kamburov, James K. Ellis, Toby J. Athersuch, Marcus S. C. Blagrove, Ralf Herwig, Timothy M. D. Ebbels, Hector C. Keun
2011 J jnl
Nucleic Acids Res.
Atanas Kamburov, Konstantin Pentchev, Hanna Galicka, Christoph K. Wierling, Hans Lehrach, Ralf Herwig
2011 J jnl
Bioinform.
Atanas Kamburov, Rachel Cavill, Timothy M. D. Ebbels, Ralf Herwig, Hector C. Keun
2010 J jnl
Bioinform.
Axel Rasche, Ralf Herwig
2010 J jnl
Bioinform.
Konstantin Pentchev, Keiichiro Ono, Ralf Herwig, Trey Ideker, Atanas Kamburov
2009 J jnl
Nucleic Acids Res.
Atanas Kamburov, Christoph K. Wierling, Hans Lehrach, Ralf Herwig
2009 J jnl
Bioinform.
Hendrik Hache, Christoph K. Wierling, Hans Lehrach, Ralf Herwig
2009 J jnl
EURASIP J. Bioinform. Syst. Biol.
Hendrik Hache, Hans Lehrach, Ralf Herwig
2007 J jnl
BMC Bioinform.
Axel Rasche, Ralf Herwig
2005 J jnl
BMC Bioinform.
Witold E. Wolski, Maciej Lalowski, Peter Martus, Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert
2003 C conf
ECCB
Christoph Dieterich, Ralf Herwig, Martin Vingron
2002 J jnl
BMC Bioinform.
Christoph K. Wierling, Matthias Steinfath, Thorsten Elge, Steffen Schulze-Kremer, Pia Aanstad, Matthew Clark, Hans Lehrach, Ralf Herwig
2000 B conf
RECOMB
Steffen Hennig, Ralf Herwig, Matthew Clark, Pia Aanstad, A. Musa, John O'Brien, C. Bull, Uwe Radelof, Georgia Panopoulou, Albert J. Poustka, Hans Lehrach
2000 J jnl
Bioinform.
Ralf Herwig, Armin Otto Schmitt, Matthias Steinfath, John O'Brien, Henrik Seidel, Sebastian Meier-Ewert, Hans Lehrach, Uwe Radelof
redb/extractors/pe_extractor.py
← Index redb/extractors/pe_extractor.py python
import logging
from abc import ABCMeta, abstractmethod
import inspect

import magic
import pefile
from dotnetfile import DotNetPE

from redb.extractors.extractor import Extractor

logger = logging.getLogger(__name__)


@abstractmethod
class PEExtractor(Extractor, metaclass=ABCMeta):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        pe=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious
        )
        self.pe = pe if pe else self._generate_pefile_object()
        self.dotnet = None

    def _generate_pefile_object(self):
        pe = None
        try:
            pe = pefile.PE(self.filepath)
            if not pe:
                raise pefile.PEFormatError("Empty file?")
        except pefile.PEFormatError as e:
            self.log.error(f"Format error {self.hash.sha256} Full error : {e}")
        return pe

    def _generate_dotnetfile_object(self):
        self.log.debug(inspect.currentframe().f_code.co_name)
        dotnet = None
        error = None
        try:
            dotnet = DotNetPE(self.filepath)
            if not dotnet:
                raise Exception("Empty file?")
        except Exception as e:
            self.log.error(
                f"Format error dotnet file {self.hash.sha256} Full error : {e}"
            )
            error = e
        return dotnet, error

    def _check_dotnet(self):
        try:
            file_type = magic.from_buffer(self.binary)
            if ".Net" in file_type:
                return True
            for entry in self.pe.OPTIONAL_HEADER.DATA_DIRECTORY:
                # IMAGE_DIRECTORY_ENTRY_COM_DESCRIPTOR is typically 14
                if (
                    entry.name == "IMAGE_DIRECTORY_ENTRY_COM_DESCRIPTOR"
                    and entry.Size > 0
                ):
                    return True
            return False
        except AttributeError as e:
            self.log.error(
                f"AttributeError error dotnet file {self.hash.sha256} Full error : {e}"
            )
            return False

    def _is_signed(self):
        address = self.pe.OPTIONAL_HEADER.DATA_DIRECTORY[
            pefile.DIRECTORY_ENTRY["IMAGE_DIRECTORY_ENTRY_SECURITY"]
        ].VirtualAddress
        if address == 0:
            return False
        return True

    def _has_overlay(self):
        return bool(self.pe.get_overlay())