Ralf Herwig

26 papers B 1C 1Journal 23Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
PanThera: predictive analysis of higher-order combination therapies using deep neural networks.
Briefings Bioinform.
Pedro Alonso Campana, Paul Prasse, Ralf Herwig, Tobias Scheffer
2025 J jnl
Systematic analysis of hepatotoxicity: combining literature mining and AI language models.
Frontiers Artif. Intell.
Chris Bauer, Long Tran Duc Dang, Twan van den Beucken, Johannes Schuchhardt, Ralf Herwig
2023 J jnl
IsoTools: a flexible workflow for long-read transcriptome sequencing analysis.
Bioinform.
Matthias Lienhard, Twan van den Beucken, Bernd Timmermann, Myriam Hochradel, Stefan Börno, Florian Caiment, Martin Vingron, Ralf Herwig
2022 — conf
A bioinformatics workflow to detect genes with DNA methylation alterations: a case study of analyzing MeDIP-seq data in cardiac microtissue exposed to epirubicin.
ICBBB
Nhan Nguyen, Matthias Lienhard, Ralf Herwig, Jos Kleinjans, Danyel Jennen
2022 J jnl
ConsensusPathDB 2022: molecular interactions update as a resource for network biology.
Nucleic Acids Res.
Atanas Kamburov, Ralf Herwig
2016 J jnl
ToxDB: pathway-level interpretation of drug-treatment data.
Database J. Biol. Databases Curation
Christopher Hardt, Moritz Emanuel Beber, Axel Rasche, Atanas Kamburov, Dennie G. A. J. Hebels, Jos C. S. Kleinjans, Ralf Herwig
2015 J jnl
diXa: a data infrastructure for chemical safety assessment.
Bioinform.
Diana M. Hendrickx, Hugo J. W. L. Aerts, Florian Caiment, Dominic Clark, Timothy M. D. Ebbels, Chris T. A. Evelo, Hans Gmuender, Dennie G. A. J. Hebels, Ralf Herwig, Jürgen Hescheler, Danyel G. J. Jennen, Marlon J. A. Jetten, Stathis Kanterakis, Hector C. Keun, Vera Matser, John P. Overington, Ekaterina Pilicheva, Ugis Sarkans, Marcelo P. Segura-Lepe, Isaia Sotiriadou, Timo Wittenberger, Clemens Wittwehr, Antonella Zanzi, Jos C. S. Kleinjans
2014 J jnl
MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments.
Bioinform.
Matthias Lienhard, Christina Grimm, Markus Morkel, Ralf Herwig, Lukas Chavez
2013 J jnl
The ConsensusPathDB interaction database: 2013 update.
Nucleic Acids Res.
Atanas Kamburov, Ulrich Stelzl, Hans Lehrach, Ralf Herwig
2012 J jnl
Cluster-based assessment of protein-protein interaction confidence.
BMC Bioinform.
Atanas Kamburov, Arndt Grossmann, Ralf Herwig, Ulrich Stelzl
2012 J jnl
DIPSBC - data integration platform for systems biology collaborations.
BMC Bioinform.
Felix Dreher, Thomas Kreitler, Christopher Hardt, Atanas Kamburov, Reha Yildirimman, Karl Schellander, Hans Lehrach, Bodo M. H. Lange, Ralf Herwig
2012 J jnl
IntScore: a web tool for confidence scoring of biological interactions.
Nucleic Acids Res.
Atanas Kamburov, Ulrich Stelzl, Ralf Herwig
2011 J jnl
Consensus-Phenotype Integration of Transcriptomic and Metabolomic Data Implies a Role for Metabolism in the Chemosensitivity of Tumour Cells.
PLoS Comput. Biol.
Rachel Cavill, Atanas Kamburov, James K. Ellis, Toby J. Athersuch, Marcus S. C. Blagrove, Ralf Herwig, Timothy M. D. Ebbels, Hector C. Keun
2011 J jnl
ConsensusPathDB: toward a more complete picture of cell biology.
Nucleic Acids Res.
Atanas Kamburov, Konstantin Pentchev, Hanna Galicka, Christoph K. Wierling, Hans Lehrach, Ralf Herwig
2011 J jnl
Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA.
Bioinform.
Atanas Kamburov, Rachel Cavill, Timothy M. D. Ebbels, Ralf Herwig, Hector C. Keun
2010 J jnl
ARH: predicting splice variants from genome-wide data with modified entropy.
Bioinform.
Axel Rasche, Ralf Herwig
2010 J jnl
Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape.
Bioinform.
Konstantin Pentchev, Keiichiro Ono, Ralf Herwig, Trey Ideker, Atanas Kamburov
2009 J jnl
ConsensusPathDB - a database for integrating human functional interaction networks.
Nucleic Acids Res.
Atanas Kamburov, Christoph K. Wierling, Hans Lehrach, Ralf Herwig
2009 J jnl
GeNGe: systematic generation of gene regulatory networks.
Bioinform.
Hendrik Hache, Christoph K. Wierling, Hans Lehrach, Ralf Herwig
2009 J jnl
Reverse Engineering of Gene Regulatory Networks: A Comparative Study.
EURASIP J. Bioinform. Syst. Biol.
Hendrik Hache, Hans Lehrach, Ralf Herwig
2007 J jnl
T2DM-GeneMiner a web resource for meta-analysis and marker identification for type 2 diabetes mellitus.
BMC Bioinform.
Axel Rasche, Ralf Herwig
2005 J jnl
Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process.
BMC Bioinform.
Witold E. Wolski, Maciej Lalowski, Peter Martus, Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert
2003 C conf
Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites.
ECCB
Christoph Dieterich, Ralf Herwig, Martin Vingron
2002 J jnl
Simulation of DNA array hybridization experiments and evaluation of critical parameters during subsequent image and data analysis.
BMC Bioinform.
Christoph K. Wierling, Matthias Steinfath, Thorsten Elge, Steffen Schulze-Kremer, Pia Aanstad, Matthew Clark, Hans Lehrach, Ralf Herwig
2000 B conf
A data-analysis pipeline for large-scale gene expression analysis.
RECOMB
Steffen Hennig, Ralf Herwig, Matthew Clark, Pia Aanstad, A. Musa, John O'Brien, C. Bull, Uwe Radelof, Georgia Panopoulou, Albert J. Poustka, Hans Lehrach
2000 J jnl
Information theoretical probe selection for hybridisation experiments.
Bioinform.
Ralf Herwig, Armin Otto Schmitt, Matthias Steinfath, John O'Brien, Henrik Seidel, Sebastian Meier-Ewert, Hans Lehrach, Uwe Radelof