Rainer Merkl - RankMe

18 papers Journal 17

Year	Rank	Type	Title / Venue / Authors
2021	J	`jnl`	Rosetta design with co-evolutionary information retains protein function. PLoS Comput. Biol. Samuel Schmitz, Moritz Ertelt, Rainer Merkl, Jens Meiler
2020	J	`jnl`	Conserved genomic neighborhood is a strong but no perfect indicator for a direct interaction of microbial gene products. BMC Bioinform. Robert Esch, Rainer Merkl
2017	J	`jnl`	AGeNNT: annotation of enzyme families by means of refined neighborhood networks. BMC Bioinform. Florian Kandlinger, Maximilian G. Plach, Rainer Merkl
2017	J	`jnl`	Rosetta: MSF: a modular framework for multi-state computational protein design. PLoS Comput. Biol. Patrick Löffler, Samuel Schmitz, Enrico Hupfeld, Reinhard Sterner, Rainer Merkl
2015	J	`jnl`	An assessment of catalytic residue 3D ensembles for the prediction of enzyme function. BMC Bioinform. Clemens Zvácek, Gerald Friedrichs, Leonhard Heizinger, Rainer Merkl
2014	J	`jnl`	H2rs: Deducing evolutionary and functionally important residue positions by means of an entropy and similarity based analysis of multiple sequence alignments. BMC Bioinform. Jan-Oliver Janda, Ajmal Popal, Jochen Bauer, Markus Busch, Michael Klocke, Wolfgang Spitzer, Jörg Keller, Rainer Merkl
2013	J	`jnl`	CLIPS-4D: a classifier that distinguishes structurally and functionally important residue-positions based on sequence and 3D data. Bioinform. Jan-Oliver Janda, Andreas Meier, Rainer Merkl
2012	J	`jnl`	CLIPS-1D: analysis of multiple sequence alignments to deduce for residue-positions a role in catalysis, ligand-binding, or protein structure. BMC Bioinform. Jan-Oliver Janda, Markus Busch, Fabian Kück, Mikhail Porfenenko, Rainer Merkl
2011	J	`jnl`	Key2Ann: a tool to process sequence sets by replacing database identifiers with a human-readable annotation. J. Integr. Bioinform. Andreas Pürzer, Felix Grassmann, Dietmar Birzer, Rainer Merkl
2011	J	`jnl`	PROCOS: Computational analysis of protein-protein complexes. J. Comput. Chem. Florian Fink, Jochen Hochrein, Vincent Wolowski, Rainer Merkl, Wolfram Gronwald
2009	J	`jnl`	TransCent: Computational enzyme design by transferring active sites and considering constraints relevant for catalysis. BMC Bioinform. André Fischer, Nils Enkler, Gerd Neudert, Marco Bocola, Reinhard Sterner, Rainer Merkl
2006	J	`jnl`	AMIGOS: A Method for the Inspection of Genomic Organisation or Structure and its Application to Characterise Conserved Gene Arrangements. Silico Biol. Rainer Merkl
2006	J	`jnl`	Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. BMC Bioinform. Stephan Waack, Oliver Keller, Roman Asper, Thomas Brodag, Carsten Damm, Wolfgang Florian Fricke, Katharina Surovcik, Peter Meinicke, Rainer Merkl
2004	J	`jnl`	Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites. BMC Bioinform. Peter Meinicke, Maike Tech, Burkhard Morgenstern, Rainer Merkl
2004	J	`jnl`	SIGI: score-based identification of genomic islands. BMC Bioinform. Rainer Merkl
2003	—	`book`	Bioinformatik interaktiv - Algorithmen und Praxis. Rainer Merkl, Stephan Waack
2003	J	`jnl`	YACOP: Enhanced gene prediction obtained by a combination of existing methods. Silico Biol. Maike Tech, Rainer Merkl
2003	J	`jnl`	secureBLAST. Silico Biol. Arnim Wiezer, Rainer Merkl