Rainer Merkl

18 papers Journal 17
YearRankTypeTitle / Venue / Authors
2021 J jnl
Rosetta design with co-evolutionary information retains protein function.
PLoS Comput. Biol.
Samuel Schmitz, Moritz Ertelt, Rainer Merkl, Jens Meiler
2020 J jnl
Conserved genomic neighborhood is a strong but no perfect indicator for a direct interaction of microbial gene products.
BMC Bioinform.
Robert Esch, Rainer Merkl
2017 J jnl
AGeNNT: annotation of enzyme families by means of refined neighborhood networks.
BMC Bioinform.
Florian Kandlinger, Maximilian G. Plach, Rainer Merkl
2017 J jnl
Rosetta: MSF: a modular framework for multi-state computational protein design.
PLoS Comput. Biol.
Patrick Löffler, Samuel Schmitz, Enrico Hupfeld, Reinhard Sterner, Rainer Merkl
2015 J jnl
An assessment of catalytic residue 3D ensembles for the prediction of enzyme function.
BMC Bioinform.
Clemens Zvácek, Gerald Friedrichs, Leonhard Heizinger, Rainer Merkl
2014 J jnl
H2rs: Deducing evolutionary and functionally important residue positions by means of an entropy and similarity based analysis of multiple sequence alignments.
BMC Bioinform.
Jan-Oliver Janda, Ajmal Popal, Jochen Bauer, Markus Busch, Michael Klocke, Wolfgang Spitzer, Jörg Keller, Rainer Merkl
2013 J jnl
CLIPS-4D: a classifier that distinguishes structurally and functionally important residue-positions based on sequence and 3D data.
Bioinform.
Jan-Oliver Janda, Andreas Meier, Rainer Merkl
2012 J jnl
CLIPS-1D: analysis of multiple sequence alignments to deduce for residue-positions a role in catalysis, ligand-binding, or protein structure.
BMC Bioinform.
Jan-Oliver Janda, Markus Busch, Fabian Kück, Mikhail Porfenenko, Rainer Merkl
2011 J jnl
Key2Ann: a tool to process sequence sets by replacing database identifiers with a human-readable annotation.
J. Integr. Bioinform.
Andreas Pürzer, Felix Grassmann, Dietmar Birzer, Rainer Merkl
2011 J jnl
PROCOS: Computational analysis of protein-protein complexes.
J. Comput. Chem.
Florian Fink, Jochen Hochrein, Vincent Wolowski, Rainer Merkl, Wolfram Gronwald
2009 J jnl
TransCent: Computational enzyme design by transferring active sites and considering constraints relevant for catalysis.
BMC Bioinform.
André Fischer, Nils Enkler, Gerd Neudert, Marco Bocola, Reinhard Sterner, Rainer Merkl
2006 J jnl
AMIGOS: A Method for the Inspection of Genomic Organisation or Structure and its Application to Characterise Conserved Gene Arrangements.
Silico Biol.
Rainer Merkl
2006 J jnl
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models.
BMC Bioinform.
Stephan Waack, Oliver Keller, Roman Asper, Thomas Brodag, Carsten Damm, Wolfgang Florian Fricke, Katharina Surovcik, Peter Meinicke, Rainer Merkl
2004 J jnl
Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites.
BMC Bioinform.
Peter Meinicke, Maike Tech, Burkhard Morgenstern, Rainer Merkl
2004 J jnl
SIGI: score-based identification of genomic islands.
BMC Bioinform.
Rainer Merkl
2003 — book
Bioinformatik interaktiv - Algorithmen und Praxis.
Rainer Merkl, Stephan Waack
2003 J jnl
YACOP: Enhanced gene prediction obtained by a combination of existing methods.
Silico Biol.
Maike Tech, Rainer Merkl
2003 J jnl
secureBLAST.
Silico Biol.
Arnim Wiezer, Rainer Merkl