Rainer König

35 papers Misc 1Journal 22Unranked 11
YearRankTypeTitle / Venue / Authors
2022 J jnl
Linear programming based gene expression model (LPM-GEM) predicts the carbon source for Bacillus subtilis.
BMC Bioinform.
Kulwadee Thanamit, Franziska Hörhold, Marcus Oswald, Rainer König
2021 J jnl
Evaluating the effects of automation components in service networks of rail freight.
J. Rail Transp. Plan. Manag.
Tobias Pollehn, Moritz Ruf, Rainer König
2020 J jnl
Reprogramming of macrophages employing gene regulatory and metabolic network models.
PLoS Comput. Biol.
Franziska Hörhold, David Eisel, Marcus Oswald, Amol Kolte, Daniela Röll, Wolfram Osen, Stefan B. Eichmüller, Rainer König
2019 J jnl
Modelling TERT regulation across 19 different cancer types based on the MIPRIP 2.0 gene regulatory network approach.
BMC Bioinform.
Alexandra Poos, Theresa Kordaß, Amol Kolte, Volker Ast, Marcus Oswald, Karsten Rippe, Rainer König
2017 — conf
Segmentation of cell structures using Model-Based Set Covering with iterative reweighting.
ISBI
Peter Markowsky, Svenja Reith, Tabea E. Zuber, Rainer König, Karl Rohr, Christoph Schnörr
2016 — conf
The Use of Tools, Modelling Methods, Data Types, and Endpoints in Systems Medicine: A Survey on Projects of the German e: Med-Programme.
MIE
Matthias Gietzelt, Thomas Höfer, Petra Knaup-Gregori, Rainer König, Martin Löpprich, Alexandra Poos, Matthias Ganzinger
2014 J jnl
Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen.
PLoS Comput. Biol.
Apichat Suratanee, Martin H. Schaefer, Matthew J. Betts, Zita Soons, Heiko A. Mannsperger, Nathalie Harder, Marcus Oswald, Markus Gipp, Ellen Ramminger, Guillermo Marcus Martinez, Reinhard Männer, Karl Rohr, Erich E. Wanker, Robert B. Russell, Miguel A. Andrade-Navarro, Roland Eils, Rainer König
2014 J jnl
Estimating the activity of transcription factors by the effect on their target genes.
Bioinform.
Theresa Schacht, Marcus Oswald, Roland Eils, Stefan B. Eichmüller, Rainer König
2014 J jnl
Network topology-based detection of differential gene regulation and regulatory switches in cell metabolism and signaling.
BMC Syst. Biol.
Rosario M. Piro, Stefan Wiesberg, Gunnar Schramm, Nico Rebel, Marcus Oswald, Roland Eils, Gerhard Reinelt, Rainer König
2013 J jnl
Disease-gene discovery by integration of 3D gene expression and transcription factor binding affinities.
Bioinform.
Rosario M. Piro, Ivan Molineris, Ferdinando Di Cunto, Roland Eils, Rainer König
2013 J jnl
SplicingCompass: differential splicing detection using RNA-Seq data.
Bioinform.
Moritz Aschoff, Agnes Hotz-Wagenblatt, Karl-Heinz Glatting, Matthias Fischer, Roland Eils, Rainer König
2012 — conf
Cell Tracking for Automatic Migration and Proliferation Analysis in High-Throughput Screens.
Bildverarbeitung für die Medizin
Nathalie Harder, Richa Batra, Sina Gogolin, Nicolle Diessl, Roland Eils, Frank Westermann, Rainer König, Karl Rohr
2011 J jnl
RIP: the regulatory interaction predictor - a machine learning-based approach for predicting target genes of transcription factors.
Bioinform.
Tobias Bauer, Roland Eils, Rainer König
2010 J jnl
Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images.
Bioinform.
Apichat Suratanee, Ilka Rebhan, Petr Matula, Anil Kumar, Lars Kaderali, Karl Rohr, Ralf Bartenschlager, Roland Eils, Rainer König
2010 J jnl
Identifying essential genes in bacterial metabolic networks with machine learning methods.
BMC Syst. Biol.
Kitiporn Plaimas, Roland Eils, Rainer König
2010 J jnl
PathWave: discovering patterns of differentially regulated enzymes in metabolic pathways.
Bioinform.
Gunnar Schramm, Stefan Wiesberg, Nicolle Diessl, Anna-Lena Kranz, Vitalia Sagulenko, Marcus Oswald, Gerhard Reinelt, Frank Westermann, Roland Eils, Rainer König
2010 J jnl
Regulation patterns in signaling networks of cancer.
BMC Syst. Biol.
Gunnar Schramm, Nandakumar Kannabiran, Rainer König
2009 — conf
Analyzing the regulation of metabolic pathways in human breast cancer.
LWA
Eva-Maria Surmann, Gunnar Schramm, Stefan Wiesberg, Marcus Oswald, Gerhard Reinelt, Roland Eils, Rainer König
2009 Misc conf
Haralick's Texture Features Computation Accelerated by GPUs for Biological Applications.
HPSC
Markus Gipp, Guillermo Marcus Martinez, Nathalie Harder, Apichat Suratanee, Karl Rohr, Rainer König, Reinhard Männer
2008 J jnl
Machine learning based analyses on metabolic networks supports high-throughput knockout screens.
BMC Syst. Biol.
Kitiporn Plaimas, Jan-Phillip Mallm, Marcus Oswald, Fabian Svara, Victor Sourjik, Roland Eils, Rainer König
2007 — conf
Integrating Genomic and Transcriptomic Data into Graph Based Approaches for Defining Essential Reactions in the Metabolic Network of Escherichia Coli.
LWA
Kitiporn Plaimas, Marcus Oswald, Roland Eils, Rainer König
2007 J jnl
Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of
BMC Bioinform.
Gunnar Schramm, Marc Zapatka, Roland Eils, Rainer König
2006 J jnl
Discovering functional gene expression patterns in the metabolic network of
BMC Bioinform.
Rainer König, Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils
2006 J jnl
GOPET: A tool for automated predictions of Gene Ontology terms.
BMC Bioinform.
Arunachalam Vinayagam, Coral del Val, Falk Schubert, Roland Eils, Karl-Heinz Glatting, Sándor Suhai, Rainer König
2006 — conf
Pattern recognition of gene expression data on biochemical networks with simple wavelet transforms.
LWA
Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils, Rainer König
2004 J jnl
Applying Support Vector Machines for Gene ontology based gene function prediction.
BMC Bioinform.
Arunachalam Vinayagam, Rainer König, Jutta Moormann, Falk Schubert, Roland Eils, Karl-Heinz Glatting, Sándor Suhai
2004 J jnl
Gene expression analysis on biochemical networks using the Potts spin model.
Bioinform.
Rainer König, Roland Eils
2003 — conf
Gene expression analysis on biochemical networks with the potts spin model.
German Conference on Bioinformatics
Rainer König, Roland Eils
2002 — conf
Modelling of Information Flows in Cells.
ESM
Marco Weismueller, Rainer König, Roland Eils
1999 J jnl
Media Oriented Systems Transport (MOST®) - Standard für Multimedia Networking im Fahrzeug / Media Oriented Systems Transport - Standard for Multimedia Networking in Vehicle Environment.
Informationstechnik Tech. Inform.
Rainer König, Christian Thiel
1993 J jnl
A Prototype of an Interface Bilder for the Common Lisp Interface Manager - CLIB.
ACM SIGPLAN Notices
Jan Hesse, Rainer König, Filippo Logi, Jens Herder
1992 — conf
Informationstechnik für den Verkehr - Medizin oder Droge?
Informatik cui bono?
Dirk-Michael Harmsen, Rainer König
1991 — conf
Möglichkeiten und Grenzen von "Cooperative Work".
GI Jahrestagung
Rainer König, Peter Zoche
1990 — conf
Chancen des Einsatzes öffentlicher Datennetze bei der umweltverträglichen Steuerung des Personennahverkehrs.
Informatik für den Umweltschutz
Peter Zoche, Rainer König
1980 — —
Petri-Netze und ihre Verwendung zum standardisierten Entwurf digitaler Steuerungen.
Rainer König