Raheleh Salari

19 papers B 3C 4Misc 1Journal 11
YearRankTypeTitle / Venue / Authors
2014 J jnl
Fast and Scalable Inference of Multi-Sample Cancer Lineages.
CoRR
Victoria Popic, Raheleh Salari, Iman Hajirasouliha, Dorna Kashef Haghighi, Robert B. West, Serafim Batzoglou
2013 B conf
Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery.
RECOMB
Raheleh Salari, Syed Shayon Saleh, Dorna Kashef Haghighi, David Khavari, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou
2013 J jnl
Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery.
J. Comput. Biol.
Raheleh Salari, Syed Shayon Saleh, Dorna Kashef Haghighi, David Khavari, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou
2013 Misc conf
Module Cover - A New Approach to Genotype-Phenotype Studies.
Pacific Symposium on Biocomputing
Yoo-Ah Kim, Raheleh Salari, Stefan Wuchty, Teresa M. Przytycka
2012 B conf
Detecting SNP-Induced Structural Changes in RNA: Application to Disease Studies.
RECOMB
Raheleh Salari, Chava Kimchi-Sarfaty, Michael M. Gottesman, Teresa M. Przytycka
2012 J jnl
Teasing Apart Translational and Transcriptional Components of Stochastic Variations in Eukaryotic Gene Expression.
PLoS Comput. Biol.
Raheleh Salari, Damian Wójtowicz, Jie Zheng, David Levens, Yitzhak Pilpel, Teresa M. Przytycka
2010 J jnl
Fast prediction of RNA-RNA interaction.
Algorithms Mol. Biol.
Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp
2010 J jnl
Inferring cancer subnetwork markers using density-constrained biclustering.
Bioinform.
Phuong Dao, Recep Colak, Raheleh Salari, Flavia Moser, Elai Davicioni, Alexander Schönhuth, Martin Ester
2010 C conf
Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties.
WABI
Alexander Schönhuth, Raheleh Salari, Süleyman Cenk Sahinalp
2010 J jnl
Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets.
J. Comput. Biol.
Fereydoun Hormozdiari, Raheleh Salari, Vineet Bafna, Süleyman Cenk Sahinalp
2010 C conf
Sparsification of RNA Structure Prediction Including Pseudoknots.
WABI
Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp
2010 J jnl
Sparsification of RNA structure prediction including pseudoknots.
Algorithms Mol. Biol.
Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp
2010 B conf
Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding.
RECOMB
Raheleh Salari, Mathias Möhl, Sebastian Will, Süleyman Cenk Sahinalp, Rolf Backofen
2010 J jnl
Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length.
J. Comput. Biol.
Alexander Schönhuth, Raheleh Salari, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp
2009 J jnl
A partition function algorithm for interacting nucleic acid strands.
Bioinform.
Hamidreza Chitsaz, Raheleh Salari, Süleyman Cenk Sahinalp, Rolf Backofen
2009 C conf
Fast Prediction of RNA-RNA Interaction.
WABI
Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp
2009 J jnl
The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study.
J. Comput. Biol.
Fereydoun Hormozdiari, Raheleh Salari, Michael Hsing, Alexander Schönhuth, Simon K. Chan, Süleyman Cenk Sahinalp, Artem Cherkasov
2008 C conf
The Relation between Indel Length and Functional Divergence: A Formal Study.
WABI
Raheleh Salari, Alexander Schönhuth, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp
2007 J jnl
taveRNA: a web suite for RNA algorithms and applications.
Nucleic Acids Res.
Cagri Aksay, Raheleh Salari, Emre Karakoç, Can Alkan, Süleyman Cenk Sahinalp