Ragnar Groot Koerkamp

17 papers B 4C 2Journal 11
YearRankTypeTitle / Venue / Authors
2026 J jnl
QuadRank: Engineering a High Throughput Rank.
CoRR
Ragnar Groot Koerkamp
2025 J jnl
A near-tight lower bound on the density of forward sampling schemes.
Bioinform.
Bryce Kille, Ragnar Groot Koerkamp, Drake McAdams, Alan Liu, Todd J. Treangen
2025 J jnl
Compressing Suffix Trees by Path Decompositions.
CoRR
Ruben Becker, Davide Cenzato, Travis Gagie, Sung-Hwan Kim, Ragnar Groot Koerkamp, Giovanni Manzini, Nicola Prezza
2025 B conf
PtrHash: Minimal Perfect Hashing at RAM Throughput.
SEA
Ragnar Groot Koerkamp
2025 J jnl
PtrHash: Minimal Perfect Hashing at RAM Throughput.
CoRR
Ragnar Groot Koerkamp
2025 B conf
SimdMinimizers: Computing Random Minimizers, fast.
SEA
Ragnar Groot Koerkamp, Igor Martayan
2025 J jnl
The open-closed mod-minimizer algorithm.
Algorithms Mol. Biol.
Ragnar Groot Koerkamp, Daniel Liu, Giulio Ermanno Pibiri
2025 B conf
U-Index: A Universal Indexing Framework for Matching Long Patterns.
SEA
Lorraine A. K. Ayad, Gabriele Fici, Ragnar Groot Koerkamp, Grigorios Loukides, Rob Patro, Giulio Ermanno Pibiri, Solon P. Pissis
2025 J jnl
U-index: A Universal Indexing Framework for Matching Long Patterns.
CoRR
Lorraine A. K. Ayad, Gabriele Fici, Ragnar Groot Koerkamp, Grigorios Loukides, Rob Patro, Giulio Ermanno Pibiri, Solon P. Pissis
2024 C conf
A*PA2: Up to 19× Faster Exact Global Alignment.
WABI
Ragnar Groot Koerkamp
2024 J jnl
Exact global alignment using A* with chaining seed heuristic and match pruning.
Bioinform.
Ragnar Groot Koerkamp, Pesho Ivanov
2024 B conf
PACE Solver Description: OCMu64, a Solver for One-Sided Crossing Minimization.
IPEC
Ragnar Groot Koerkamp, Mees J. de Vries
2024 C conf
The {mod-minimizer}: A Simple and Efficient Sampling Algorithm for Long k-Mers.
WABI
Ragnar Groot Koerkamp, Giulio Ermanno Pibiri
2021 J jnl
On rainbow-free colourings of uniform hypergraphs.
CoRR
Ragnar Groot Koerkamp, Stanislav Zivný
2021 J jnl
On rainbow-free colourings of uniform hypergraphs.
Theor. Comput. Sci.
Ragnar Groot Koerkamp, Stanislav Zivný
2019 J jnl
Stable gonality is computable.
Discret. Math. Theor. Comput. Sci.
Ragnar Groot Koerkamp, Marieke van der Wegen
2018 J jnl
Stable gonality is computable.
CoRR
Ragnar Groot Koerkamp, Marieke van der Wegen