Rafael Santos

24 papers C 3Journal 10Unranked 11
YearRankTypeTitle / Venue / Authors
2026 J jnl
J. Interact. Syst.
Rafael Santos, André Sant'Anna, Luan Machado, Lucas Santos, Márcio Soussa
2025 J jnl
IEEE Open J. Commun. Soc.
Rafael Santos, Daniel Castanheira, Adão Silva, Atílio Gameiro
2025 J jnl
Int. J. Circuit Theory Appl.
Marcus V. M. Rodrigues, Rafael Santos, Luis De Oro Arenas, Fernando Pinhabel Marafao, Flávio Alessandro Serrão Gonçalves
2024 conf
GLOBECOM (Workshops)
Rafael Santos, Daniel Castanheira, Adão Silva, Atílio Gameiro
2024 J jnl
Int. J. Circuit Theory Appl.
Rodrigo P. Diver, Rafael Santos, Flávio Alessandro Serrão Gonçalves
2024 conf
ISC2
Lara Sucupira Furtado, Nicolas Monteiro, Nayara Gurjão, Rivelino M. Cavalcante, José Edilson Silva Filho, Jarbas Aryel Nunes da Silveira, Rafael Santos, Jorge Barbosa Soares, José Antônio Fernandes de Macêdo
2024 J jnl
IEEE Access
Rafael Santos, Daniel Castanheira, Adão Silva, Atílio Gameiro
2024 conf
ICC Workshops
Rafael Santos, Daniel Castanheira, Adão Silva, Atílio Gameiro
2023 J jnl
Bioinform.
Elisabeth Coudert, Sebastien Gehant, Edouard De Castro, Monica Pozzato, Delphine Baratin, Teresa Batista Neto, Christian J. A. Sigrist, Nicole Redaschi, Alan J. Bridge, Lucila Aimo, Ghislaine Argoud-Puy, Andrea H. Auchincloss, Kristian B. Axelsen, Parit Bansal, Marie-Claude Blatter, Jerven T. Bolleman, Emmanuel Boutet, Lionel Breuza, Blanca Cabrera Gil, Cristina Casals-Casas, Kamal Chikh Echioukh, Béatrice A. Cuche, Anne Estreicher, Maria Livia Famiglietti, Marc Feuermann, Elisabeth Gasteiger, Pascale Gaudet, Vivienne Baillie Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Chantal Hulo, Nevila Hyka-Nouspikel, Florence Jungo, Arnaud Kerhornou, Philippe Le Mercier, Damien Lieberherr, Patrick Masson, Anne Morgat, Venkatesh Muthukrishnan, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Lucille Pourcel, Sylvain Poux, Manuela Pruess, Catherine Rivoire, Karin Sonesson, Shyamala Sundaram, Alex Bateman, Maria Jesus Martin, Sandra E. Orchard, Michele Magrane, Shadab Ahmad, Emanuele Alpi, Emily H. Bowler-Barnett, Ramona Britto, Hema Bye-A-Jee, Austra Cukura, Paul Denny, Tunca Dogan, Thankgod Ebenezer, Jun Fan, Penelope Garmiri, Leonardo Jose da Costa Gonzales, Emma Hatton-Ellis, Abdulrahman Hussein, Alexandr Ignatchenko, Giuseppe Insana, Rizwan Ishtiaq, Vishal Joshi, Dushyanth Jyothi, Swaathi Kandasamy, Antonia Lock, Aurelien Luciani, Marija Lugaric, Jie Luo, Yvonne Lussi, Alistair MacDougall, Fábio Madeira, Mahdi Mahmoudy, Alok Mishra, Katie Moulang, Andrew Nightingale, Sangya Pundir, Guoying Qi, Shriya Raj, Pedro Raposo, Daniel Rice, Rabie Saidi, Rafael Santos, Elena Speretta, James D. Stephenson, Prabhat Totoo, Edward Turner, Nidhi Tyagi, Preethi Vasudev, Kate Warner, Xavier Watkins, Rossana Zaru, Hermann Zellner, Cathy H. Wu, Cecilia N. Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, Hongzhan Huang, Kati Laiho, Peter B. McGarvey, Darren A. Natale, Karen Ross, C. R. Vinayaka, Qinghua Wang, Yuqi Wang
2023 J jnl
IEEE Access
Rafael Santos, Daniel Castanheira, Adão Silva, Atílio Gameiro
2020 C conf
FIE
Rita Carolina Alamino Borges da Costa, André Vargas, Cléo Z. Billa, Rafael Santos, Regina Barwaldt, Silvia Botelho
2020 conf
DCIS
Rafael Santos, João Afonso, José Monteiro
2020 J jnl
Quantum
Debashis Saha, Rafael Santos, Remigiusz Augusiak
2018 J jnl
Sensors
Cesar Giron Camerini, João Marcos Alcoforado Rebello, Lucas Braga, Rafael Santos, Tomasz Chady, Grzegorz Psuj, Gabriela Pereira
2017 conf
SIMBig
Thiago Luís Viana de Santana, Rafael Santos
2015 conf
ICCSA (1)
Rafael Santos, Bruno Nogueira Luz, Valéria Farinazzo Martins, Diego Roberto Colombo Dias, Marcelo de Paiva Guimarães
2015 C conf
CLEI
Bruno Nogueira Luz, Rafael Santos, Andreza S. Areao, Marcos H. Yokoyama, Luiz Egidio Cunha, Valéria Farinazzo Martins Salvador, Marcelo de Paiva Guimarães
2014 conf
IHC
Taciana Pontual Falcão, Rafael Santos, Alcantara Rodrigues, Pedro Silva
2014 conf
ECC
Marcos Guillen, Jean-François Dulhoste, Gildas Besançon, Ignácio Rubio Scola, Rafael Santos, Didier Georges
2013 conf
ALCOSP
Gildas Besançon, Marcos Guillen, Jean-François Dulhoste, Rafael Santos, Ignácio Rubio Scola
2007 conf
ASAP
Alexandra Aguiar, Márcio Eduardo Kreutz, Rafael Santos, Tatiana Santos
2004 J jnl
RITA
Rafael Santos
2002 conf
WOB
Rafael Santos, José Humberto Machado Tambor, Luciana Campos Paulino, Ana L. C. Bazzan
2001 C conf
PDP
Ronaldo Gonçalves, Maurício L. Pilla, Guilherme Dal Pizzol, Tatiana Gadelha Serra dos Santos, Philippe Olivier Alexandre Navaux, Rafael Santos
docs/apk-code-schema.md
← Index docs/apk-code-schema.md markdown
# APK Code Analysis — ClickHouse Schema

All tables follow the `ReplacingMergeTree(analysis_date)` pattern from
`docs/new-code-binja-schema.md`, except `code_apk_analysis_errors` which
uses `MergeTree()`.

**Companion PDD:** `APK_CODE_ANALYSIS_PDD-Tech_Annex.md` §7

---

## Table overview

| # | Table | Analog (Binja) | Engine | Key |
|---|-------|----------------|--------|-----|
| 1 | `code_apk_decompiled_methods_content` | `code_binja_decompiled_functions_content` | ReplacingMergeTree | `decompiled_method_hash` |
| 2 | `code_apk_decompiled_methods_references` | `code_binja_decompiled_functions_references` | ReplacingMergeTree | `(sha256, decompiled_method_hash)` |
| 3 | `code_apk_smali_methods_content` | `code_binja_disassembled_functions_content` | ReplacingMergeTree | `smali_method_hash` |
| 4 | `code_apk_smali_methods_references` | `code_binja_disassembled_functions_references` | ReplacingMergeTree | `(sha256, smali_method_hash)` |
| 5 | `code_apk_method_similarity_metrics` | `code_binja_function_similarity_metrics` | ReplacingMergeTree | `smali_method_hash` |
| 6 | `code_apk_cfg_methods` | `code_binja_cfg_functions` | ReplacingMergeTree | `smali_method_hash` |
| 7 | `code_binja_strings_raw` *(shared)* | — | Null (→ MV) | — |
| 8 | `code_apk_analysis_errors` | `function_analysis_errors_binja` | MergeTree | `(sha256, error_location, error_hash)` |

---

## Table 1: `code_apk_decompiled_methods_content`

**Analog:** `code_binja_decompiled_functions_content`

```sql
CREATE TABLE IF NOT EXISTS code_apk_decompiled_methods_content (
    decompiled_method_hash FixedString(64),          -- SHA-256 of normalized Java source
    decompiled_method String CODEC(ZSTD(3)),          -- Full Java method source
    decompiled_method_type Enum8('USER'=1, 'LIBRARY'=2, 'UNKNOWN'=5) DEFAULT 'UNKNOWN',
    decompiled_has_string_encryption UInt8 DEFAULT 0,
    decompiled_has_reflection_calls UInt8 DEFAULT 0,
    decompiled_excessive_goto_count UInt8 DEFAULT 0,
    analysis_date DateTime64(3, 'UTC'),

    INDEX idx_method_content_token lower(decompiled_method) TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1
) ENGINE = ReplacingMergeTree(analysis_date)
ORDER BY decompiled_method_hash;
```

## Table 2: `code_apk_decompiled_methods_references`

**Analog:** `code_binja_decompiled_functions_references`

```sql
CREATE TABLE IF NOT EXISTS code_apk_decompiled_methods_references (
    sha256 FixedString(64),
    decompiled_method_hash FixedString(64),
    smali_method_hash Nullable(FixedString(64)),
    decompiled_class_name LowCardinality(String),
    decompiled_method_name LowCardinality(String),
    decompiled_method_signature String,               -- Dalvik descriptor: (Landroid/os/Bundle;)V
    decompiled_method_prototype String,               -- Java-style: void onCreate(Bundle)
    functions_caller Array(String),
    functions_call Array(String),
    analysis_date DateTime64(3, 'UTC'),

    INDEX idx_decompiled_class_name decompiled_class_name TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1,
    INDEX idx_decompiled_method_name decompiled_method_name TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1,
    INDEX idx_functions_caller functions_caller TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1,
    INDEX idx_functions_call functions_call TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1
) ENGINE = ReplacingMergeTree(analysis_date)
ORDER BY (sha256, decompiled_method_hash);
```

## Table 3: `code_apk_smali_methods_content`

**Analog:** `code_binja_disassembled_functions_content`

```sql
CREATE TABLE IF NOT EXISTS code_apk_smali_methods_content (
    smali_method_hash FixedString(64),                -- SHA-256 of normalized smali body
    smali_method String CODEC(ZSTD(3)),               -- Full smali method body
    smali_method_type Enum8('USER'=1, 'LIBRARY'=2, 'UNKNOWN'=5) DEFAULT 'UNKNOWN',
    smali_instructions_count UInt32,
    smali_register_count UInt16,
    smali_has_string_encryption UInt8 DEFAULT 0,
    smali_has_reflection_calls UInt8 DEFAULT 0,
    smali_excessive_goto_count UInt8 DEFAULT 0,
    smali_flattened_score Float64 DEFAULT 0.0,       -- Control flow flattening score (0.01.0)
    smali_mba_score Float64 DEFAULT 0.0,             -- Mixed boolean-arithmetic score (0.01.0)
    analysis_date DateTime64(3, 'UTC'),

    INDEX idx_smali_ngram smali_method TYPE ngrambf_v1(3, 32768, 3, 0) GRANULARITY 1,
    INDEX idx_smali_method_type smali_method_type TYPE set(3) GRANULARITY 1,
    INDEX idx_smali_instr_count smali_instructions_count TYPE minmax GRANULARITY 4,
    INDEX idx_smali_reg_count smali_register_count TYPE minmax GRANULARITY 4,
    INDEX idx_smali_flattened smali_flattened_score TYPE minmax GRANULARITY 4,
    INDEX idx_smali_mba smali_mba_score TYPE minmax GRANULARITY 4
) ENGINE = ReplacingMergeTree(analysis_date)
ORDER BY smali_method_hash;
```

## Table 4: `code_apk_smali_methods_references`

**Analog:** `code_binja_disassembled_functions_references`

```sql
CREATE TABLE IF NOT EXISTS code_apk_smali_methods_references (
    sha256 FixedString(64),
    smali_method_hash FixedString(64),
    decompiled_method_hash Nullable(FixedString(64)),
    smali_class_name LowCardinality(String),
    smali_method_name LowCardinality(String),
    smali_method_signature String,
    analysis_date DateTime64(3, 'UTC'),

    INDEX idx_smali_class_name smali_class_name TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1,
    INDEX idx_smali_method_name smali_method_name TYPE tokenbf_v1(32768, 3, 0) GRANULARITY 1
) ENGINE = ReplacingMergeTree(analysis_date)
ORDER BY (sha256, smali_method_hash);
```

## Table 5: `code_apk_method_similarity_metrics`

**Analog:** `code_binja_function_similarity_metrics`

Content-based fuzzy matching table. Structural/CFG scalars (block_count, edge_count, etc.)
are in `code_apk_cfg_methods` (Table 6) — this table holds only fuzzy hashes and MinHash.

```sql
CREATE TABLE IF NOT EXISTS code_apk_method_similarity_metrics (
    smali_method_hash FixedString(64),
    -- Raw smali fuzzy hashes (analog: ssdeep_disassembly / tlsh_disassembly)
    ssdeep_smali Nullable(String),
    tlsh_smali Nullable(FixedString(72)),
    -- Semantically normalized smali fuzzy hashes (analog: ssdeep_llil / tlsh_llil)
    ssdeep_smali_normalized Nullable(String),
    tlsh_smali_normalized Nullable(FixedString(72)),
    minhash Array(UInt8),
    analysis_date DateTime64(3, 'UTC'),

    INDEX idx_ssdeep ssdeep_smali TYPE bloom_filter GRANULARITY 1,
    INDEX idx_tlsh tlsh_smali TYPE bloom_filter GRANULARITY 1,
    INDEX idx_ssdeep_norm ssdeep_smali_normalized TYPE bloom_filter GRANULARITY 1,
    INDEX idx_tlsh_norm tlsh_smali_normalized TYPE bloom_filter GRANULARITY 1
) ENGINE = ReplacingMergeTree(analysis_date)
ORDER BY smali_method_hash;
```

## Table 6: `code_apk_cfg_methods`

**Analog:** `code_binja_cfg_functions` (see `db_migration/cfg_functions_ddl.sql`)

Structural and topological features computed from smali CFG. All fields mirror
the Binja table with APK-appropriate naming.

```sql
CREATE TABLE IF NOT EXISTS code_apk_cfg_methods (
    -- Identity
    smali_method_hash FixedString(64),

    -- Tier 0: Exact structural match
    cfg_topology_hash FixedString(16),

    -- Tier 1: Structural pre-filtering
    block_count UInt16,
    edge_count UInt16,
    cfg_instructions_count UInt32,            -- Dalvik instruction count (analog: llil_total_operations)
    call_count UInt16,
    cyclomatic_complexity UInt16,
    loop_count UInt16,
    max_depth UInt16,
    max_fan_out UInt16,
    md_index_topdown UInt64,
    md_index_bottomup UInt64,
    prime_product_smali UInt64,              -- Dalvik semantic primes (analog: prime_product_llil)

    -- Tier 2: Fuzzy matching
    cfg_feature_tlsh Nullable(FixedString(72)),
    wl_minhash Array(UInt8),

    -- Embedding-ready storage
    bb_features Array(Array(UInt16)),        -- ACFG block feature vectors
    cfg_adjacency Array(UInt32),             -- Packed (src << 16 | tgt)

    analysis_date DateTime64(3, 'UTC'),

    -- Indexes
    INDEX idx_topology cfg_topology_hash TYPE bloom_filter GRANULARITY 1,
    INDEX idx_complexity cyclomatic_complexity TYPE minmax GRANULARITY 4,
    INDEX idx_block_count block_count TYPE minmax GRANULARITY 4,
    INDEX idx_edge_count edge_count TYPE minmax GRANULARITY 4,
    INDEX idx_call_count call_count TYPE minmax GRANULARITY 4,
    INDEX idx_cfg_instr_count cfg_instructions_count TYPE minmax GRANULARITY 4,
    INDEX idx_loop_count loop_count TYPE minmax GRANULARITY 4,
    INDEX idx_max_depth max_depth TYPE minmax GRANULARITY 4,
    INDEX idx_max_fan_out max_fan_out TYPE minmax GRANULARITY 4,
    INDEX idx_md_topdown md_index_topdown TYPE minmax GRANULARITY 4,
    INDEX idx_md_bottomup md_index_bottomup TYPE minmax GRANULARITY 4,
    INDEX idx_prime prime_product_smali TYPE bloom_filter GRANULARITY 1,
    INDEX idx_cfg_tlsh cfg_feature_tlsh TYPE bloom_filter GRANULARITY 1
) ENGINE = ReplacingMergeTree(analysis_date)
ORDER BY smali_method_hash;
```

**Column mapping (APK → Binja):**

| APK column | Binja column | Notes |
|------------|-------------|-------|
| `smali_method_hash` | `disassembled_function_hash` | Both SHA-256 of normalized code |
| `cfg_instructions_count` | `llil_total_operations` | Dalvik instructions vs LLIL operations |
| `prime_product_smali` | `prime_product_llil` | Same prime algorithm, Dalvik semantic categories |
| All others | Same name | Identical algorithms from shared `cfg_features.py` |

## Table 7: `code_binja_strings_raw` (shared)

APK strings are inserted into the existing `code_binja_strings_raw` Null-engine table,
which feeds materialized views (`code_binja_strings_by_binary`, `mv_string_popularity_public`).
This enables cross-format string correlation between PE/ELF/Mach-O/APK samples.

No new table creation needed — see `docs/new-code-binja-schema.md` for the existing DDL.

## Table 8: `code_apk_analysis_errors`

**Analog:** `function_analysis_errors_binja`

```sql
CREATE TABLE IF NOT EXISTS code_apk_analysis_errors (
    sha256 FixedString(64),
    class_name Nullable(String) CODEC(ZSTD(3)),
    method_name Nullable(String) CODEC(ZSTD(3)),
    error_location LowCardinality(String) CODEC(ZSTD(3)),   -- 'jadx', 'apktool', 'androguard', 'analysis'
    error_message Nullable(String) CODEC(ZSTD(3)),
    error_type Nullable(String) CODEC(ZSTD(3)),
    error_hash FixedString(32),                               -- MD5 for dedup
    status Enum8('new' = 1, 'investigating' = 2, 'fixed' = 3, 'wontfix' = 4) DEFAULT 'new',
    analysis_date DateTime64(3, 'UTC')
) ENGINE = MergeTree()
ORDER BY (sha256, error_location, error_hash);
```