Rafael Najmanovich

17 papers C 1Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
Understanding and Predicting Ligand Efficacy in the μ-Opioid Receptor through Quantitative Dynamical Analysis of Complex Structures.
J. Chem. Inf. Model.
Gabriel T. Galdino, Olivier Mailhot, Rafael Najmanovich
2023 J jnl
Surfaces: a software to quantify and visualize interactions within and between proteins and ligands.
Bioinform.
Natália Teruel, Vinicius Magalhães Borges, Rafael Najmanovich
2023 J jnl
The DynaSig-ML Python package: automated learning of biomolecular dynamics-function relationships.
Bioinform.
Olivier Mailhot, François Major, Rafael Najmanovich
2022 J jnl
SPEAR: Systematic ProtEin AnnotatoR.
Bioinform.
Matthew Crown, Natália Teruel, Rafael Najmanovich, Matthew Bashton
2021 J jnl
The NRGTEN Python package: an extensible toolkit for coarse-grained normal mode analysis of proteins, nucleic acids, small molecules and their complexes.
Bioinform.
Olivier Mailhot, Rafael Najmanovich
2016 J jnl
IsoMIF Finder: online detection of binding site molecular interaction field similarities.
Bioinform.
Matthieu Chartier, Etienne Adriansen, Rafael Najmanovich
2016 — conf
Parsing and model generation for biological processes.
SpringSim (TMS-DEVS)
Laouen Belloli, Gabriel A. Wainer, Rafael Najmanovich
2015 J jnl
Detection of Binding Site Molecular Interaction Field Similarities.
J. Chem. Inf. Model.
Matthieu Chartier, Rafael Najmanovich
2014 J jnl
A curated C. difficile strain 630 metabolic network: prediction of essential targets and inhibitors.
BMC Syst. Biol.
Mathieu Larocque, Thierry Chénard, Rafael Najmanovich
2012 J jnl
Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events.
Bioinform.
Matthieu Chartier, Francis Gaudreault, Rafael Najmanovich
2012 J jnl
Side-chain rotamer changes upon ligand binding: common, crucial, correlate with entropy and rearrange hydrogen bonding.
Bioinform.
Francis Gaudreault, Matthieu Chartier, Rafael Najmanovich
2011 J jnl
Structural Chemistry of the Histone Methyltransferases Cofactor Binding Site.
J. Chem. Inf. Model.
Valérie Campagna-Slater, Man Wai Mok, Kong T. Nguyen, Miklos Feher, Rafael Najmanovich, Matthieu Schapira
2008 C conf
Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
ECCB
Rafael Najmanovich, Natalja Kurbatova, Janet M. Thornton
2007 J jnl
Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family.
Bioinform.
Rafael Najmanovich, Abdellah Allali-Hassani, Richard J. Morris, Ludmila Dombrovsky, Patricia W. Pan, Masoud Vedadi, Alexander N. Plotnikov, Aled M. Edwards, Cheryl H. Arrowsmith, Janet M. Thornton
2005 J jnl
Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.
Bioinform.
Richard J. Morris, Rafael Najmanovich, Abdullah Kahraman, Janet M. Thornton
2004 J jnl
Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins.
J. Comput. Chem.
Eran Eyal, Rafael Najmanovich, Brendan J. McConkey, Marvin Edelman, Vladimir Sobolev
2001 J jnl
MutaProt: a web interface for structural analysis of point mutations.
Bioinform.
Eran Eyal, Rafael Najmanovich, Vladimir Sobolev, Marvin Edelman