Radhakrishnan Nagarajan

34 papers Journal 25Unranked 8
YearRankTypeTitle / Venue / Authors
2024 J jnl
J. Am. Medical Informatics Assoc.
Nephi A. Walton, Radhakrishnan Nagarajan, Chen Wang, Murat Sincan, Robert R. Freimuth, David B. Everman, Derek C. Walton, Scott P. McGrath, Dominick J. Lemas, Panayiotis V. Benos, Alexander V. Alekseyenko, Qianqian Song, Ece D. Gamsiz Uzun, Casey Overby Taylor, Alper Uzun, Thomas N. Person, Nadav Rappoport, Zhongming Zhao, Marc S. Williams
2020 conf
ECOC
Radhakrishnan Nagarajan, Ilya Lyubomirsky
2019 J jnl
CoRR
Radhakrishnan Nagarajan
2019 J jnl
Briefings Bioinform.
Jessica D. Tenenbaum, Krithika Bhuvaneshwar, Jane P. Gagliardi, Kate Fultz Hollis, Peilin Jia, Liang Ma, Radhakrishnan Nagarajan, Gopalkumar Rakesh, Vignesh Subbian, Shyam Visweswaran, Zhongming Zhao, Leon Rozenblit
2018 J jnl
JOCN
Radhakrishnan Nagarajan, Mark Filer, Yang Fu, Masaki Kato, Todd Rope, James Stewart
2017 conf
OFC
Mark Filer, Steven Searcy, Yang Fu, Radhakrishnan Nagarajan, Sorin Tibuleac
2017 conf
CRI
Radhakrishnan Nagarajan, Jeffery C. Talbert
2016 conf
Hot Chips Symposium
Radhakrishnan Nagarajan, Sudeep Bhoja, Tom Issenhuth
2016 J jnl
J. Biomed. Informatics
Radhakrishnan Nagarajan, Meenakshi Upreti
2016 J jnl
J. Am. Medical Informatics Assoc.
Jessica D. Tenenbaum, Paul Avillach, Marge M. Benham-Hutchins, Matthew K. Breitenstein, Erin L. Crowgey, Mark A. Hoffman, Xia Jiang, Subha Madhavan, John E. Mattison, Radhakrishnan Nagarajan, Bisakha Ray, Dmitriy Shin, Shyam Visweswaran, Zhongming Zhao, Robert R. Freimuth
2015 J jnl
BMC Bioinform.
Sally R. Ellingson, Chi Wang, Radhakrishnan Nagarajan
2014 conf
OFC
Fred Kish, Mike Reffle, Tim Butrie, Mehrdad Ziari, Peter Evans, Scott Corzine, Huan-Shang Tsai, Don Pavinski, Jiaming Zhang, Jie Tang, Andrew Dentai, Ranjani Muthiah, Jacco Pleumeekers, Damien Lambert, Mark Missey, Vikrant Lal, Matt Fisher, Sanjeev Murthy, Randal Salvatore, Scott Demars, Adam James, Jeffrey Rahn, Saurabh Kumar, Matthew Mitchell, Jianping Zhang, Tiangong Liu, Radhakrishnan Nagarajan, Masaki Kato, David Welch
2013 J jnl
J. Biomed. Informatics
Radhakrishnan Nagarajan, Alex T. Kalinka, William R. Hogan
2013 J jnl
Proc. IEEE
Fred Kish, Radhakrishnan Nagarajan, David Welch, Peter Evans, Jon Rossi, Jacco Pleumeekers, Andrew Dentai, Masaki Kato, Scott Corzine, Ranjani Muthiah, Mehrdad Ziari, Richard Schneider, Mike Reffle, Tim Butrie, Damien Lambert, Mark Missey, Vikrant Lal, Matt Fisher, Sanjeev Murthy, Randal Salvatore, Scott Demars, Adam James, Chuck Joyner
2013 J jnl
Artif. Intell. Medicine
Marco Scutari, Radhakrishnan Nagarajan
2012 conf
WOCC
Han Sun, Kuang-Tsan Wu, John McNicol, Matthew Mitchell, Vinayak Dangui, Mike VanLeeuwen, Jeff Rahn, Steve Grubb, Radhakrishnan Nagarajan, Mehrdad Ziari, Scott Corzine, Peter Evans, Masaki Kato, Fred Kish, Dave Welch
2012 J jnl
Artif. Intell. Medicine
Ralph L. Kodell, Chuanlei Zhang, Eric R. Siegel, Radhakrishnan Nagarajan
2010 J jnl
Neuroinformatics
Radhakrishnan Nagarajan, Richard B. Darlington, Barbara L. Finlay, Barbara Clancy
2009 conf
GENSiPS
Nidhal Bouaynaya, Dan Schonfeld, Radhakrishnan Nagarajan
2009 J jnl
BMC Bioinform.
Shweta S. Chavan, Michael A. Bauer, Marco Scutari, Radhakrishnan Nagarajan
2008 J jnl
Bioinform.
Radhakrishnan Nagarajan, Meenakshi Upreti
2008 conf
PRIB
Radhakrishnan Nagarajan, Meenakshi Upreti, Mariofanna G. Milanova
2008 J jnl
Neuroinformatics
Radhakrishnan Nagarajan, Barbara Clancy
2008 ch.
Computational Intelligence in Biomedicine and Bioinformatics
Radhakrishnan Nagarajan
2006 J jnl
IEEE ACM Trans. Comput. Biol. Bioinform.
Radhakrishnan Nagarajan, Meenakshi Upreti
2006 J jnl
Int. J. Bifurc. Chaos
Radhakrishnan Nagarajan, Meenakshi Upreti
2006 J jnl
Complex Syst.
Rajesh G. Kavasseri, Radhakrishnan Nagarajan
2005 J jnl
Int. J. Bifurc. Chaos
Radhakrishnan Nagarajan
2005 J jnl
Int. J. Bifurc. Chaos
Radhakrishnan Nagarajan, Rajesh G. Kavasseri
2005 J jnl
Int. J. Bifurc. Chaos
Radhakrishnan Nagarajan, Jane E. Aubin, Charlotte A. Peterson
2004 J jnl
IEEE Trans. Circuits Syst. I Regul. Pap.
Rajesh G. Kavasseri, Radhakrishnan Nagarajan
2003 J jnl
IEEE Trans. Medical Imaging
Radhakrishnan Nagarajan
2003 J jnl
Int. J. Bifurc. Chaos
Radhakrishnan Nagarajan
2002 J jnl
IEEE Trans. Biomed. Eng.
Radhakrishnan Nagarajan
tests/unit/test_apk_jadx_wrapper.py
← Index tests/unit/test_apk_jadx_wrapper.py python
"""
Unit tests for JADX wrapper subprocess management and output parsing.

All subprocess calls are mocked — no JADX/Java installation required.
"""
import os
import tempfile
import textwrap

import pytest
from unittest.mock import MagicMock, patch, call

pytestmark = [pytest.mark.unit, pytest.mark.apk, pytest.mark.decompile]


class TestJADXDecompiler:
    """Tests for JADXDecompiler subprocess wrapper."""

    @patch.dict(os.environ, {}, clear=False)
    def test_init_defaults(self):
        os.environ.pop("JADX_PATH", None)
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        assert j.jadx_path == "jadx"
        assert j.timeout == 300

    def test_init_custom_path(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler(jadx_path="/usr/local/bin/jadx", timeout=300)
        assert j.jadx_path == "/usr/local/bin/jadx"
        assert j.timeout == 300

    def test_init_from_env(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        with patch.dict(os.environ, {"JADX_PATH": "/opt/jadx/bin/jadx", "JADX_TIMEOUT": "120"}):
            j = JADXDecompiler()
            assert j.jadx_path == "/opt/jadx/bin/jadx"
            assert j.timeout == 120

    @patch("subprocess.Popen")
    def test_decompile_success(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("output", "")
        mock_proc.returncode = 0
        mock_popen.return_value = mock_proc

        j = JADXDecompiler()
        result = j.decompile("/test.apk", "/output")
        assert result is True

    @patch("subprocess.Popen")
    def test_decompile_nonzero_exit_no_sources(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("", "error msg")
        mock_proc.returncode = 1
        mock_popen.return_value = mock_proc

        j = JADXDecompiler(log=MagicMock())
        result = j.decompile("/test.apk", "/nonexistent_output")
        assert result is False

    @patch("subprocess.Popen")
    def test_decompile_timeout(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        import subprocess
        mock_proc = MagicMock()
        mock_proc.communicate.side_effect = subprocess.TimeoutExpired(cmd="jadx", timeout=10)
        mock_proc.pid = 12345
        mock_popen.return_value = mock_proc

        with patch("os.getpgid", return_value=12345), \
             patch("os.killpg"):
            j = JADXDecompiler(timeout=10, log=MagicMock())
            result = j.decompile("/test.apk", "/output")
            assert result is False

    @patch("subprocess.Popen", side_effect=FileNotFoundError)
    def test_decompile_not_found(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler(log=MagicMock())
        result = j.decompile("/test.apk", "/output")
        assert result is False

    @patch("subprocess.Popen")
    def test_decompile_command_args(self, mock_popen):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("", "")
        mock_proc.returncode = 0
        mock_popen.return_value = mock_proc

        j = JADXDecompiler(jadx_path="/opt/jadx")
        j.decompile("/test.apk", "/output")

        cmd = mock_popen.call_args[0][0]
        assert cmd[0] == "/opt/jadx"
        assert "--no-res" in cmd
        assert "--no-imports" in cmd
        assert "--threads-count" in cmd
        assert "/test.apk" in cmd

    def test_parse_java_methods_empty_dir(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        result = j.parse_java_methods("/nonexistent")
        assert result == {}

    def test_parse_java_methods_with_files(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        with tempfile.TemporaryDirectory() as tmpdir:
            sources_dir = os.path.join(tmpdir, "sources", "com", "example")
            os.makedirs(sources_dir)

            java_content = textwrap.dedent("""\
                package com.example;

                public class MyClass {
                    public void doStuff(int x) {
                        System.out.println(x);
                    }

                    private String getName() {
                        return "test";
                    }
                }
            """)
            with open(os.path.join(sources_dir, "MyClass.java"), "w") as f:
                f.write(java_content)

            j = JADXDecompiler()
            methods = j.parse_java_methods(tmpdir)
            assert len(methods) >= 1

    def test_extract_methods_from_java(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        source = textwrap.dedent("""\
            public void foo(int x) {
                if (x > 0) {
                    System.out.println(x);
                }
            }
        """)
        j = JADXDecompiler()
        methods = j._extract_methods_from_java(source, "com.example.Test")
        assert len(methods) == 1
        key = list(methods.keys())[0]
        assert "foo" in key

    def test_is_method_declaration_valid(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        result = j._is_method_declaration("    public void foo(int x) {")
        assert result is not None
        assert result[0] == "foo"

    def test_is_method_declaration_control_flow(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        # 'if', 'for', etc. should not be recognized as methods
        assert j._is_method_declaration("        if (x > 0) {") is None
        assert j._is_method_declaration("        for (int i = 0; i < 10; i++) {") is None

    def test_is_method_declaration_static(self):
        from redb.extractors.decompiler.apk.jadx_wrapper import JADXDecompiler
        j = JADXDecompiler()
        result = j._is_method_declaration("    public static void main(String[] args) {")
        assert result is not None
        assert result[0] == "main"