Radhakrishnan Mahadevan

24 papers C 3Journal 18Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Graph Data Modeling: Molecules, Proteins, & Chemical Processes.
CoRR
José Manuel Barraza-Chavez, Rana Ahmed Barghout, Ricardo Almada-Monter, Adrian Jinich, Radhakrishnan Mahadevan, Benjamín Sánchez-Lengeling
2023 J jnl
Nonlinear programming reformulation of dynamic flux balance analysis models.
Comput. Chem. Eng.
Rafael D. de Oliveira, Galo A. C. Le Roux, Radhakrishnan Mahadevan
2022 J jnl
KinMod database: a tool for investigating metabolic regulation.
Database J. Biol. Databases Curation
Kiandokht Haddadi, Rana Ahmed Barghout, Radhakrishnan Mahadevan
2021 J jnl
A gap-filling algorithm for prediction of metabolic interactions in microbial communities.
PLoS Comput. Biol.
Dafni Giannari, Cleo Hanchen Ho, Radhakrishnan Mahadevan
2021 — conf
Enzyme Activity Prediction of Sequence Variants on Novel Substrates using Improved Substrate Encodings and Convolutional Pooling.
MLBC
Zhiqing Xu, Jinghao Wu, Yun S. Song, Radhakrishnan Mahadevan
2021 J jnl
Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism.
PLoS Comput. Biol.
Leo Zhu, William Pei, Ines Thiele, Radhakrishnan Mahadevan
2021 J jnl
Physiologically-based pharmacokinetic model for predicting blood and tissue tetrahydrocannabinol concentrations.
Comput. Chem. Eng.
Leo Zhu, William Pei, Patricia DiCiano, Bruna Brands, Christine M. Wickens, Bernard Le Foll, Bronsen Kwong, Megha Parashar, Atchu Sivananthan, Radhakrishnan Mahadevan
2020 J jnl
Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks.
BMC Bioinform.
Steffen Klamt, Radhakrishnan Mahadevan, Axel von Kamp
2019 J jnl
A multi-scale model for low-density lipoprotein cholesterol (LDL-C) regulation in the human body: Application to quantitative systems pharmacology.
Comput. Chem. Eng.
Masood Khaksar Toroghi, William R. Cluett, Radhakrishnan Mahadevan
2019 J jnl
A scalable method for parameter identification in kinetic models of metabolism using steady-state data.
Bioinform.
Shyam Srinivasan, William R. Cluett, Radhakrishnan Mahadevan
2019 J jnl
AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution.
Database J. Biol. Databases Curation
Kevin Correia, Shi M. Yu, Radhakrishnan Mahadevan
2018 J jnl
Model-based design of bistable cell factories for metabolic engineering.
Bioinform.
Shyam Srinivasan, William R. Cluett, Radhakrishnan Mahadevan
2017 J jnl
From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.
PLoS Comput. Biol.
Steffen Klamt, Georg Regensburger, Matthias P. Gerstl, Christian Jungreuthmayer, Stefan Schuster, Radhakrishnan Mahadevan, Jürgen Zanghellini, Stefan Müller
2015 J jnl
Genome-scale strain designs based on regulatory minimal cut sets.
Bioinform.
Radhakrishnan Mahadevan, Axel von Kamp, Steffen Klamt
2010 J jnl
Characterizing the Metabolism of
PLoS Comput. Biol.
M. Ahsanul Islam, Elizabeth A. Edwards, Radhakrishnan Mahadevan
2010 C conf
Designing experiments from noisy metabolomics data to refine constraint-based models.
ACC
Laurence Yang, Radhakrishnan Mahadevan, William R. Cluett
2009 J jnl
Genome-scale constraint-based modeling of Geobacter metallireducens.
BMC Syst. Biol.
Jun Sun, Bahareh Sayyar, Jessica E. Butler, Priti Pharkya, Tom Fahland, Iman Famili, Christophe H. Schilling, Derek R. Lovley, Radhakrishnan Mahadevan
2008 J jnl
A bilevel optimization algorithm to identify enzymatic capacity constraints in metabolic networks.
Comput. Chem. Eng.
Laurence Yang, Radhakrishnan Mahadevan, William R. Cluett
2008 J jnl
Computational and Experimental Analysis of Redundancy in the Central Metabolism of
PLoS Comput. Biol.
Daniel Segura, Radhakrishnan Mahadevan, Katy Juarez, Derek R. Lovley
2008 — conf
Genome Regions Involved in Multiple Regulatory Pathways Identified Using GSEL, A Genome-Wide Database of Regulatory Sequence Elements of Geobacter sulfurreducens.
BMEI (1)
Julia Krushkal, Marko Puljic, Bin Yan, Jose F. Barbe, Radhakrishnan Mahadevan, Bradley Postier, Regina A. O'Neil, Gemma Reguera, Ching Leang, Laurie N. DiDonato, Cinthia Núñez, Barbara A. Methé, Ronald M. Adkins, Derek R. Lovley
2006 J jnl
Optimal genetic manipulations in batch bioreactor control.
Autom.
Kapil G. Gadkar, Radhakrishnan Mahadevan, Francis J. Doyle III
2005 C conf
Batch control of genetic alterations for optimal metabolic engineering.
ACC
Kapil G. Gadkar, Radhakrishnan Mahadevan, Francis J. Doyle III
2004 C conf
A partial flatness approach to nonlinear moving horizon estimation.
ACC
Radhakrishnan Mahadevan, Francis J. Doyle
1999 — conf
Nonlinear nonsquare control of a continuous bioreactor using flat outputs.
ECC
Radhakrishnan Mahadevan, Francis J. Doyle