Rachael I. Scahill

15 papers A 1Journal 12Unranked 2
YearRankTypeTitle / Venue / Authors
2021 J jnl
Frontiers Big Data
Peter A. Wijeratne, Eileanoir B. Johnson, Sarah Gregory, Nellie Georgiou-Karistianis, Jane S. Paulsen, Rachael I. Scahill, Sarah J. Tabrizi, Daniel C. Alexander
2014 J jnl
NeuroImage
Daniel Kostro, Ahmed Abdulkadir, Alexandra Durr, Raymund Roos, Blair R. Leavitt, Hans J. Johnson, David M. Cash, Sarah J. Tabrizi, Rachael I. Scahill, Olaf Ronneberger, Stefan Klöppel
2012 J jnl
NeuroImage
Hubert M. J. Fonteijn, Marc Modat, Matthew J. Clarkson, Josephine Barnes, Manja Lehmann, Nicola Z. Hobbs, Rachael I. Scahill, Sarah J. Tabrizi, Sébastien Ourselin, Nick C. Fox, Daniel C. Alexander
2009 J jnl
NeuroImage
Nicola Z. Hobbs, Susie M. D. Henley, Edward J. Wild, Kelvin K. Leung, Chris Frost, Roger A. Barker, Rachael I. Scahill, Josephine Barnes, Sarah J. Tabrizi, Nick C. Fox
2008 J jnl
NeuroImage
Josephine Barnes, J. Foster, Richard G. Boyes, T. Pepple, E. K. Moore, Jonathan M. Schott, Chris Frost, Rachael I. Scahill, Nick C. Fox
2008 J jnl
NeuroImage
Oscar Camara, Julia A. Schnabel, Gerard R. Ridgway, William R. Crum, Abdel Douiri, Rachael I. Scahill, Derek L. G. Hill, Nick C. Fox
2008 J jnl
NeuroImage
Gerard R. Ridgway, Susie M. D. Henley, Jonathan D. Rohrer, Rachael I. Scahill, Jason D. Warren, Nick C. Fox
2007 conf
MICCAI (2)
Oscar Camara, Rachael I. Scahill, Julia A. Schnabel, William R. Crum, Gerard R. Ridgway, Derek L. G. Hill, Nick C. Fox
2007 J jnl
NeuroImage
L. A. van de Pol, Josephine Barnes, Rachael I. Scahill, Chris Frost, Emma B. Lewis, Richard G. Boyes, Ronald A. van Schijndel, Philip Scheltens, Nick C. Fox, Frederik Barkhof
2006 J jnl
IEEE Trans. Medical Imaging
Oscar Camara, Martin Schweiger, Rachael I. Scahill, William R. Crum, Beatrix I. Sneller, Julia A. Schnabel, Gerard R. Ridgway, David M. Cash, Derek L. G. Hill, Nick C. Fox
2006 conf
MICCAI (2)
Oscar Camara-Rey, Martin Schweiger, Rachael I. Scahill, William R. Crum, Julia A. Schnabel, Derek L. G. Hill, Nick C. Fox
2004 J jnl
NeuroImage
Josephine Barnes, Rachael I. Scahill, Richard G. Boyes, Chris Frost, Emma B. Lewis, Charlotte L. Rossor, Martin Rossor, Nick C. Fox
2004 J jnl
NeuroImage
Shona Price, Dominic Paviour, Rachael I. Scahill, John Stevens, Martin Rossor, Andrew Lees, Nick C. Fox
2002 J jnl
NeuroImage
Catriona D. Good, Rachael I. Scahill, Nick C. Fox, John Ashburner, Karl J. Friston, Dennis Chan, William R. Crum, Martin Rossor, Richard S. J. Frackowiak
2001 A conf
MICCAI
Rachael I. Scahill, William R. Crum, Nick C. Fox
redb/utils/sort_files_by_type.py
← Index redb/utils/sort_files_by_type.py python
import os
import sys
from collections import defaultdict
import tempfile
from magika import Magika
import py7zr
import pyzipper
import shutil

"""
This script is used to sort files by their type. 
It reads all the files in the provided directory and splits them into different 
directories based on their type. Mainly, it classifies the files into the following types:
- PE Binaries
- Mach-O Binaries
- ELF Binaries
- APK 
- Other Files

It outputs the count of files for each file extension and file type.

Command line example:
nohup python3 sort_files_by_type.py /mnt/samples/consilience/malware/vx-bazaar-expanded/Bazaar.2020.12 \
    /mnt/samples/consilience/malware/_sorted_samples/vx-bazaar/2020/ > \
    /mnt/samples/consilience/malware/ops-logs/20241014-SORT_FILES-bazaar_2020.12.output.log 2>&1 &
"""


def process_zip_file(filepath):
    print(f"[INFO] - Processing zip file: {filepath}")
    with tempfile.TemporaryDirectory() as temp_dir:
        try:
            with pyzipper.AESZipFile(filepath) as zf:
                zf.pwd = b"infected"
                filename = zf.namelist()[0]
                zf.extractall(temp_dir)
                extracted_zip_path = os.path.join(temp_dir, filename)
                return process_binary_file(extracted_zip_path)
        except Exception as e:
            print(f"[ERR] - Error processing zip file {filepath}: {str(e)}")
            return None


def process_7z_file(filepath):
    print(f"[INFO] - Processing 7z file: {filepath}")
    with tempfile.TemporaryDirectory() as temp_dir:
        try:
            with py7zr.SevenZipFile(filepath, mode="r", password="infected") as z:
                z.extractall(path=temp_dir)
                for root, _, files in os.walk(temp_dir):
                    for file in files:
                        extracted_file_path = os.path.join(root, file)
                        return process_binary_file(extracted_file_path)
        except Exception as e:
            print(f"[ERR] - Error processing 7z file {filepath}: {str(e)}")
            return None


def process_binary_file(filepath):
    print(f"[INFO] - Processing binary file: {filepath}")
    try:
        with open(filepath, "rb") as f:
            data = f.read(512 * 1024)  # 512KB
        return Magika().identify_bytes(data).output.ct_label
    except Exception as e:
        print(f"[ERR] - Error processing binary file {filepath}: {str(e)}")
        return "ERROR"


def count_file_extensions(path, dest_dir):
    # A defaultdict to store file extension counts
    extension_count = defaultdict(int)
    filetype_count = defaultdict(int)
    tot_files = 0

    # Walk through the directory
    for root, dirs, files in os.walk(path):
        for file in files:
            if file.startswith("."):
                continue

            tot_files += 1
            # Split the file extension from the file name
            _, ext = os.path.splitext(file)
            ext = ext.lower()

            # Count the extensions
            extension_count[ext] += 1
            filepath = os.path.join(root, file)
            filetype = ""

            if ext == ".7z":
                filetype = process_7z_file(filepath)
            elif ext == ".zip":
                filetype = process_zip_file(filepath)
            else:
                filetype = process_binary_file(filepath)

            filetype_count[filetype] += 1

            if filetype == "pebin":
                dest = os.path.join(dest_dir, "pebin")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            elif filetype == "macho":
                dest = os.path.join(dest_dir, "macho")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            elif filetype == "elf":
                dest = os.path.join(dest_dir, "elf")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            elif filetype == "apk":
                dest = os.path.join(dest_dir, "apk")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            else:
                dest = os.path.join(dest_dir, "other")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            print(f"[STATUS] - Progres: {tot_files}/{len(files)} files processed")

    # Print the results
    # print("- File Extension Statistics:")
    # for ext, count in extension_count.items():
    #     if ext:  # To exclude files with no extension
    #         print(f"\t{ext}: {count} files")

    # if "" in extension_count:
    #     print(f'\t{extension_count[""]} files with no extension')

    print(f"- Total Number of Files: {tot_files}")
    print("\n- File Type Statistics:")
    for filetype, count in sorted(filetype_count.items()):
        print(f"\t{filetype:<15}{count:>8}")


if __name__ == "__main__":
    # Check if the path was passed as a command-line argument
    if len(sys.argv) != 3:
        print("Usage: python3 script.py <input_path> <dest_dir>")
        sys.exit(1)

    # Get the path from the command-line arguments
    input_path = sys.argv[1]
    dest_dir = sys.argv[2]

    # Check if the provided path is valid
    if not os.path.isdir(input_path):
        print(f"The path '{input_path}' is not a valid directory.")
        sys.exit(1)

    # Call the function to count file extensions
    count_file_extensions(input_path, dest_dir)