R. Russell Rhinehart

27 papers C 19Journal 8
YearRankTypeTitle / Venue / Authors
2025 C conf
ACC
Luis José Yebra, R. Russell Rhinehart
2024 C conf
ACC
R. Russell Rhinehart
2022 C conf
ACC
R. Russell Rhinehart
2022 C conf
ACC
Tariq Samad, Daniel Y. Abramovitch, Michael Lees, Iven Mareels, R. Russell Rhinehart, Francesco Cuzzola, Benny Grosman, Oleg Gusikhin, Esko Juuso, Bhagyesh V. Patil, Stefan Pickl
2020 J jnl
Annu. Rev. Control.
Tariq Samad, Margret Bauer, Scott A. Bortoff, Stefano Di Cairano, Lorenzo Fagiano, Peter Fogh Odgaard, R. Russell Rhinehart, Ricardo S. Sánchez Peña, Atanas Serbezov, Finn Ankersen, Philippe Goupil, Benyamin Grosman, Marcel Heertjes, Iven Mareels, Raye Abdoulie Sosseh
2020 J jnl
Comput. Chem. Eng.
Stephen M. Mayo, R. Russell Rhinehart, Sundar V. Madihally
2015 C conf
ACC
Suresh K. Jayaraman, R. Russell Rhinehart
2014 J jnl
Comput. Chem. Eng.
R. Russell Rhinehart
2014 J jnl
Comput. Chem. Eng.
Upasana Manimegalai-Sridhar, Anand Govindarajan, R. Russell Rhinehart
2013 C conf
ACC
R. Russell Rhinehart
2013 C conf
ACC
Ting Huang, R. Russell Rhinehart
2012 C conf
ACC
Haoxian Chen, R. Russell Rhinehart
2012 J jnl
Comput. Chem. Eng.
R. Russell Rhinehart, Ming Su, Upasana Manimegalai-Sridhar
2010 J jnl
Comput. Chem. Eng.
Ming Su, R. Russell Rhinehart
2009 C conf
ACC
Ming Su, R. Russell Rhinehart
2009 C conf
ACC
Ming Su, R. Russell Rhinehart
2009 J jnl
J. Circuits Syst. Comput.
Ming Su, Gary G. Yen, R. Russell Rhinehart
2009 C conf
ACC
Ming Su, R. Russell Rhinehart
2005 C conf
ACC
Venkatram Padmanabhan, R. Russell Rhinehart
2005 C conf
ACC
Samuel O. Owusu, Qing Li, R. Russell Rhinehart
2004 C conf
ACC
Samuel O. Owusu, R. Russell Rhinehart
2004 C conf
ACC
Nitin Sharma, R. Russell Rhinehart
2004 C conf
ACC
S. Samir Alam, R. Russell Rhinehart, Karen A. High, Paul J. Gemperline
2004 C conf
ACC
Zhiqiang Gao, R. Russell Rhinehart
2002 C conf
ACC
Sandeep Chandran, R. Russell Rhinehart
2000 C conf
ACC
Mahesh S. Iyer, R. Russell Rhinehart
1999 J jnl
IEEE Trans. Neural Networks
Mahesh S. Iyer, R. Russell Rhinehart
notebooks/redb-clickhouse-TEST.ipynb
← Index notebooks/redb-clickhouse-TEST.ipynb plaintext
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{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Definitions"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [],
   "source": [
    "import clickhouse_connect"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "\n",
    "ch_TEST_client = clickhouse_connect.get_client(host='e.rationaledge.io', port=443, username='default', password='werioubTGwvf0-dsbv_', database='redb', verify=False)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [],
   "source": [
    "ch_TEST_BETA_client = clickhouse_connect.get_client(host='k.rationaledge.io', port=443, username='default', password='werioubTGwvf0-dsbv_', database='default', verify=False)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "<bound method HttpClient.close_connections of <clickhouse_connect.driver.httpclient.HttpClient object at 0x105fd64d0>>"
      ]
     },
     "execution_count": 13,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "ch_TEST_BETA_client.close_connections"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "<clickhouse_connect.driver.summary.QuerySummary at 0x11f900810>"
      ]
     },
     "execution_count": 9,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "ch_TEST_BETA_client.command(\"\"\"\n",
    "RENAME DATABASE redb TO orig_redb;\n",
    "\"\"\")"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## DB Creation (schema 2025-08-02)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "ch_TEST_client.command(\"\"\"\n",
    "CREATE DATABASE IF NOT EXISTS redb;\n",
    "\"\"\")"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Define General Tables"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "### CREATE FULL REDB DATABASE\n",
    "def create_redb_with_all_tables(client):\n",
    "    client.command(\"\"\"\n",
    "        CREATE DATABASE IF NOT EXISTS redb\n",
    "    \"\"\")\n",
    "    create_all_general_tables(client)\n",
    "    create_all_pe_tables(client)\n",
    "\n",
    "#### CREATE FULL TABLES\n",
    "def create_all_general_tables(client):\n",
    "    create_basic_properties_dbtable(client)\n",
    "    create_hashes_dbtable(client)\n",
    "    create_capa_dbtable(client)\n",
    "    create_die_dbtable(client)\n",
    "    create_extra_findings_dbtable(client)\n",
    "\n",
    "\n",
    "##################################\n",
    "#### CREATE INDIVIDUAL TABLES ####\n",
    "##################################\n",
    "\n",
    "#### GENERAL TABLES ####\n",
    "# All tables have SETTINGS index_granularity = 8192\n",
    "def create_basic_properties_dbtable(client):\n",
    "    # Create samples_metadata table\n",
    "    client.command(\"\"\"\n",
    "        CREATE TABLE IF NOT EXISTS redb_basic_properties (\n",
    "            sha256 FixedString(64), -- primary key\n",
    "            md5 FixedString(32),\n",
    "            sha1 FixedString(40),\n",
    "            filename Nullable(String),\n",
    "            sample_name String,\n",
    "            filesize UInt64,\n",
    "            file_entropy Float64,\n",
    "            filetype LowCardinality(String),\n",
    "            filetype_mime LowCardinality(String),\n",
    "            filetype_magika LowCardinality(String),\n",
    "            analysis_date DateTime64(3, 'UTC'),\n",
    "        ) ENGINE = ReplacingMergeTree(analysis_date)\n",
    "        PRIMARY KEY (sha256)\n",
    "        ORDER BY (sha256)\n",
    "    \"\"\")\n",
    "\n",
    "def create_hashes_dbtable(client):\n",
    "    # Create hashes table\n",
    "    client.command(\"\"\"\n",
    "        CREATE TABLE IF NOT EXISTS redb_hashes (\n",
    "            sha256 FixedString(64), -- primary key\n",
    "            md5 FixedString(32),\n",
    "            sha1 FixedString(40),\n",
    "            ssdeep_hash Nullable(String),\n",
    "            tlsh_hash Nullable(String),\n",
    "            authentihash Nullable(String),\n",
    "            imphash Nullable(String),\n",
    "            impfuzzy Nullable(String),\n",
    "            typerefhash Nullable(String),\n",
    "            richhash Nullable(String),\n",
    "            richpe_hash Nullable(String),\n",
    "            richpv_hash Nullable(String),\n",
    "            richpv_hash_sorted Nullable(String),\n",
    "            dhash Nullable(String),\n",
    "            analysis_date DateTime64(3, 'UTC')\n",
    "        ) ENGINE = ReplacingMergeTree(analysis_date)\n",
    "        PRIMARY KEY (sha256)\n",
    "        ORDER BY (sha256)\n",
    "    \"\"\")\n",
    "\n",
    "def create_capa_dbtable(client):\n",
    "    # Create sample_capabilities table\n",
    "    client.command(\"\"\"\n",
    "        SET enable_json_type = 1;\n",
    "    \"\"\")\n",
    "    client.command(\"\"\"\n",
    "        -- Base table for CAPA analysis results\n",
    "        CREATE TABLE IF NOT EXISTS redb_capa (\n",
    "            sha256 FixedString(64),\n",
    "            md5 FixedString(32),\n",
    "            sha1 FixedString(40),\n",
    "            analysis_date DateTime64(3, 'UTC'),\n",
    "            -- Store full JSON dumps as strings for flexibility\n",
    "            capa_dump JSON CODEC(ZSTD(3)),\n",
    "            attack_dump JSON CODEC(ZSTD(3)),\n",
    "            mbc_dump JSON CODEC(ZSTD(3))\n",
    "        ) ENGINE = ReplacingMergeTree(analysis_date)\n",
    "        ORDER BY sha256;\n",
    "    \"\"\")\n",
    "\n",
    "    client.command(\"\"\"\n",
    "        -- Normalized table for capabilities and namespaces\n",
    "        CREATE TABLE IF NOT EXISTS redb_capa_capabilities (\n",
    "            sha256 FixedString(64),\n",
    "            md5 FixedString(32),\n",
    "            sha1 FixedString(40),\n",
    "            analysis_date DateTime64(3, 'UTC'),\n",
    "            namespace LowCardinality(String),\n",
    "            capability LowCardinality(String)\n",
    "        ) ENGINE = ReplacingMergeTree(analysis_date)\n",
    "        ORDER BY (sha256, namespace, capability);\n",
    "    \"\"\")\n",
    "\n",
    "    client.command(\"\"\"\n",
    "        -- Materialized view for capability statistics\n",
    "        CREATE MATERIALIZED VIEW IF NOT EXISTS redb_capa_capabilities_stats (\n",
    "            namespace LowCardinality(String),\n",
    "            capability LowCardinality(String),\n",
    "            samples_bitmap AggregateFunction(groupBitmap, UInt64),\n",
    "            occurrence_count UInt64\n",
    "        ) ENGINE = AggregatingMergeTree()\n",
    "        ORDER BY (namespace, capability)\n",
    "        AS SELECT\n",
    "            namespace,\n",
    "            capability,\n",
    "            groupBitmapState(cityHash64(sha256)) as samples_bitmap,\n",
    "            count() as occurrence_count\n",
    "        FROM redb_capa_capabilities\n",
    "        GROUP BY namespace, capability;\n",
    "    \"\"\")\n",
    "\n",
    "    client.command(\"\"\"\n",
    "        -- Normalized table for MITRE ATT&CK mappings\n",
    "        CREATE TABLE IF NOT EXISTS redb_capa_attack (\n",
    "            sha256 FixedString(64),\n",
    "            md5 FixedString(32),\n",
    "            sha1 FixedString(40),\n",
    "            analysis_date DateTime64(3, 'UTC'),\n",
    "            tactic LowCardinality(String),\n",
    "            technique LowCardinality(String),\n",
    "            technique_id LowCardinality(String)\n",
    "        ) ENGINE = ReplacingMergeTree(analysis_date)\n",
    "        ORDER BY (sha256, tactic, technique_id);\n",
    "    \"\"\")\n",
    "\n",
    "    client.command(\"\"\"\n",
    "        -- Materialized view for ATT&CK statistics\n",
    "        CREATE MATERIALIZED VIEW IF NOT EXISTS redb_capa_attack_stats (\n",
    "            tactic LowCardinality(String),\n",
    "            technique LowCardinality(String),\n",
    "            technique_id LowCardinality(String),\n",
    "            samples_bitmap AggregateFunction(groupBitmap, UInt64),\n",
    "            occurrence_count UInt64\n",
    "        ) ENGINE = AggregatingMergeTree()\n",
    "        ORDER BY (tactic, technique_id)\n",
    "        AS SELECT\n",
    "            tactic,\n",
    "            technique,\n",
    "            technique_id,\n",
    "            groupBitmapState(cityHash64(sha256)) as samples_bitmap,\n",
    "            count() as occurrence_count\n",
    "        FROM redb_capa_attack\n",
    "        GROUP BY tactic, technique, technique_id;\n",
    "    \"\"\")\n",
    "\n",
    "    client.command(\"\"\"\n",
    "        -- Normalized table for MBC mappings\n",
    "        CREATE TABLE IF NOT EXISTS redb_capa_mbc (\n",
    "            sha256 FixedString(64),\n",
    "            md5 FixedString(32),\n",
    "            sha1 FixedString(40),\n",
    "            analysis_date DateTime64(3, 'UTC'),\n",
    "            objective LowCardinality(String),\n",
    "            behavior LowCardinality(String),\n",
    "            behavior_id LowCardinality(String)\n",
    "        ) ENGINE = ReplacingMergeTree(analysis_date)\n",
    "        ORDER BY (sha256, objective, behavior_id);\n",
    "    \"\"\")\n",
    "\n",
    "    client.command(\"\"\"\n",
    "        -- Materialized view for MBC statistics\n",
    "        CREATE MATERIALIZED VIEW IF NOT EXISTS redb_capa_mbc_stats (\n",
    "            objective LowCardinality(String),\n",
    "            behavior LowCardinality(String),\n",
    "            behavior_id LowCardinality(String),\n",
    "            samples_bitmap AggregateFunction(groupBitmap, UInt64),\n",
    "            occurrence_count UInt64\n",
    "        ) ENGINE = AggregatingMergeTree()\n",
    "        ORDER BY (objective, behavior_id)\n",
    "        AS SELECT\n",
    "            objective,\n",
    "            behavior,\n",
    "            behavior_id,\n",
    "            groupBitmapState(cityHash64(sha256)) as samples_bitmap,\n",
    "            count() as occurrence_count\n",
    "        FROM redb_capa_mbc\n",
    "        GROUP BY objective, behavior, behavior_id;\n",
    "    \"\"\")\n",
    "\n",
    "def create_die_dbtable(client):\n",
    "    # Create sample_die table\n",
    "    client.command(\"\"\"\n",
    "        SET enable_json_type = 1;\n",
    "    \"\"\")\n",
    "    client.command(\"\"\"\n",
    "        CREATE TABLE IF NOT EXISTS redb_die (\n",
    "            sha256 FixedString(64),\n",
    "            md5 FixedString(32),\n",
    "            sha1 FixedString(40),\n",
    "            die_info JSON CODEC(ZSTD(3)),\n",
    "            analysis_date DateTime64(3, 'UTC')\n",
    "        ) ENGINE = ReplacingMergeTree(analysis_date)\n",
    "        PRIMARY KEY (sha256)\n",
    "        ORDER BY (sha256)\n",
    "    \"\"\")\n",
    "\n",
    "    client.command(\"\"\"\n",
    "        CREATE MATERIALIZED VIEW redb_die_mv\n",
    "        (\n",
    "            sha256 FixedString(64),\n",
    "            md5 FixedString(32),\n",
    "            sha1 FixedString(40),\n",
    "            analysis_date DateTime64(3, 'UTC'),\n",
    "            compiler LowCardinality(Nullable(String)),\n",
    "            compiler_full Nullable(String),\n",
    "            format LowCardinality(Nullable(String)),\n",
    "            format_full Nullable(String),\n",
    "            installer LowCardinality(Nullable(String)),\n",
    "            installer_full Nullable(String),\n",
    "            joiner LowCardinality(Nullable(String)),\n",
    "            joiner_full Nullable(String),\n",
    "            language LowCardinality(Nullable(String)),\n",
    "            language_full Nullable(String),\n",
    "            library LowCardinality(Nullable(String)),\n",
    "            library_full Nullable(String),\n",
    "            linker LowCardinality(Nullable(String)),\n",
    "            linker_full Nullable(String),\n",
    "            operation_system LowCardinality(Nullable(String)),\n",
    "            operation_system_full Nullable(String),\n",
    "            packer LowCardinality(Nullable(String)),\n",
    "            packer_full Nullable(String),\n",
    "            protector LowCardinality(Nullable(String)),\n",
    "            protector_full Nullable(String),\n",
    "            sfx LowCardinality(Nullable(String)),\n",
    "            sfx_full Nullable(String),\n",
    "            sign_tool LowCardinality(Nullable(String)),\n",
    "            sign_tool_full Nullable(String),\n",
    "            stub LowCardinality(Nullable(String)),\n",
    "            stub_full Nullable(String),\n",
    "            tool LowCardinality(Nullable(String)),\n",
    "            tool_full Nullable(String),   \n",
    "            -- overlay JSON CODEC(ZSTD(3)),\n",
    "            -- resource JSON CODEC(ZSTD(3)),\n",
    "            has_overlay UInt8,\n",
    "            has_resources UInt8,\n",
    "            is_packed UInt8\n",
    "        )\n",
    "        ENGINE = ReplacingMergeTree(analysis_date)\n",
    "        ORDER BY (sha256)\n",
    "        POPULATE\n",
    "        AS SELECT\n",
    "            sha256,\n",
    "            md5,\n",
    "            sha1,\n",
    "            analysis_date,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'compiler'), '') AS compiler,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'compiler(full)'), '') AS compiler_full,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'format'), '') AS format,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'format(full)'), '') AS format_full,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'installer'), '') AS installer,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'installer(full)'), '') AS installer_full,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'joiner'), '') AS joiner,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'joiner(full)'), '') AS joiner_full,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'language'), '') AS language,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'language(full)'), '') AS language_full,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'library'), '') AS library,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'library(full)'), '') AS library_full,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'linker'), '') AS linker,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'linker(full)'), '') AS linker_full,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'operation_system'), '') AS operation_system,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'operation_system(full)'), '') AS operation_system_full,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'packer'), '') AS packer,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'packer(full)'), '') AS packer_full,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'protector'), '') AS protector,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'protector(full)'), '') AS protector_full,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'sfx'), '') AS sfx,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'sfx(full)'), '') AS sfx_full,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'sign_tool'), '') AS sign_tool,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'sign_tool(full)'), '') AS sign_tool_full,\n",
    "            nullIf(JSONExtractString(toString(die_info), 'stub'), '') AS stub,\n",
    "            nullIf(JSONExtractString(toString(die_info),