Quan Zou - RankMe

334 papers B 1C 8Misc 2Journal 290Unranked 32

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A deep adversarial network model for multi-task analysis of single-cell omics data. Briefings Bioinform. Junlin Xu, Cheng Guo, Yajie Meng, Shuting Jin, Changcheng Lu, Zilong Zhang, Feifei Cui, Xiangzheng Fu, Quan Zou, Tian Tian, Xiangxiang Zeng
2026	J	`jnl`	AutoGERN: single-cell RNA-seq gene regulatory network inference via explicit link modeling and adaptive architectures. Bioinform. Jiacheng Wang, Yaojia Chen, Quan Zou, Ximei Luo
2026	J	`jnl`	CFGSCDSA: Predicting circRNA-drug sensitivity associations based on collaborative feature learning and graph structure learning. PLoS Comput. Biol. Xue Zhang, Quan Zou, Chunyu Wang, Mengting Niu
2026	J	`jnl`	CNNCaps-DBP: Leveraging protein language models with attention-augmented convolution for DNA-binding protein prediction. Neural Networks Ziyuan Yan, Aoyun Geng, Yazi Li, Jiajing Wang, Junlin Xu, Yajie Meng, Leyi Wei, Quan Zou, Zilong Zhang, Feifei Cui
2026	J	`jnl`	Contrastive learning in both structure and function spaces improve drug-target interaction prediction. BMC Bioinform. Yongqing Zhang, Le Chen, Hong Luo, Tianhao Li, Shuwen Xiong, Zixuan Wang, Quan Zou, Wenqian Zhang
2026	J	`jnl`	DeepNhKcr: Explainable Deep Learning Framework for the Prediction of Crotonylation Sites of Non-Histone Lysine in Plants Based on Pre-Trained Protein Language Model. IEEE Trans. Comput. Biol. Bioinform. Jinwei Wang, Zhenjie Luo, Aoyun Geng, Junlin Xu, Yajie Meng, Shankai Yan, Leyi Wei, Zilong Zhang, Qingchen Zhang, Quan Zou, Feifei Cui
2026	J	`jnl`	DeepR2OM: Accurate Recognition for RNA 2′-O-Methylation Sites in Human Genome Using Deep Learning. IEEE Trans. Comput. Biol. Bioinform. Jiahao Yuan, Shun Gao, Ziyuan Yan, Feifei Cui, Leyi Wei, Qingchen Zhang, Quan Zou, Zilong Zhang
2026	J	`jnl`	Distribution and expression aware retrospective learning for single-cell long-tailed class-incremental annotation. Appl. Soft Comput. Tianhao Li, Zixuan Wang, Chenpeng Wu, Zhengxiao Huang, Yixin Xiang, Yuhang Liu, Quan Zou, Naifeng Wen, Yongqing Zhang
2026	J	`jnl`	Enhancing anticancer peptide discovery: A fusion-centric framework with conditional diffusion for prediction and generation. PLoS Comput. Biol. Binyu Li, Xin Zhang, Zhihua Huang, Prayag Tiwari, Quan Zou, Yijie Ding, Xiaoyi Guo
2026	J	`jnl`	Explainable multiscale representation learning for anticancer peptide prediction. Eng. Appl. Artif. Intell. Yongqing Zhang, Xinyu Mao, Yuhang Liu, Wang Li, Zhigan Zhou, Yugui Xu, Jin Wu, Quan Zou, Lei Xu
2026	J	`jnl`	Protein Solubility Prediction Using Fused Graph Convolutional Networks and Improved Attention Networks with AlphaFold3-Derived Features. J. Chem. Inf. Model. Guanjie Song, Zhenjie Luo, Aoyun Geng, Junlin Xu, Yajie Meng, Feifei Cui, Leyi Wei, Quan Zou, Zilong Zhang
2026	J	`jnl`	SMCC: A Novel Clustering Method for Single- and Multi-Omics Data Based on Co-Regularized Network Fusion. IEEE Trans. Comput. Biol. Bioinform. Sha Tian, Ying Yang, Yushan Qiu, Quan Zou
2026	J	`jnl`	Structure-Aware Heterogeneous Information Fusion Framework for Protein-Ligand Binding Affinity Prediction. J. Chem. Inf. Model. Yan Zhu, Chunyu Wang, Junjie Wang, Lingling Zhao, Quan Zou
2025	J	`jnl`	A Multi-Omics Data Integration Framework for Gene Regulatory Network Inference Based on Contrastive Learning. IEEE Trans. Comput. Biol. Bioinform. Yongqing Zhang, Zhigan Zhou, Maocheng Wang, Xinyu Mao, Zixuan Wang, Quan Zou
2025	J	`jnl`	A survey on multi-view fusion for predicting links in biomedical bipartite networks: Methods and applications. Inf. Fusion Yuqing Qian, Yizheng Wang, Junkai Liu, Quan Zou, Yijie Ding, Xiaoyi Guo, Weiping Ding
2025	J	`jnl`	ACP-CLB: An Anticancer Peptide Prediction Model Based on Multichannel Discriminative Processing and Integration of Large Pretrained Protein Language Models. J. Chem. Inf. Model. Aoyun Geng, Zhenjie Luo, Aohan Li, Zilong Zhang, Quan Zou, Leyi Wei, Feifei Cui
2025	J	`jnl`	ACP-ESM2: Enhancing Anticancer Peptide Prediction With Pre-Trained Protein Language Models. IEEE Trans. Comput. Biol. Bioinform. Shun Gao, Yan Xia, Xingfeng Li, Feifei Cui, Qingchen Zhang, Quan Zou, Zilong Zhang
2025	J	`jnl`	AEGNN-M:A 3D Graph-Spatial Co-Representation Model for Molecular Property Prediction. IEEE J. Biomed. Health Informatics Lijun Cai, Yuling He, Xiangzheng Fu, Linlin Zhuo, Quan Zou, Xiaojun Yao
2025	J	`jnl`	APDCA: An accurate and effective method for predicting associations between RBPs and AS-events during epithelial-mesenchymal transition. PLoS Comput. Biol. Yangsong He, Zheng-Jian Bai, Wai-Ki Ching, Quan Zou, Yushan Qiu
2025	J	`jnl`	AVP-HNCL: Innovative Contrastive Learning with a Queue-Based Negative Sampling Strategy for Dual-Phase Antiviral Peptide Prediction. J. Chem. Inf. Model. Yuanhao Li, Aoyun Geng, Zheyu Zhou, Feifei Cui, Junlin Xu, Yajie Meng, Leyi Wei, Quan Zou, Qingchen Zhang, Zilong Zhang
2025	J	`jnl`	Accelerating Prediction of Antiviral Peptides Using Genetic Algorithm-Based Weighted Multiperspective Descriptors with Self-Normalized Deep Networks. J. Chem. Inf. Model. Shahid Akbar, Ali Raza, Quan Zou, Wajdi Alghamdi, Xiaorui Kang, Hashim Ali, Ximei Luo
2025	J	`jnl`	AcidProNet: Acidophilic Protein Classification via DCGAN-GP-Based Data Augmentation and Parameter-Shared Mixture-of-Experts Transformer. J. Chem. Inf. Model. Jiaxing Song, Aoyun Geng, Qianmao Wen, Junlin Xu, Yajie Meng, Feifei Cui, Quan Zou, Leyi Wei, Zilong Zhang
2025	J	`jnl`	An overview of computational methods in single-cell transcriptomic cell type annotation. Briefings Bioinform. Tianhao Li, Zixuan Wang, Yuhang Liu, Sihan He, Quan Zou, Yongqing Zhang
2025	J	`jnl`	AttenRNA: multi-scale deep attentive model with RNA feature variability analysis. Briefings Bioinform. Jing Li, Quan Zou, Chao Zhan
2025	J	`jnl`	Beyond ST-246: Unveiling Potential Inhibitors Targeting VP37 Protein in Silico From Herb and Marine Databases. J. Comput. Chem. Runhua Zhang, Xin Zhang, Shulin Zhao, Quan Zou, Yijie Ding, Xiaoyi Guo, Hongjie Wu
2025	J	`jnl`	Clustering Categorical Data via Multiple Hypothesis Testing. ACM Trans. Knowl. Discov. Data Lianyu Hu, Mudi Jiang, Yan Liu, Quan Zou, Zengyou He
2025	J	`jnl`	Computational approaches for circRNA-disease association prediction: a review. Frontiers Comput. Sci. Mengting Niu, Yaojia Chen, Chunyu Wang, Quan Zou, Lei Xu
2025	J	`jnl`	Computational toxicology in drug discovery: applications of artificial intelligence in ADMET and toxicity prediction. Briefings Bioinform. Jiangyan Zhang, Haolin Li, Yuncong Zhang, Junyang Huang, Liping Ren, Chuantao Zhang, Quan Zou, Yang Zhang
2025	J	`jnl`	DSANIB: Drug-Target Interaction Predictions With Dual-View Synergistic Attention Network and Information Bottleneck Strategy. IEEE J. Biomed. Health Informatics Zhen Tian, Zhuangzhuang Zhang, Wanning Zhou, Zhixia Teng, Wei Song, Quan Zou
2025	J	`jnl`	Decoupled contrastive multi-view clustering with adaptive false negative elimination for cancer subtyping. PLoS Comput. Biol. Mengxiang Lin, Rongqi Fan, Saisai Zhu, Xiaoqiang Yan, Quan Zou, Zhen Tian
2025	J	`jnl`	DeepMaT: Prediction of Target Peptide Classification and Cleavage Site by Combining Mamba2 and Multiple Attention Mechanisms. J. Chem. Inf. Model. Qianmao Wen, Aoyun Geng, Junlin Xu, Yajie Meng, Leyi Wei, Zilong Zhang, Quan Zou, Feifei Cui
2025	J	`jnl`	Differentiable graph clustering with structural grouping for single-cell RNA-seq data. Bioinform. Xiaoqiang Yan, Shike Du, Quan Zou, Zhen Tian
2025	J	`jnl`	ET-PROTACs: modeling ternary complex interactions using cross-modal learning and ternary attention for accurate PROTAC-induced degradation prediction. Briefings Bioinform. Lijun Cai, Guanyu Yue, Yifan Chen, Li Wang, Xiaojun Yao, Quan Zou, Xiangzheng Fu, Dong-Sheng Cao
2025	J	`jnl`	Enhancing and accelerating cell type deconvolution of large-scale spatial transcriptomics slices with dual network model. Bioinform. Yuhong Zha, Shaoqing Feng, Peng Gao, Quan Zou, Xiaoke Ma
2025	J	`jnl`	FORAlign: accelerating gap-affine DNA pairwise sequence alignment using FOR-blocks based on Four Russians approach with linear space complexity. Briefings Bioinform. Yanming Wei, Tong Zhou, Yixiao Zhai, Liang Yu, Quan Zou
2025	J	`jnl`	GCNLA: Inferring Cell-Cell Interactions From Spatial Transcriptomics With Long Short-Term Memory and Graph Convolutional Networks. IEEE J. Biomed. Health Informatics Chao Yang, Xiuhao Fu, Zhenjie Luo, Leyi Wei, Jingbing Li, Feifei Cui, Quan Zou, Qingchen Zhang, Zilong Zhang
2025	J	`jnl`	GRACE: Unveiling Gene Regulatory Networks With Causal Mechanistic Graph Neural Networks in Single-Cell RNA-Sequencing Data. IEEE Trans. Neural Networks Learn. Syst. Jiacheng Wang, Yaojia Chen, Quan Zou
2025	J	`jnl`	GSTRPCA: irregular tensor singular value decomposition for single-cell multi-omics data clustering. Briefings Bioinform. Lu-Bin Cui, Guiliang Guo, Michael K. Ng, Quan Zou, Yushan Qiu
2025	J	`jnl`	Guest Editorial: Large Language Models With Applications in Bioinformatics and Biomedicine. IEEE J. Biomed. Health Informatics Quan Zou, Limin Jiang, Leyi Wei
2025	J	`jnl`	HodgeRankWeight: An Integration Algorithm for Feature Ranking Based on Weight Quantization. IEEE Trans. Comput. Biol. Bioinform. Chaolu Meng, Yunyun Shi, Quan Zou, Ruijun Liu
2025	J	`jnl`	Identifying the DNA methylation preference of transcription factors using ProtBERT and SVM. PLoS Comput. Biol. Yanchao Li, Quan Zou, Qi Dai, Antony Stalin, Ximei Luo
2025	J	`jnl`	Improving protein-protein interaction modulator predictions via knowledge-fused language models. Inf. Fusion Zitong Zhang, Quan Zou, Chunyu Wang, Junjie Wang, Lingling Zhao
2025	J	`jnl`	Kernelized Fuzzy System for Predicting Therapeutic Peptides via Deep Stacked Encoder. IEEE Trans. Comput. Biol. Bioinform. Xiaoyi Guo, Yijie Ding, Quan Zou
2025	J	`jnl`	Multi-Modal Deep Representation Learning Accurately Identifies and Interprets Drug-Target Interactions. IEEE J. Biomed. Health Informatics Jiayue Hu, Yuhang Liu, Xiangxiang Zeng, Quan Zou, Ran Su, Leyi Wei
2025	J	`jnl`	Multiview Deep Learning-Based Molecule Design and Structural Optimization Accelerates Inhibitor Discover. IEEE Trans. Neural Networks Learn. Syst. Chao Pang, Yu Wang, Yi Jiang, Ruheng Wang, Xiaojun Yao, Quan Zou, Xiangxiang Zeng, Ran Su, Leyi Wei
2025	J	`jnl`	PLM-IL4: Enhancing IL-4-inducing peptide prediction with protein language model. Comput. Biol. Chem. Ruiqi Liu, Shankai Yan, Zilong Zhang, Junlin Xu, Yajie Meng, Qingchen Zhang, Leyi Wei, Quan Zou, Feifei Cui
2025	J	`jnl`	PLNMFG: Pseudo-label guided non-negative matrix factorization model with graph constraint for single-cell multi-omics data clustering. PLoS Comput. Biol. Hui Yuan, Mingzhu Liu, Yushan Qiu, Wai-Ki Ching, Quan Zou
2025	J	`jnl`	Predicting circRNA-disease associations with shared units and multi-channel attention mechanisms. Bioinform. Xue Zhang, Quan Zou, Mengting Niu, Chunyu Wang
2025	J	`jnl`	Quality Scores Compression of Genomic Sequencing Data: A Comprehensive Review and Performance Evaluation. IEEE Trans. Comput. Biol. Bioinform. Yuansheng Liu, Tao Tang, Zexuan Zhu, Xiangxiang Zeng, Quan Zou, Keqin Li
2025	J	`jnl`	ReAlign-P: a vertical iterative realignment method for protein multiple sequence alignment. Bioinform. Yixiao Zhai, Pinglu Zhang, Quan Zou, Ximei Luo
2025	—	`conf`	ReAlign-Star: An Optimized Realignment Method for Multiple Sequence Alignment, Targeting Star Algorithm Tools. ICIC (26) Yixiao Zhai, Pinglu Zhang, Yi Liu, Quan Zou
2025	J	`jnl`	SGPS-IMR: Efficiently inferring microbial resistance using self-supervised graph perturbation strategy. Expert Syst. Appl. Wentao Wang, Linlin Zhuo, Zhecheng Zhou, Xiangzheng Fu, Quan Zou
2025	J	`jnl`	SQ-DiffuPep: A multimodal information-guided quantitative latent diffusion model for antimicrobial peptide discovery. Inf. Fusion Luoda Tan, Li Wang, Xuanbai Ren, Quan Zou, Xiaojun Yao, Xiangxiang Zeng, Xiangzheng Fu
2025	J	`jnl`	ST-GCP: a graph convolutional network model with contrastive consistency and permutation for spatial transcriptomics. Briefings Bioinform. Yajie Meng, Yongkang Wang, Cheng Guo, Xianfang Tang, Zilong Zhang, Feifei Cui, Xiangzheng Fu, Quan Zou, Xu Lu, Junlin Xu
2025	J	`jnl`	Self-Cumulative Contrastive Graph Clustering. IEEE CAA J. Autom. Sinica Xiaoqiang Yan, Kun Deng, Quan Zou, Zhen Tian, Hui Yu
2025	—	`conf`	SeqAlignXGBoost: Sequence Alignment and Feature Selection for m1A Modification Site Identification. ICIC (28) Yizheng Wang, Yijie Ding, Quan Zou
2025	J	`jnl`	Supervised pre-training for feature extraction in cell type annotation of single-cell multi-omics data. Appl. Soft Comput. Yongqing Zhang, Tianhao Li, Yuhang Liu, Hong Luo, Yugui Xu, Zixuan Wang, Quan Zou
2025	J	`jnl`	TXSelect: A multi-task learning model to identify secretory effectors. PLoS Comput. Biol. Jing Li, Qing Liu, Quan Zou, Chao Zhan
2025	J	`jnl`	TargetCLP: clathrin proteins prediction combining transformed and evolutionary scale modeling-based multi-view features via weighted feature integration approach. Briefings Bioinform. Matee Ullah, Shahid Akbar, Ali Raza, Kashif Ahmad Khan, Quan Zou
2025	J	`jnl`	Trans-MoRFs: A Disordered Protein Predictor Based on the Transformer Architecture. IEEE J. Biomed. Health Informatics Chaolu Meng, Yunyun Shi, Xueliang Fu, Quan Zou, Wu Han
2025	—	`conf`	UPDMIA: Unified Processing of Diverse Medical Imaging Data via a Multi-Channel EfficientNet Architecture. BIBM Binyun Yang, Quan Zou, Yansu Wang
2025	J	`jnl`	m5U-HybridNet: Integrating an RNA Foundation Model with CNN Features for Accurate Prediction of 5-Methyluridine Modification Sites. J. Chem. Inf. Model. Xinyu Li, Zhenjie Luo, Jingwei Lv, Chao Yang, Shankai Yan, Junlin Xu, Yajie Meng, Leyi Wei, Zilong Zhang, Quan Zou, Feifei Cui
2025	J	`jnl`	metaTP: a meta-transcriptome data analysis pipeline with integrated automated workflows. BMC Bioinform. Limuxuan He, Quan Zou, Yansu Wang
2025	J	`jnl`	pACPs-DNN: Predicting anticancer peptides using novel peptide transformation into evolutionary and structure matrix-based images with self-attention deep learning model. Comput. Biol. Chem. Shahid, Maqsood Hayat, Ali Raza, Shahid Akbar, Wajdi Alghamdi, Nadeem Iqbal, Quan Zou
2025	J	`jnl`	stHGC: a self-supervised graph representation learning for spatial domain recognition with hybrid graph and spatial regularization. Briefings Bioinform. Runqing Wang, Qiguo Dai, Xiaodong Duan, Quan Zou
2024	J	`jnl`	A two-task predictor for discovering phase separation proteins and their undergoing mechanism. Briefings Bioinform. Yetong Zhou, Shengming Zhou, Yue Bi, Quan Zou, Cangzhi Jia
2024	—	`conf`	AAHLDMA: Predicting Drug-Microbe Associations Based on Bridge Graph Learning. ICIC (LNBI 2) Yaojia Chen, Mengting Niu, Yi Liu, Jiacheng Wang, Yijie Ding, Quan Zou
2024	J	`jnl`	AGML: Adaptive Graph-Based Multi-Label Learning for Prediction of RBP and as Event Associations During EMT. IEEE ACM Trans. Comput. Biol. Bioinform. Yushan Qiu, Wensheng Chen, Wai-Ki Ching, Hongmin Cai, Hao Jiang, Quan Zou
2024	J	`jnl`	AMDGT: Attention aware multi-modal fusion using a dual graph transformer for drug-disease associations prediction. Knowl. Based Syst. Junkai Liu, Shixuan Guan, Quan Zou, Hongjie Wu, Prayag Tiwari, Yijie Ding
2024	J	`jnl`	AMPpred-MFA: An Interpretable Antimicrobial Peptide Predictor with a Stacking Architecture, Multiple Features, and Multihead Attention. J. Chem. Inf. Model. Changjiang Li, Quan Zou, Cangzhi Jia, Jia Zheng
2024	J	`jnl`	Adversarial regularized autoencoder graph neural network for microbe-disease associations prediction. Briefings Bioinform. Limuxuan He, Quan Zou, Qi Dai, Shuang Cheng, Yansu Wang
2024	J	`jnl`	AttentionMGT-DTA: A multi-modal drug-target affinity prediction using graph transformer and attention mechanism. Neural Networks Hongjie Wu, Junkai Liu, Tengsheng Jiang, Quan Zou, Shujie Qi, Zhiming Cui, Prayag Tiwari, Yijie Ding
2024	J	`jnl`	AutoEdge-CCP: A novel approach for predicting cancer-associated circRNAs and drugs based on automated edge embedding. PLoS Comput. Biol. Yaojia Chen, Jiacheng Wang, Chunyu Wang, Quan Zou
2024	—	`conf`	Cell-Specific Highly Correlated Network for Self-Supervised Distillation in Cell Type Annotation. BIBM Tianhao Li, Yugui Xu, Sihan He, Yuhang Liu, Zixuan Wang, Zhigan Zhou, Yongqing Zhang, Quan Zou
2024	J	`jnl`	CircSI-SSL: circRNA-binding site identification based on self-supervised learning. Bioinform. Chao Cao, Chunyu Wang, Shuhong Yang, Quan Zou
2024	J	`jnl`	Deep Generative Models in J. Chem. Inf. Model. Chao Pang, Jianbo Qiao, Xiangxiang Zeng, Quan Zou, Leyi Wei
2024	J	`jnl`	DeepAIPs-Pred: Predicting Anti-Inflammatory Peptides Using Local Evolutionary Transformation Images and Structural Embedding-Based Optimal Descriptors with Self-Normalized BiTCNs. J. Chem. Inf. Model. Shahid Akbar, Matee Ullah, Ali Raza, Quan Zou, Wajdi Alghamdi
2024	J	`jnl`	DeepAVP-TPPred: identification of antiviral peptides using transformed image-based localized descriptors and binary tree growth algorithm. Bioinform. Matee Ullah, Shahid Akbar, Ali Raza, Quan Zou
2024	J	`jnl`	Deepstacked-AVPs: predicting antiviral peptides using tri-segment evolutionary profile and word embedding based multi-perspective features with deep stacking model. BMC Bioinform. Shahid Akbar, Ali Raza, Quan Zou
2024	J	`jnl`	Diff-AMP: tailored designed antimicrobial peptide framework with all-in-one generation, identification, prediction and optimization. Briefings Bioinform. Rui Wang, Tao Wang, Linlin Zhuo, Jinhang Wei, Xiangzheng Fu, Quan Zou, Xiaojun Yao
2024	J	`jnl`	Drug repositioning by multi-aspect heterogeneous graph contrastive learning and positive-fusion negative sampling strategy. Inf. Fusion Junkai Liu, Fuyuan Hu, Quan Zou, Prayag Tiwari, Hongjie Wu, Yijie Ding
2024	J	`jnl`	Drug-target interaction predictions with multi-view similarity network fusion strategy and deep interactive attention mechanism. Bioinform. Wei Song, Lewen Xu, Chenguang Han, Zhen Tian, Quan Zou
2024	J	`jnl`	ECD-CDGI: An efficient energy-constrained diffusion model for cancer driver gene identification. PLoS Comput. Biol. Tao Wang, Linlin Zhuo, Yifan Chen, Xiangzheng Fu, Xiangxiang Zeng, Quan Zou
2024	J	`jnl`	FEOpti-ACVP: identification of novel anti-coronavirus peptide sequences based on feature engineering and optimization. Briefings Bioinform. Jici Jiang, Hongdi Pei, Jiayu Li, Mingxin Li, Quan Zou, Zhibin Lv
2024	J	`jnl`	FMAlign2: a novel fast multiple nucleotide sequence alignment method for ultralong datasets. Bioinform. Pinglu Zhang, Huan Liu, Yanming Wei, Yixiao Zhai, Qinzhong Tian, Quan Zou
2024	J	`jnl`	Fuzzy Neural Tangent Kernel Model for Identifying DNA N4-Methylcytosine Sites. IEEE Trans. Fuzzy Syst. Yijie Ding, Prayag Tiwari, Fei Guo, Quan Zou, Weiping Ding
2024	J	`jnl`	GraphADT: empowering interpretable predictions of acute dermal toxicity with multi-view graph pooling and structure remapping. Bioinform. Xinqian Ma, Xiangzheng Fu, Tao Wang, Linlin Zhuo, Quan Zou
2024	J	`jnl`	HAlign 4: a new strategy for rapidly aligning millions of sequences. Bioinform. Tong Zhou, Pinglu Zhang, Quan Zou, Wu Han
2024	J	`jnl`	Hyb_SEnc: An Antituberculosis Peptide Predictor Based on a Hybrid Feature Vector and Stacked Ensemble Learning. IEEE ACM Trans. Comput. Biol. Bioinform. Xiuhao Fu, Hao Duan, Xiaofeng Zang, Chunling Liu, Xingfeng Li, Qingchen Zhang, Zilong Zhang, Quan Zou, Feifei Cui
2024	J	`jnl`	Identification of Drug-Side-Effect Association via Multiview Semisupervised Sparse Model. IEEE Trans. Artif. Intell. Yijie Ding, Fei Guo, Prayag Tiwari, Quan Zou
2024	J	`jnl`	Identification of human microRNA-disease association via low-rank approximation-based link propagation and multiple kernel learning. Frontiers Comput. Sci. Yizheng Wang, Xin Zhang, Ying Ju, Qing Liu, Quan Zou, Yazhou Zhang, Yijie Ding, Ying Zhang
2024	J	`jnl`	Identification, characterization and expression analysis of circRNA encoded by SARS-CoV-1 and SARS-CoV-2. Briefings Bioinform. Mengting Niu, Chunyu Wang, Yaojia Chen, Quan Zou, Lei Xu
2024	J	`jnl`	Identifying nucleotide-binding leucine-rich repeat receptor and pathogen effector pairing using transfer-learning and bilinear attention network. Bioinform. Baixue Qiao, Shuda Wang, Mingjun Hou, Haodi Chen, Zhengwenyang Zhou, Xueying Xie, Shaozi Pang, Chunxue Yang, Fenglong Yang, Quan Zou, Shanwen Sun
2024	J	`jnl`	Integrated convolution and self-attention for improving peptide toxicity prediction. Bioinform. Shihu Jiao, Xiucai Ye, Tetsuya Sakurai, Quan Zou, Ruijun Liu
2024	J	`jnl`	Joint deep autoencoder and subgraph augmentation for inferring microbial responses to drugs. Briefings Bioinform. Zhecheng Zhou, Linlin Zhuo, Xiangzheng Fu, Quan Zou
2024	J	`jnl`	MAMLCDA: A Meta-Learning Model for Predicting circRNA-Disease Association Based on MAML Combined With CNN. IEEE J. Biomed. Health Informatics Yuanyi Tian, Quan Zou, Chunyu Wang, Cangzhi Jia
2024	J	`jnl`	MFPSP: Identification of fungal species-specific phosphorylation site using offspring competition-based genetic algorithm. PLoS Comput. Biol. Chao Wang, Quan Zou
2024	J	`jnl`	MS-BACL: enhancing metabolic stability prediction through bond graph augmentation and contrastive learning. Briefings Bioinform. Tao Wang, Zhen Li, Linlin Zhuo, Yifan Chen, Xiangzheng Fu, Quan Zou
2024	J	`jnl`	MVST: Identifying spatial domains of spatial transcriptomes from multiple views using multi-view graph convolutional networks. PLoS Comput. Biol. Hao Duan, Qingchen Zhang, Feifei Cui, Quan Zou, Zilong Zhang
2024	J	`jnl`	Multi-source data integration for explainable miRNA-driven drug discovery. Future Gener. Comput. Syst. Zhen Li, Qingquan Liao, Wenbin Liu, Peng Xu, Linlin Zhuo, Xiangzheng Fu, Quan Zou
2024	J	`jnl`	Multiple Kronecker RLS fusion-based link propagation for drug-side effect prediction. CoRR Yuqing Qian, Ziyu Zheng, Prayag Tiwari, Yijie Ding, Quan Zou
2024	J	`jnl`	Multiple Kronecker RLS fusion-based link propagation for drug-side effect prediction. Trans. Mach. Learn. Res. Yuqing Qian, Ziyu Zheng, Prayag Tiwari, Yijie Ding, Quan Zou
2024	J	`jnl`	Overcoming CRISPR-Cas9 off-target prediction hurdles: A novel approach with ESB rebalancing strategy and CRISPR-MCA model. PLoS Comput. Biol. Yanpeng Yang, Yanyi Zheng, Quan Zou, Jian Li, Hailin Feng
2024	J	`jnl`	Prediction of Potential miRNA-Disease Associations Based on a Masked Graph Autoencoder. IEEE ACM Trans. Comput. Biol. Bioinform. Hailin Feng, Chenchen Ke, Quan Zou, Zhechen Zhu, Tongcun Liu
2024	J	`jnl`	PseU-KeMRF: A Novel Method for Identifying RNA Pseudouridine Sites. IEEE ACM Trans. Comput. Biol. Bioinform. Mingshuai Chen, Quan Zou, Ren Qi, Yijie Ding
2024	—	`conf`	RNASite: A one-stop tool website that integrates multiple RNA modification site databases and servers. BIBM Jiahao Yuan, Xingfeng Li, Zilong Zhang, Qingchen Zhang, Quan Zou, Feifei Cui
2024	J	`jnl`	Random subsequence forests. Inf. Sci. Zengyou He, Jiaqi Wang, Mudi Jiang, Lianyu Hu, Quan Zou
2024	J	`jnl`	Revisiting drug-protein interaction prediction: a novel global-local perspective. Bioinform. Zhecheng Zhou, Qingquan Liao, Jinhang Wei, Linlin Zhuo, Xiaonan Wu, Xiangzheng Fu, Quan Zou
2024	J	`jnl`	SBSM-Pro: support bio-sequence machine for proteins. Sci. China Inf. Sci. Yizheng Wang, Yixiao Zhai, Yijie Ding, Quan Zou
2024	J	`jnl`	Sequence homology score-based deep fuzzy network for identifying therapeutic peptides. Neural Networks Xiaoyi Guo, Ziyu Zheng, Kang Hao Cheong, Quan Zou, Prayag Tiwari, Yijie Ding
2024	—	`conf`	Spatial Domain Identifying: Graph Attention Network with Two Different Decoders. ICIC (LNBI 1) Yi Liu, Quan Zou
2024	J	`jnl`	StackedEnC-AOP: prediction of antioxidant proteins using transform evolutionary and sequential features based multi-scale vector with stacked ensemble learning. BMC Bioinform. Gul Rukh, Shahid Akbar, Gauhar Rehman, Fawaz Khaled Alarfaj, Quan Zou
2024	J	`jnl`	TPMA: A two pointers meta-alignment tool to ensemble different multiple nucleic acid sequence alignments. PLoS Comput. Biol. Yixiao Zhai, Jiannan Chao, Yizheng Wang, Pinglu Zhang, Furong Tang, Quan Zou
2024	J	`jnl`	iAFPs-Mv-BiTCN: Predicting antifungal peptides using self-attention transformer embedding and transform evolutionary based multi-view features with bidirectional temporal convolutional networks. Artif. Intell. Medicine Shahid Akbar, Quan Zou, Ali Raza, Fawaz Khaled Alarfaj
2024	J	`jnl`	iProps: A Comprehensive Software Tool for Protein Classification and Analysis With Automatic Machine Learning Capabilities and Model Interpretation Capabilities. IEEE J. Biomed. Health Informatics Changli Feng, Haiyan Wei, Chugui Xu, Bin Feng, Xiaorong Zhu, Jing Liu, Quan Zou
2024	J	`jnl`	scDFN: enhancing single-cell RNA-seq clustering with deep fusion networks. Briefings Bioinform. Tianxiang Liu, Cangzhi Jia, Yue Bi, Xudong Guo, Quan Zou, Fuyi Li
2024	J	`jnl`	scMNMF: a novel method for single-cell multi-omics clustering based on matrix factorization. Briefings Bioinform. Yushan Qiu, Dong Guo, Pu Zhao, Quan Zou
2024	J	`jnl`	scRNMF: An imputation method for single-cell RNA-seq data by robust and non-negative matrix factorization. PLoS Comput. Biol. Yuqing Qian, Quan Zou, Mengyuan Zhao, Yi Liu, Fei Guo, Yijie Ding
2024	J	`jnl`	scTPC: a novel semisupervised deep clustering model for scRNA-seq data. Bioinform. Yushan Qiu, Lingfei Yang, Hao Jiang, Quan Zou
2023	J	`jnl`	AIPs-SnTCN: Predicting Anti-Inflammatory Peptides Using fastText and Transformer Encoder-Based Hybrid Word Embedding with Self-Normalized Temporal Convolutional Networks. J. Chem. Inf. Model. Ali Raza, Jamal Uddin, Abdullah Almuhaimeed, Shahid Akbar, Quan Zou, Ashfaq Ahmad
2023	J	`jnl`	Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites. Bioinform. Shihu Jiao, Xiucai Ye, Chunyan Ao, Tetsuya Sakurai, Quan Zou, Lei Xu
2023	J	`jnl`	CoraL: interpretable contrastive meta-learning for the prediction of cancer-associated ncRNA-encoded small peptides. Briefings Bioinform. Zhongshen Li, Junru Jin, Wenjia He, Wentao Long, Haoqing Yu, Xin Gao, Kenta Nakai, Quan Zou, Leyi Wei
2023	J	`jnl`	Decision Tree for Sequences. IEEE Trans. Knowl. Data Eng. Zengyou He, Ziyao Wu, Guangyao Xu, Yan Liu, Quan Zou
2023	J	`jnl`	Dimensionality reduction and visualization of single-cell RNA-seq data with an improved deep variational autoencoder. Briefings Bioinform. Jing Jiang, Junlin Xu, Yuansheng Liu, Bosheng Song, Xiulan Guo, Xiangxiang Zeng, Quan Zou
2023	J	`jnl`	Enhancer-FRL: Improved and Robust Identification of Enhancers and Their Activities Using Feature Representation Learning. IEEE ACM Trans. Comput. Biol. Bioinform. Chao Wang, Quan Zou, Ying Ju, Hua Shi
2023	—	`conf`	Exploring Parameter-Efficient Fine-Tuning of a Large-Scale Pre-Trained Model for scRNA-seq Cell Type Annotation. BIBM Yuhang Liu, Tianhao Li, Zixuan Wang, Guiquan Zhu, Yongqing Zhang, Quan Zou
2023	J	`jnl`	GSCtool: A Novel Descriptor that Characterizes the Genome for Applying Machine Learning in Genomics. Adv. Intell. Syst. Zijie Shen, Enhui Shen, Qian-Hao Zhu, Longjiang Fan, Quan Zou, Chu-Yu Ye
2023	—	`conf`	HGTDG: An Interpretable Heterogeneous Graph Transformer Framework for Cancer Driver Gene Prediction. BIBM Shuwen Xiong, Zixuan Wang, Junming Zhang, Guiquan Zhu, Yongqing Zhang, Quan Zou
2023	—	`conf`	Human-Spa: An Online Platform Based on Spatial Transcriptome Data for Diseases of Human Systems. BIBM Yunyun Su, Feifei Cui, Shiyu Yan, Quan Zou, Chen Cao, Zilong Zhang
2023	—	`conf`	KDProg: A Knowledge distillation graph neural network for cancer prognosis prediction and analysis. BIBM Shuwen Xiong, Zixuan Wang, Junming Zhang, Hong Luo, Yongqing Zhang, Quan Zou
2023	J	`jnl`	Laplacian Regularized Sparse Representation Based Classifier for Identifying DNA N4-Methylcytosine Sites via $L_{2,1/2}$L2,1/2-Matrix Norm. IEEE ACM Trans. Comput. Biol. Bioinform. Yijie Ding, Wenying He, Jijun Tang, Quan Zou, Fei Guo
2023	J	`jnl`	MMiKG: a knowledge graph-based platform for path mining of microbiota-mental diseases interactions. Briefings Bioinform. Haoran Sun, Zhaoqi Song, Qiuming Chen, Meiling Wang, Furong Tang, Lijun Dou, Quan Zou, Fenglong Yang
2023	J	`jnl`	Matrix reconstruction with reliable neighbors for predicting potential MiRNA-disease associations. Briefings Bioinform. Hailin Feng, Dongdong Jin, Jian Li, Yane Li, Quan Zou, Tongcun Liu
2023	J	`jnl`	Multi-View Kernel Sparse Representation for Identification of Membrane Protein Types. IEEE ACM Trans. Comput. Biol. Bioinform. Yuqing Qian, Yijie Ding, Quan Zou, Fei Guo
2023	J	`jnl`	Multi-correntropy fusion based fuzzy system for predicting DNA N4-methylcytosine sites. Inf. Fusion Yijie Ding, Prayag Tiwari, Fei Guo, Quan Zou
2023	J	`jnl`	Optimization of drug-target affinity prediction methods through feature processing schemes. Bioinform. Xiaoqing Ru, Quan Zou, Chen Lin
2023	J	`jnl`	PCB: A pseudotemporal causality-based Bayesian approach to identify EMT-associated regulatory relationships of AS events and RBPs during breast cancer progression. PLoS Comput. Biol. Liangjie Sun, Yushan Qiu, Wai-Ki Ching, Pu Zhao, Quan Zou
2023	J	`jnl`	Predicting active enhancers with DNA methylation and histone modification. BMC Bioinform. Ximei Luo, Qun Li, Yifan Tang, Yan Liu, Quan Zou, Jie Zheng, Ying Zhang, Lei Xu
2023	J	`jnl`	Protein-DNA Binding Residues Prediction Using a Deep Learning Model With Hierarchical Feature Extraction. IEEE ACM Trans. Comput. Biol. Bioinform. Shixuan Guan, Quan Zou, Hongjie Wu, Yijie Ding
2023	J	`jnl`	Recall DNA methylation levels at low coverage sites using a CNN model in WGBS. PLoS Comput. Biol. Ximei Luo, Yansu Wang, Quan Zou, Lei Xu
2023	J	`jnl`	SBSM-Pro: Support Bio-sequence Machine for Proteins. CoRR Yizheng Wang, Yixiao Zhai, Yijie Ding, Quan Zou
2023	J	`jnl`	SSNMDI: a novel joint learning model of semi-supervised non-negative matrix factorization and data imputation for clustering of single-cell RNA-seq data. Briefings Bioinform. Yushan Qiu, Chang Yan, Pu Zhao, Quan Zou
2023	J	`jnl`	Subspace projection-based weighted echo state networks for predicting therapeutic peptides. Knowl. Based Syst. Xiaoyi Guo, Prayag Tiwari, Quan Zou, Yijie Ding
2023	—	`conf`	Virtual Screening of Traditional Chinese Medicine for Discovery of Potential Anti-SARS-CoV-2 Lead Molecules. ICBBT Xin Zhang, Quan Zou
2023	J	`jnl`	WMSA 2: a multiple DNA/RNA sequence alignment tool implemented with accurate progressive mode and a fast win-win mode combining the center star and progressive strategies. Briefings Bioinform. Juntao Chen, Jiannan Chao, Huan Liu, Fenglong Yang, Quan Zou, Furong Tang
2022	J	`jnl`	A comparison of deep learning-based pre-processing and clustering approaches for single-cell RNA sequencing data. Briefings Bioinform. Jiacheng Wang, Quan Zou, Chen Lin
2022	J	`jnl`	A hybrid deep learning framework for gene regulatory network inference from single-cell transcriptomic data. Briefings Bioinform. Mengyuan Zhao, Wenying He, Jijun Tang, Quan Zou, Fei Guo
2022	J	`jnl`	A multi-label learning model for predicting drug-induced pathology in multi-organ based on toxicogenomics data. PLoS Comput. Biol. Ran Su, Haitang Yang, Leyi Wei, Siqi Chen, Quan Zou
2022	J	`jnl`	A novel convolution attention model for predicting transcription factor binding sites by combination of sequence and shape. Briefings Bioinform. Yongqing Zhang, Zixuan Wang, Yuanqi Zeng, Yuhang Liu, Shuwen Xiong, Maocheng Wang, Jiliu Zhou, Quan Zou
2022	J	`jnl`	A novel fast multiple nucleotide sequence alignment method based on FM-index. Briefings Bioinform. Huan Liu, Quan Zou, Yun Xu
2022	J	`jnl`	A road map for happiness: The psychological factors related cell types in various parts of human body from single cell RNA-seq data analysis. Comput. Biol. Medicine Ziwei Wang, Ying Zhang, Qun Li, Quan Zou, Qing Liu
2022	J	`jnl`	A survey on the algorithm and development of multiple sequence alignment. Briefings Bioinform. Yongqing Zhang, Qiang Zhang, Jiliu Zhou, Quan Zou
2022	J	`jnl`	AMPpred-EL: An effective antimicrobial peptide prediction model based on ensemble learning. Comput. Biol. Medicine Hongwu Lv, Ke Yan, Yichen Guo, Quan Zou, Abd El-Latif Hesham, Bin Liu
2022	J	`jnl`	C-Loss Based Higher Order Fuzzy Inference Systems for Identifying DNA N4-Methylcytosine Sites. IEEE Trans. Fuzzy Syst. Yijie Ding, Prayag Tiwari, Quan Zou, Fei Guo, Hari Mohan Pandey
2022	J	`jnl`	CRBPDL: Identification of circRNA-RBP interaction sites using an ensemble neural network approach. PLoS Comput. Biol. Mengting Niu, Quan Zou, Chen Lin
2022	J	`jnl`	CRCF: A Method of Identifying Secretory Proteins of Malaria Parasites. IEEE ACM Trans. Comput. Biol. Bioinform. Changli Feng, Jin Wu, Haiyan Wei, Lei Xu, Quan Zou
2022	J	`jnl`	Characterizing viral circRNAs and their application in identifying circRNAs in viruses. Briefings Bioinform. Mengting Niu, Ying Ju, Chen Lin, Quan Zou
2022	J	`jnl`	Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction. Briefings Bioinform. Meng Zhang, Cangzhi Jia, Fuyi Li, Chen Li, Yan Zhu, Tatsuya Akutsu, Geoffrey I. Webb, Quan Zou, Lachlan J. M. Coin, Jiangning Song
2022	J	`jnl`	Deep learning models for disease-associated circRNA prediction: a review. Briefings Bioinform. Yaojia Chen, Jiacheng Wang, Chuyu Wang, Mingxin Liu, Quan Zou
2022	J	`jnl`	DeepCap-Kcr: accurate identification and investigation of protein lysine crotonylation sites based on capsule network. Briefings Bioinform. Jhabindra Khanal, Hilal Tayara, Quan Zou, Kil To Chong
2022	J	`jnl`	DeepM6ASeq-EL: prediction of human N6-methyladenosine (m Frontiers Comput. Sci. Juntao Chen, Quan Zou, Jing Li
2022	J	`jnl`	DeepMPM: a mortality risk prediction model using longitudinal EHR data. BMC Bioinform. Fan Yang, Jian Zhang, Wanyi Chen, Yongxuan Lai, Ying Wang, Quan Zou
2022	J	`jnl`	Distant metastasis identification based on optimized graph representation of gene interaction patterns. Briefings Bioinform. Ran Su, Yingying Zhu, Quan Zou, Leyi Wei
2022	J	`jnl`	Effector-GAN: prediction of fungal effector proteins based on pretrained deep representation learning methods and generative adversarial networks. Bioinform. Yansu Wang, Ximei Luo, Quan Zou
2022	—	`conf`	GATSDCD: Prediction of circRNA-Disease Associations Based on Singular Value Decomposition and Graph Attention Network. ICIC (2) Mengting Niu, Abd El-Latif Hesham, Quan Zou
2022	J	`jnl`	GMNN2CD: identification of circRNA-disease associations based on variational inference and graph Markov neural networks. Bioinform. Mengting Niu, Quan Zou, Chunyu Wang
2022	J	`jnl`	Identification and classification of promoters using the attention mechanism based on long short-term memory. Frontiers Comput. Sci. Qingwen Li, Lichao Zhang, Lei Xu, Quan Zou, Jin Wu, Qingyuan Li
2022	J	`jnl`	Identification of drug-side effect association via restricted Boltzmann machines with penalized term. Briefings Bioinform. Yuqing Qian, Yijie Ding, Quan Zou, Fei Guo
2022	J	`jnl`	Identification of drug-target interactions via multiple kernel-based triple collaborative matrix factorization. Briefings Bioinform. Yijie Ding, Jijun Tang, Fei Guo, Quan Zou
2022	—	`conf`	Kernel Risk Sensitive Loss-based Echo State Networks for Predicting Therapeutic Peptides with Sparse Learning. BIBM Xiaoyi Guo, Yuqing Qian, Prayag Tiwari, Quan Zou, Yijie Ding
2022	J	`jnl`	MDADP: A Webserver Integrating Database and Prediction Tools for Microbe-Disease Associations. IEEE J. Biomed. Health Informatics Lei Wang, Hao Li, Yuqi Wang, Yihong Tan, Zhiping Chen, Tingrui Pei, Quan Zou
2022	J	`jnl`	MDICC: novel method for multi-omics data integration and cancer subtype identification. Briefings Bioinform. Ying Yang, Sha Tian, Yushan Qiu, Pu Zhao, Quan Zou
2022	J	`jnl`	MLapSVM-LBS: Predicting DNA-binding proteins via a multiple Laplacian regularized support vector machine with local behavior similarity. Knowl. Based Syst. Mengwei Sun, Prayag Tiwari, Yuqing Qian, Yijie Ding, Quan Zou
2022	J	`jnl`	MechRetro is a chemical-mechanism-driven graph learning framework for interpretable retrosynthesis prediction and pathway planning. CoRR Yu Wang, Chao Pang, Yuzhe Wang, Yi Jiang, Junru Jin, Sirui Liang, Quan Zou, Leyi Wei
2022	J	`jnl`	NerLTR-DTA: drug-target binding affinity prediction based on neighbor relationship and learning to rank. Bioinform. Xiaoqing Ru, Xiucai Ye, Tetsuya Sakurai, Quan Zou
2022	J	`jnl`	NmRF: identification of multispecies RNA 2'-O-methylation modification sites from RNA sequences. Briefings Bioinform. Chunyan Ao, Quan Zou, Liang Yu
2022	—	`conf`	Predicting cell type-specific effects of variants on TF-DNA binding by meta-learning. BIBM Yongqing Zhang, Yuhang Liu, Zixuan Wang, Maocheng Wang, Shuwen Xiong, Quan Zou
2022	J	`jnl`	Predicting protein-peptide binding residues via interpretable deep learning. Bioinform. Ruheng Wang, Junru Jin, Quan Zou, Kenta Nakai, Leyi Wei
2022	J	`jnl`	SgRNA-RF: Identification of SgRNA On-Target Activity With Imbalanced Datasets. IEEE ACM Trans. Comput. Biol. Bioinform. Mengting Niu, Quan Zou
2022	J	`jnl`	Shared subspace-based radial basis function neural network for identifying ncRNAs subcellular localization. Neural Networks Yijie Ding, Prayag Tiwari, Fei Guo, Quan Zou
2022	J	`jnl`	Significance-Based Essential Protein Discovery. IEEE ACM Trans. Comput. Biol. Bioinform. Yan Liu, Hao Liang, Quan Zou, Zengyou He
2022	J	`jnl`	Single-cell RNA analysis reveals the potential risk of organ-specific cell types vulnerable to SARS-CoV-2 infections. Comput. Biol. Medicine Zilong Zhang, Feifei Cui, Chen Cao, Qingsuo Wang, Quan Zou
2022	—	`conf`	Single-cell TF-DNA binding prediction and analysis based on transfer learning framework. BIBM Zixuan Wang, Yongqing Zhang, Yun Yu, Maocheng Wang, Yuhang Liu, Quan Zou
2022	J	`jnl`	String kernels construction and fusion: a survey with bioinformatics application. Frontiers Comput. Sci. Ren Qi, Fei Guo, Quan Zou
2022	J	`jnl`	Structured Sparse Regularized TSK Fuzzy System for predicting therapeutic peptides. Briefings Bioinform. Xiaoyi Guo, Yizhang Jiang, Quan Zou
2022	J	`jnl`	WMSA: a novel method for multiple sequence alignment of DNA sequences. Bioinform. Yanming Wei, Quan Zou, Furong Tang, Liang Yu
2022	J	`jnl`	i6mA-Caps: a CapsuleNet-based framework for identifying DNA N6-methyladenine sites. Bioinform. Mobeen Ur Rehman, Hilal Tayara, Quan Zou, Kil To Chong
2022	J	`jnl`	iLncDA-LTR: Identification of lncRNA-disease associations by learning to rank. Comput. Biol. Medicine Hao Wu, Qi Liang, Wenxiang Zhang, Quan Zou, Abd El-Latif Hesham, Bin Liu
2022	J	`jnl`	webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration. Bioinform. Zilong Zhang, Feifei Cui, Wei Su, Lijun Dou, Anqi Xu, Chen Cao, Quan Zou
2022	J	`jnl`	webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study. Nucleic Acids Res. Chen Cao, Jianhua Wang, Devin Kwok, Feifei Cui, Zilong Zhang, Da Zhao, Mulin Jun Li, Quan Zou
2021	J	`jnl`	A Convolutional Neural Network Using Dinucleotide One-hot Encoder for identifying DNA N6-Methyladenine Sites in the Rice Genome. Neurocomputing Zhibin Lv, Hui Ding, Lei Wang, Quan Zou
2021	J	`jnl`	A comprehensive overview and critical evaluation of gene regulatory network inference technologies. Briefings Bioinform. Mengyuan Zhao, Wenying He, Jijun Tang, Quan Zou, Fei Guo
2021	J	`jnl`	A comprehensive review of the imbalance classification of protein post-translational modifications. Briefings Bioinform. Lijun Dou, Fenglong Yang, Lei Xu, Quan Zou
2021	J	`jnl`	A spectral clustering with self-weighted multiple kernel learning method for single-cell RNA-seq data. Briefings Bioinform. Ren Qi, Jin Wu, Fei Guo, Lei Xu, Quan Zou
2021	J	`jnl`	An in silico approach to identification, categorization and prediction of nucleic acid binding proteins. Briefings Bioinform. Lei Xu, Shanshan Jiang, Jin Wu, Quan Zou
2021	J	`jnl`	Anticancer peptides prediction with deep representation learning features. Briefings Bioinform. Zhibin Lv, Feifei Cui, Quan Zou, Lichao Zhang, Lei Xu
2021	J	`jnl`	Application of learning to rank in bioinformatics tasks. Briefings Bioinform. Xiaoqing Ru, Xiucai Ye, Tetsuya Sakurai, Quan Zou
2021	—	`ed.`	BECB 2021: 2021 International Symposium on Biomedical Engineering and Computational Biology, Nanchang, China, August 13 - 15, 2021 BECB Shiping Wen, Cihui Yang, Qishen Li, Quan Zou
2021	J	`jnl`	BP4RNAseq: a babysitter package for retrospective and newly generated RNA-seq data analyses using both alignment-based and alignment-free quantification method. Bioinform. Shanwen Sun, Lei Xu, Quan Zou, Guohua Wang
2021	—	`conf`	By hybrid neural networks for prediction and interpretation of transcription factor binding sites based on multi-omics. BIBM Yongqing Zhang, Zixuan Wang, Yuhang Liu, Libo Lu, Xiaoyao Tan, Quan Zou
2021	J	`jnl`	CarSite-II: an integrated classification algorithm for identifying carbonylated sites based on K-means similarity-based undersampling and synthetic minority oversampling techniques. BMC Bioinform. Yun Zuo, Jianyuan Lin, Xiangxiang Zeng, Quan Zou, Xiangrong Liu
2021	J	`jnl`	Computational biology and chemistry Special section editorial: Computational analyses for miRNA. Comput. Biol. Chem. Feifei Cui, Murong Zhou, Quan Zou
2021	J	`jnl`	Critical downstream analysis steps for single-cell RNA sequencing data. Briefings Bioinform. Zilong Zhang, Feifei Cui, Chen Lin, Lingling Zhao, Chunyu Wang, Quan Zou
2021	J	`jnl`	DeepATT: a hybrid category attention neural network for identifying functional effects of DNA sequences. Briefings Bioinform. Jiawei Li, Yuqian Pu, Jijun Tang, Quan Zou, Fei Guo
2021	J	`jnl`	DeepAc4C: a convolutional neural network model with hybrid features composed of physicochemical patterns and distributed representation information for identification of N4-acetylcytidine in mRNA. Bioinform. Chao Wang, Ying Ju, Quan Zou, Chen Lin
2021	J	`jnl`	DisBalance: a platform to automatically build balance-based disease prediction models and discover microbial biomarkers from microbiome data. Briefings Bioinform. Fenglong Yang, Quan Zou
2021	J	`jnl`	EP3: an ensemble predictor that accurately identifies type III secreted effectors. Briefings Bioinform. Jing Li, Leyi Wei, Fei Guo, Quan Zou
2021	J	`jnl`	Goals and approaches for each processing step for single-cell RNA sequencing data. Briefings Bioinform. Zilong Zhang, Feifei Cui, Chunyu Wang, Lingling Zhao, Quan Zou
2021	J	`jnl`	GutBalance: a server for the human gut microbiome-based disease prediction and biomarker discovery with compositionality addressed. Briefings Bioinform. Fenglong Yang, Quan Zou, Bo Gao
2021	J	`jnl`	High-resolution transcription factor binding sites prediction improved performance and interpretability by deep learning method. Briefings Bioinform. Yongqing Zhang, Zixuan Wang, Yuanqi Zeng, Jiliu Zhou, Quan Zou
2021	J	`jnl`	IEEE Access Special Section Editorial: Feature Representation and Learning Methods With Applications in Large-Scale Biological Sequence Analysis. IEEE Access Feifei Cui, Quan Zou, Qin Ma, Leyi Wei, Jijun Tang, Dariusz Mrozek
2021	J	`jnl`	ITP-Pred: an interpretable method for predicting, therapeutic peptides with fused features low-dimension representation. Briefings Bioinform. Lijun Cai, Li Wang, Xiangzheng Fu, Chenxing Xia, Xiangxiang Zeng, Quan Zou
2021	J	`jnl`	Identification of sub-Golgi protein localization by use of deep representation learning features. Bioinform. Zhibin Lv, Pingping Wang, Quan Zou, Qinghua Jiang
2021	J	`jnl`	Instance-Based Classification Through Hypothesis Testing. IEEE Access Zengyou He, Chaohua Sheng, Yan Liu, Quan Zou
2021	J	`jnl`	MMFGRN: a multi-source multi-model fusion method for gene regulatory network reconstruction. Briefings Bioinform. Wenying He, Jijun Tang, Quan Zou, Fei Guo
2021	J	`jnl`	Machine learning for phytopathology: from the molecular scale towards the network scale. Briefings Bioinform. Yansu Wang, Murong Zhou, Quan Zou, Lei Xu
2021	J	`jnl`	Matrix factorization-based data fusion for the prediction of RNA-binding proteins and alternative splicing event associations during epithelial-mesenchymal transition. Briefings Bioinform. Yushan Qiu, Wai-Ki Ching, Quan Zou
2021	—	`conf`	Membrane Protein Identification via Multi-view Graph Regularized k-Local Hyperplane Distance Nearest Neighbor Model. BIBM Mengwei Sun, Yuqing Qian, Yijie Ding, Jijun Tang, Quan Zou
2021	J	`jnl`	Minirmd: accurate and fast duplicate removal tool for short reads via multiple minimizers. Bioinform. Yuansheng Liu, Xiaocai Zhang, Quan Zou, Xiangxiang Zeng
2021	J	`jnl`	Molecular design in drug discovery: a comprehensive review of deep generative models. Briefings Bioinform. Yu Cheng, Yongshun Gong, Yuansheng Liu, Bosheng Song, Quan Zou
2021	—	`conf`	News Popularity Prediction with Local-Global Long-Short-Term Embedding. WISE (2) Shuai Fan, Chen Lin, Hui Li, Quan Zou
2021	J	`jnl`	Prediction of RNA-binding protein and alternative splicing event associations during epithelial-mesenchymal transition based on inductive matrix completion. Briefings Bioinform. Yushan Qiu, Wai-Ki Ching, Quan Zou
2021	J	`jnl`	Prediction of drug-target interactions based on multi-layer network representation learning. Neurocomputing Yifan Shang, Lin Gao, Quan Zou, Liang Yu
2021	J	`jnl`	Revisiting genome-wide association studies from statistical modelling to machine learning. Briefings Bioinform. Shanwen Sun, BenZhi Dong, Quan Zou
2021	J	`jnl`	SubLocEP: a novel ensemble predictor of subcellular localization of eukaryotic mRNA based on machine learning. Briefings Bioinform. Jing Li, Lichao Zhang, Shida He, Fei Guo, Quan Zou
2021	J	`jnl`	The accurate prediction and characterization of cancerlectin by a combined machine learning and GO analysis. Briefings Bioinform. Furong Tang, Lichao Zhang, Lei Xu, Quan Zou, Hailin Feng
2021	J	`jnl`	Using a low correlation high orthogonality feature set and machine learning methods to identify plant pentatricopeptide repeat coding gene/protein. Neurocomputing Changli Feng, Quan Zou, Donghua Wang
2021	J	`jnl`	VPTMdb: a viral posttranslational modification database. Briefings Bioinform. Yujia Xiang, Quan Zou, Lilin Zhao
2021	J	`jnl`	iPro2L-PSTKNC: A Two-Layer Predictor for Discovering Various Types of Promoters by Position Specific of Nucleotide Composition. IEEE J. Biomed. Health Informatics Yinuo Lyu, Wenying He, Shuhao Li, Quan Zou, Fei Guo
2021	J	`jnl`	rBPDL: Predicting RNA-Binding Proteins Using Deep Learning. IEEE J. Biomed. Health Informatics Mengting Niu, Jin Wu, Quan Zou, Zhendong Liu, Lei Xu
2020	J	`jnl`	Basic polar and hydrophobic properties are the main characteristics that affect the binding of transcription factors to methylation sites. Bioinform. Zijie Shen, Quan Zou
2020	J	`jnl`	CWLy-SVM: A support vector machine-based tool for identifying cell wall lytic enzymes. Comput. Biol. Chem. Chaolu Meng, Fei Guo, Quan Zou
2020	J	`jnl`	Clustering and classification methods for single-cell RNA-sequencing data. Briefings Bioinform. Ren Qi, Anjun Ma, Qin Ma, Quan Zou
2020	J	`jnl`	Comparative analysis and prediction of quorum-sensing peptides using feature representation learning and machine learning algorithms. Briefings Bioinform. Leyi Wei, Jie Hu, Fuyi Li, Jiangning Song, Ran Su, Quan Zou
2020	J	`jnl`	Computational methods for identifying the critical nodes in biological networks. Briefings Bioinform. Xiangrong Liu, Zengyan Hong, Juan Liu, Yuan Lin, Alfonso Rodríguez-Patón, Quan Zou, Xiangxiang Zeng
2020	J	`jnl`	Critical evaluation of web-based prediction tools for human protein subcellular localization. Briefings Bioinform. Yinan Shen, Yijie Ding, Jijun Tang, Quan Zou, Fei Guo
2020	J	`jnl`	DeepAVP: A Dual-Channel Deep Neural Network for Identifying Variable-Length Antiviral Peptides. IEEE J. Biomed. Health Informatics Jiawei Li, Yuqian Pu, Jijun Tang, Quan Zou, Fei Guo
2020	J	`jnl`	Empirical comparison and analysis of web-based cell-penetrating peptide prediction tools. Briefings Bioinform. Ran Su, Jie Hu, Quan Zou, Balachandran Manavalan, Leyi Wei
2020	J	`jnl`	Exploration of the correlation between GPCRs and drugs based on a learning to rank algorithm. Comput. Biol. Medicine Xiaoqing Ru, Lida Wang, Lihong Li, Hui Ding, Xiucai Ye, Quan Zou
2020	—	`conf`	GRRFNet: Guided Regularized Random Forest-based Gene Regulatory Network Inference Using Data Integration. BIBM Yongqing Zhang, Qingyuan Chen, Dongrui Gao, Quan Zou
2020	J	`jnl`	HITS-PR-HHblits: protein remote homology detection by combining PageRank and Hyperlink-Induced Topic Search. Briefings Bioinform. Bin Liu, Shuangyan Jiang, Quan Zou
2020	J	`jnl`	PPTPP: a novel therapeutic peptide prediction method using physicochemical property encoding and adaptive feature representation learning. Bioinform. Yu P. Zhang, Quan Zou
2020	J	`jnl`	Predicting disease-associated circular RNAs using deep forests combined with positive-unlabeled learning methods. Briefings Bioinform. Xiangxiang Zeng, Yue Zhong, Wei Lin, Quan Zou
2020	J	`jnl`	Protein Complexes Identification with Family-Wise Error Rate Control. IEEE ACM Trans. Comput. Biol. Bioinform. Zengyou He, Can Zhao, Hao Liang, Bo Xu, Quan Zou
2020	J	`jnl`	Reference-Based Sequence Classification. IEEE Access Zengyou He, Guangyao Xu, Chaohua Sheng, Bo Xu, Quan Zou
2020	J	`jnl`	Sequence clustering in bioinformatics: an empirical study. Briefings Bioinform. Quan Zou, Gang Lin, Xingpeng Jiang, Xiangrong Liu, Xiangxiang Zeng
2020	J	`jnl`	StackCPPred: a stacking and pairwise energy content-based prediction of cell-penetrating peptides and their uptake efficiency. Bioinform. Xiangzheng Fu, Lijun Cai, Xiangxiang Zeng, Quan Zou
2020	J	`jnl`	Transcription factors-DNA interactions in rice: identification and verification. Briefings Bioinform. Zijie Shen, Yuan Lin, Quan Zou
2020	J	`jnl`	mAML: an automated machine learning pipeline with a microbiome repository for human disease classification. Database J. Biol. Databases Curation Fenglong Yang, Quan Zou
2019	J	`jnl`	4mCPred: machine learning methods for DNA N4-methylcytosine sites prediction. Bioinform. Wenying He, Cangzhi Jia, Quan Zou
2019	C	`conf`	A Prototype System using Location-based Twitter Data for Disaster Management. IGARSS Quan Zou
2019	J	`jnl`	A novel collaborative filtering model for LncRNA-disease association prediction based on the Naïve Bayesian classifier. BMC Bioinform. Jingwen Yu, Zhanwei Xuan, Xiang Feng, Quan Zou, Lei Wang
2019	J	`jnl`	Advanced Machine Learning Techniques for Bioinformatics. IEEE ACM Trans. Comput. Biol. Bioinform. Quan Zou, Qi Liu
2019	J	`jnl`	Details in the evaluation of circular RNA detection tools: Reply to Chen and Chuang. PLoS Comput. Biol. Xiangxiang Zeng, Wei Lin, Maozu Guo, Quan Zou
2019	J	`jnl`	Exploiting Discriminative Regions of Brain Slices Based on 2D CNNs for Alzheimer's Disease Classification. IEEE Access Fujia Ren, Chenhui Yang, Qi Qiu, Nianyin Zeng, Chunting Cai, Chaoqun Hou, Quan Zou
2019	J	`jnl`	Exploring sequence-based features for the improved prediction of DNA N4-methylcytosine sites in multiple species. Bioinform. Leyi Wei, Shasha Luan, Luis Augusto Eijy Nagai, Ran Su, Quan Zou
2019	J	`jnl`	Fast Prediction of Protein Methylation Sites Using a Sequence-Based Feature Selection Technique. IEEE ACM Trans. Comput. Biol. Bioinform. Leyi Wei, Pengwei Xing, Gaotao Shi, Zhiliang Ji, Quan Zou
2019	—	`conf`	Grouped Correlational Generative Adversarial Networks for Discrete Electronic Health Records. BIBM Fan Yang, Zhongping Yu, Yunfan Liang, Xiaolu Gan, Kaibiao Lin, Quan Zou, Yifeng Zeng
2019	J	`jnl`	Identifying protein-protein interface via a novel multi-scale local sequence and structural representation. BMC Bioinform. Fei Guo, Quan Zou, Guang Yang, Dan Wang, Jijun Tang, Junhai Xu
2019	J	`jnl`	Instance-Based Classification through Hypothesis Testing. CoRR Zengyou He, Chaohua Sheng, Yan Liu, Quan Zou
2019	J	`jnl`	Integration of deep feature representations and handcrafted features to improve the prediction of N Neurocomputing Leyi Wei, Ran Su, Bing Wang, Xiuting Li, Quan Zou, Xing Gao
2019	J	`jnl`	Iterative feature representations improve N4-methylcytosine site prediction. Bioinform. Leyi Wei, Ran Su, Shasha Luan, Zhijun Liao, Balachandran Manavalan, Quan Zou, Xiaolong Shi
2019	J	`jnl`	Meta-Path Methods for Prioritizing Candidate Disease miRNAs. IEEE ACM Trans. Comput. Biol. Bioinform. Xuan Zhang, Quan Zou, Alfonso Rodríguez-Patón, Xiangxiang Zeng
2019	J	`jnl`	Multi-objective optimization and data analysis in informationization. Computing Kelvin Kian Loong Wong, Zhihua Liu, Quan Zou
2019	J	`jnl`	PEPred-Suite: improved and robust prediction of therapeutic peptides using adaptive feature representation learning. Bioinform. Leyi Wei, Chen Zhou, Ran Su, Quan Zou
2019	—	`conf`	Prediction of Thermophilic Proteins Using Voting Algorithm. IWBBIO (1) Jing Li, Pengfei Zhu, Quan Zou
2019	J	`jnl`	Reference-Based Sequence Classification. CoRR Zengyou He, Guangyao Xu, Chaohua Sheng, Bo Xu, Quan Zou
2019	J	`jnl`	Taxonomy dimension reduction for colorectal cancer prediction. Comput. Biol. Chem. Kaiyang Qu, Feng Gao, Fei Guo, Quan Zou
2018	J	`jnl`	70ProPred: a predictor for discovering sigma70 promoters based on combining multiple features. BMC Syst. Biol. Wenying He, Cangzhi Jia, Yucong Duan, Quan Zou
2018	J	`jnl`	Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture. BMC Bioinform. Shaoliang Peng, Minxia Cheng, Kaiwen Huang, Yingbo Cui, Zhiqiang Zhang, Runxin Guo, Xiaoyu Zhang, Shunyun Yang, Xiangke Liao, Yutong Lu, Quan Zou, Benyun Shi
2018	J	`jnl`	Identifying Cleavage Sites of Gelatinases A and B by Integrating Feature Computing Models. J. Univers. Comput. Sci. Quan Zou, Chi-Wei Chen, Hao-Chen Chang, Yen-Wei Chu
2018	J	`jnl`	O-GlcNAcPRED-II: an integrated classification algorithm for identifying O-GlcNAcylation sites based on fuzzy undersampling and a K-means PCA oversampling technique. Bioinform. Cangzhi Jia, Yun Zuo, Quan Zou
2018	J	`jnl`	Prediction of human protein subcellular localization using deep learning. J. Parallel Distributed Comput. Leyi Wei, Yijie Ding, Ran Su, Jijun Tang, Quan Zou
2018	J	`jnl`	Prediction of potential disease-associated microRNAs using structural perturbation method. Bioinform. Xiangxiang Zeng, Li Liu, Linyuan Lü, Quan Zou
2018	J	`jnl`	Processing Optimization of Typed Resources with Synchronized Storage and Computation Adaptation in Fog Computing. Wirel. Commun. Mob. Comput. Zhengyang Song, Yucong Duan, Shixiang Wan, Xiaobing Sun, Quan Zou, Honghao Gao, Donghai Zhu
2018	C	`conf`	Towards Cost Effective Privacy Provision for Typed Resources in IoT Environment (S). SEKE Yucong Duan, Zhengyang Song, Xiaoxian Yang, Quan Zou, Xiaobing Sun, Xinyue Zhang
2018	J	`jnl`	Tumor origin detection with tissue-specific miRNA and DNA methylation markers. Bioinform. Wei Tang, Shixiang Wan, Zhen Yang, Andrew E. Teschendorff, Quan Zou
2018	J	`jnl`	cmFSM: a scalable CPU-MIC coordinated drug-finding tool by frequent subgraph mining. BMC Bioinform. Shunyun Yang, Runxin Guo, Rui Liu, Xiangke Liao, Quan Zou, Benyun Shi, Shaoliang Peng
2017	C	`conf`	A Pay as You Use Resource Security Provision Approach Based on Data Graph, Information Graph and Knowledge Graph. IDEAL Lixu Shao, Yucong Duan, Lizhen Cui, Quan Zou, Xiaobing Sun
2017	J	`jnl`	A comprehensive overview and evaluation of circular RNA detection tools. PLoS Comput. Biol. Xiangxiang Zeng, Wei Lin, Maozu Guo, Quan Zou
2017	C	`conf`	Bidirectional value driven design between economical planning and technical implementation based on data graph, information graph and knowledge graph. SERA Lixu Shao, Yucong Duan, Xiaobing Sun, Quan Zou, Rongqi Jing, Jiami Lin
2017	J	`jnl`	CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment. BMC Bioinform. Xi Chen, Chen Wang, Shanjiang Tang, Ce Yu, Quan Zou
2017	J	`jnl`	HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing. Algorithms Mol. Biol. Shixiang Wan, Quan Zou
2017	J	`jnl`	HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing. CoRR Shixiang Wan, Quan Zou
2017	J	`jnl`	HPSLPred: An Ensemble Multi-label Classifier for Human Protein Subcellular Location Prediction with Imbalanced Source. CoRR Shixiang Wan, Quan Zou
2017	J	`jnl`	Inferring MicroRNA-Disease Associations by Random Walk on a Heterogeneous Network with Multiple Data Sources. IEEE ACM Trans. Comput. Biol. Bioinform. Yuansheng Liu, Xiangxiang Zeng, Zengyou He, Quan Zou
2017	—	`conf`	Iteratively collective prediction of disease-gene associations through the incomplete network. BIBM Xiangyi Meng, Quan Zou, Alfonso Rodríguez-Patón, Xiangxiang Zeng
2017	C	`conf`	Learning Planning and Recommendation Based on an Adaptive Architecture on Data Graph, Information Graph and Knowledge Graph. CollaborateCom Lixu Shao, Yucong Duan, Zhangbing Zhou, Quan Zou, Honghao Gao
2017	J	`jnl`	Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information. Inf. Sci. Leyi Wei, Jijun Tang, Quan Zou
2017	J	`jnl`	Machine learning and graph analytics in computational biomedicine. Artif. Intell. Medicine Quan Zou, Lei Chen, Tao Huang, Zhenguo Zhang, Yungang Xu
2017	J	`jnl`	Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework. J. Comput. Biol. Wenhe Su, Xiangke Liao, Yutong Lu, Quan Zou, Shaoliang Peng
2017	J	`jnl`	Prediction and Validation of Disease Genes Using HeteSim Scores. IEEE ACM Trans. Comput. Biol. Bioinform. Xiangxiang Zeng, Yuanlu Liao, Yuansheng Liu, Quan Zou
2017	J	`jnl`	Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy. CoRR Quan Zou, Shixiang Wan, Ying Ju, Jijun Tang, Xiangxiang Zeng
2017	J	`jnl`	Reconstructing evolutionary trees in parallel for massive sequences. BMC Syst. Biol. Quan Zou, Shixiang Wan, Xiangxiang Zeng, Zhanshan (Sam) Ma
2017	C	`conf`	Specifying architecture of knowledge graph with data graph, information graph, knowledge graph and wisdom graph. SERA Yucong Duan, Lixu Shao, Gongzhu Hu, Zhangbing Zhou, Quan Zou, Zhaoxin Lin
2017	Misc	`conf`	Wavelet-based single image super-resolution with an overall enhancement procedure. ICASSP Zongqing Lu, Quan Zou, Fei Zhou, Qingmin Liao
2017	J	`jnl`	基于分层筛选和动态更新的并行选择集成算法 (Selective Ensemble Learning Algorithm Based on Hierarchical Selection and Dynamic Updating in Parallel). 计算机科学 Meihong Wu, Jiasheng Guo, Ying Ju, Ziyu Lin, Quan Zou
2016	J	`jnl`	A novel features ranking metric with application to scalable visual and bioinformatics data classification. Neurocomputing Quan Zou, Jian-Cang Zeng, Liujuan Cao, Rongrong Ji
2016	J	`jnl`	Advanced learning for large-scale heterogeneous computing. Neurocomputing Quan Zou, Wei Liu, Michele Merler, Rongrong Ji
2016	J	`jnl`	Annotation-retrieval reinforcement by visual cognition modeling on manifold. Neurocomputing Zhiqiang Zeng, Hua Shi, Yun Wu, Quan Zou
2016	B	`conf`	BDSCyto: An Automated Approach for Identifying Cytokines Based on Best Dimension Searching. PRICAI Quan Zou, Shixiang Wan, Bing Han, Zhihui Zhan
2016	J	`jnl`	Finding the Best Classification Threshold in Imbalanced Classification. Big Data Res. Quan Zou, Sifa Xie, Ziyu Lin, Meihong Wu, Ying Ju
2016	—	`conf`	HPTree: Reconstructing phylogenetic trees for ultra-large unaligned DNA sequences via NJ model and Hadoop. BIBM Quan Zou, Shixiang Wan, Xiangxiang Zeng
2016	J	`jnl`	Hierarchical support vector machine based structural classification with fused hierarchies. Neurocomputing Shuo Zhao, Yahong Han, Quan Zou, Qinghua Hu
2016	J	`jnl`	Integrative approaches for predicting microRNA function and prioritizing disease-related microRNA using biological interaction networks. Briefings Bioinform. Xiangxiang Zeng, Xuan Zhang, Quan Zou
2016	—	`conf`	Latent factor model with heterogeneous similarity regularization for predicting gene-disease associations. BIBM Xiangxiang Zeng, Ningxiang Ding, Quan Zou
2016	—	`conf`	Multiple sequence alignment and reconstructing phylogenetic trees with Hadoop. BIBM Quan Zou
2016	J	`jnl`	Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy. BMC Syst. Biol. Quan Zou, Shixiang Wan, Ying Ju, Jijun Tang, Xiangxiang Zeng
2015	J	`jnl`	Asynchronous spiking neural P systems with rules on synapses. Neurocomputing Tao Song, Quan Zou, Xiangrong Liu, Xiangxiang Zeng
2015	J	`jnl`	HAlign: Fast multiple similar DNA/RNA sequence alignment based on the centre star strategy. Bioinform. Quan Zou, Qinghua Hu, Maozu Guo, Guohua Wang
2015	J	`jnl`	Identification of cytokine via an improved genetic algorithm. Frontiers Comput. Sci. Xiangxiang Zeng, Sisi Yuan, Xianxian Huang, Quan Zou
2015	Misc	`conf`	Selective ensemble learning with parallel optimization and hierarchical selection. ICMLC Jiasheng Guo, Jian-Cang Zeng, Jin-Xiu Chen, Quan Zou
2014	J	`jnl`	Decision Tree Classification Model for Popularity Forecast of Chinese Colleges. J. Appl. Math. Xiangxiang Zeng, Sisi Yuan, You Li, Quan Zou
2014	J	`jnl`	Improved and Promising Identificationof Human MicroRNAs by Incorporatinga High-Quality Negative Set. IEEE ACM Trans. Comput. Biol. Bioinform. Leyi Wei, Minghong Liao, Yue Gao, Rongrong Ji, Zengyou He, Quan Zou
2014	J	`jnl`	LibD3C: Ensemble classifiers with a clustering and dynamic selection strategy. Neurocomputing Chen Lin, Wenqiang Chen, Cheng Qiu, Yunfeng Wu, Sridhar Krishnan, Quan Zou
2014	J	`jnl`	Survey of MapReduce frame operation in bioinformatics. Briefings Bioinform. Quan Zou, Xu-Bin Li, Wen-Rui Jiang, Ziyu Lin, Gui-Lin Li, Ke Chen
2014	J	`jnl`	Using distances between Top-n-gram and residue pairs for protein remote homology detection. BMC Bioinform. Bin Liu, Jinghao Xu, Quan Zou, Ruifeng Xu, Xiaolong Wang, Qingcai Chen
2014	J	`jnl`	miRClassify: An advanced web server for miRNA family classification and annotation. Comput. Biol. Medicine Quan Zou, Yaozong Mao, Lingling Hu, Yunfeng Wu, Zhi-Liang Ji
2014	J	`jnl`	nDNA-prot: identification of DNA-binding proteins based on unbalanced classification. BMC Bioinform. Li Song, Dapeng Li, Xiangxiang Zeng, Yunfeng Wu, Li Guo, Quan Zou
2013	J	`jnl`	Hybrid pseudo-relevance feedback for microblog retrieval. J. Inf. Sci. Chen Lin, Chun Lin, Ziyu Lin, Quan Zou
2012	J	`jnl`	Identify content quality in online social networks. IET Commun. Chen Lin, Zhenhua Huang, Fan Yang, Quan Zou
2012	—	`conf`	Location and Route Tracking in University from Photos without GPS Information. PCM Mingxia Lin, Shi-chang Hu, Cuihua Li, Taisong Jin, Quan Zou
2012	J	`jnl`	PaGeFinder: quantitative identification of spatiotemporal pattern genes. Bioinform. Jian-Bo Pan, Shi-chang Hu, Hao Wang, Quan Zou, Zhi-Liang Ji
2012	C	`conf`	Performance Optimization of Analysis Rules in Real-Time Active Data Warehouses. APWeb Ziyu Lin, Dongzhan Zhang, Chen Lin, Yongxuan Lai, Quan Zou
2011	C	`conf`	Maintaining Internal Consistency of Report for Real-Time OLAP with Layer-Based View. APWeb Ziyu Lin, Yongxuan Lai, Chen Lin, Yi Xie, Quan Zou
2010	—	`conf`	Automatic extraction of ocean internal waves based on multi-scale fusion and elliptical tracking region method. ICIMCS Qicong Wang, Shaoling Shang, Qingkai Zhen, Yan Li, Quan Zou
2010	J	`jnl`	DuplexFinder: Predicting the miRNA - miRNA* duplex from the animal precursors. Int. J. Bioinform. Res. Appl. Quan Zou, Maozu Guo, Yang Liu, Ping Xuan
2010	J	`jnl`	TiSGeD: a database for tissue-specific genes. Bioinform. Sheng-Jian Xiao, Chi Zhang, Quan Zou, Zhi-Liang Ji
2009	—	`conf`	Novel H/ACA Box snoRNA Mining and Secondary Structure Prediction Algorithms. RSKT Quan Zou, Maozu Guo, Chunyu Wang, Yingpeng Han, Wenbin Li
2009	J	`jnl`	Predicting RNA secondary structure based on the class information and Hopfield network. Comput. Biol. Medicine Quan Zou, Tuo Zhao, Yang Liu, Maozu Guo
2008	—	`conf`	A Novel Comparative Sequence Analysis Method for ncRNA Secondary Structure Prediction without Multiple Sequence Alignment. ICNC (5) Quan Zou, Maozu Guo, Yang Liu, Zhi-An Xing
2008	—	`conf`	An Improved Diverse Density Algorithm for Multiple Overlapped Instances. ICNC (3) Lei Xu, Maozu Guo, Quan Zou, Yang Liu, Haifeng Li
2008	J	`jnl`	Interest filter vs. interest operator: Face recognition using Fisher linear discriminant based on interest filter representation. Pattern Recognit. Lett. Tuo Zhao, Zhizheng Liang, David Zhang, Quan Zou
2007	—	`conf`	RNA Secondary Structure Prediction Based on Forest Representation and Genetic Algorithm. ICNC (4) Taotao Zhang, Maozu Guo, Quan Zou