Qiangfeng Cliff Zhang

21 papers A* 2Misc 1Journal 18

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	CryoLVM: Self-supervised Learning from Cryo-EM Density Maps with Large Vision Models. CoRR Weining Fu, Kai Shu, Kui Xu, Qiangfeng Cliff Zhang
2026	J	`jnl`	CryoNet.Refine: A One-step Diffusion Model for Rapid Refinement of Structural Models with Cryo-EM Density Map Restraints. CoRR Fuyao Huang, Xiaozhu Yu, Kui Xu, Qiangfeng Cliff Zhang
2025	A*	`conf`	CryoDomain: Sequence-free Protein Domain Identification from Low-resolution Cryo-EM Density Maps. AAAI Muzhi Dai, Zhuoer Dong, Weining Fu, Kui Xu, Qiangfeng Cliff Zhang
2023	J	`jnl`	PrismNet: predicting protein-RNA interaction using Nucleic Acids Res. Yiran Xu, Jianghui Zhu, Wenze Huang, Kui Xu, Rui Yang, Qiangfeng Cliff Zhang, Lei Sun
2023	J	`jnl`	RNA Structural Dynamics Modulate EGFR-TKI Resistance Through Controlling Genom. Proteom. Bioinform. Boyang Shi, Ke An, Yueqin Wang, Yuhan Fei, Caixia Guo, Qiangfeng Cliff Zhang, Yun-Gui Yang, Xin Tian, Quancheng Kan
2021	J	`jnl`	A deep learning method for recovering missing signals in transcriptome-wide RNA structure profiles from probing experiments. Nat. Mach. Intell. Jing Gong, Kui Xu, Ziyuan Ma, Zhi John Lu, Qiangfeng Cliff Zhang
2021	J	`jnl`	RASP: an atlas of transcriptome-wide RNA secondary structure probing data. Nucleic Acids Res. Pan Li, Xiaolin Zhou, Kui Xu, Qiangfeng Cliff Zhang
2021	J	`jnl`	VRmol: an integrative web-based virtual reality system to explore macromolecular structure. Bioinform. Kui Xu, Nan Liu, Jingle Xu, Chunlong Guo, Lingyun Zhao, Hongwei Wang, Qiangfeng Cliff Zhang
2020	J	`jnl`	IRIS: A method for predicting in vivo RNA secondary structures using PARIS data. Quant. Biol. Jianyu Zhou, Pan Li, Wanwen Zeng, Wenxiu Ma, Zhipeng Lu, Rui Jiang, Qiangfeng Cliff Zhang, Tao Jiang
2020	J	`jnl`	Prediction and differential analysis of RNA secondary structure. Quant. Biol. Bo Yuan, Yao Lu, Qiangfeng Cliff Zhang, Lin Hou
2019	A*	`conf`	A2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes. AAAI Kui Xu, Zhe Wang, Jianping Shi, Hongsheng Li, Qiangfeng Cliff Zhang
2019	J	`jnl`	A^2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes. CoRR Kui Xu, Zhe Wang, Jianping Shi, Hongsheng Li, Qiangfeng Cliff Zhang
2018	J	`jnl`	Advances and challenges towards the study of RNA-RNA interactions in a transcriptome-wide scale. Quant. Biol. Jing Gong, Yanyan Ju, Di Shao, Qiangfeng Cliff Zhang
2018	J	`jnl`	RISE: a database of RNA interactome from sequencing experiments. Nucleic Acids Res. Jing Gong, Di Shao, Kui Xu, Zhipeng Lu, Zhi John Lu, Yu-Cheng T. Yang, Qiangfeng Cliff Zhang
2017	Misc	`conf`	Harnessing Big Data for Precision Medicine: Infrastructures and Applications. PSB Kun-Hsing Yu, Steven N. Hart, Rachel L. Goldfeder, Qiangfeng Cliff Zhang, Stephen C. J. Parker, Michael Snyder
2017	J	`jnl`	RNA Regulations and Functions Decoded by Transcriptome-wide RNA Structure Probing. Genom. Proteom. Bioinform. Meiling Piao, Lei Sun, Qiangfeng Cliff Zhang
2014	J	`jnl`	PredHS: a web server for predicting protein-protein interaction hot spots by using structural neighborhood properties. Nucleic Acids Res. Lei Deng, Qiangfeng Cliff Zhang, Zhigang Chen, Yang Meng, Jihong Guan, Shuigeng Zhou
2013	J	`jnl`	Boosting Prediction Performance of Protein-Protein Interaction Hot Spots by Using Structural Neighborhood Properties. J. Comput. Biol. Lei Deng, Jihong Guan, Xiaoming Wei, Yuan Yi, Qiangfeng Cliff Zhang, Shuigeng Zhou
2013	J	`jnl`	PrePPI: a structure-informed database of protein-protein interactions. Nucleic Acids Res. Qiangfeng Cliff Zhang, Donald Petrey, José Ignacio Garzón, Lei Deng, Barry Honig
2011	J	`jnl`	MarkUs: a server to navigate sequence-structure-function space. Nucleic Acids Res. Markus Fischer, Qiangfeng Cliff Zhang, Fabian Dey, Brian Y. Chen, Barry Honig, Donald Petrey
2011	J	`jnl`	PredUs: a web server for predicting protein interfaces using structural neighbors. Nucleic Acids Res. Qiangfeng Cliff Zhang, Lei Deng, Markus Fisher, Jihong Guan, Barry Honig, Donald Petrey

Nicolò Altamura is a security engineer and computer science researcher specializing in software protection, reverse engineering, program analysis, and binary deobfuscation. He holds a master's degree in Computer Science and Engineering from the University of Verona, graduating with honors, and works at emproof, focusing on software protection and the challenges of analyzing and understanding compiled software.

His research explores the relationship between program analysis and code obfuscation, with particular emphasis on how software transformations affect the ability of automated tools to recover program behavior. His interests span static analysis, binary analysis, decompilation, reverse engineering, and techniques for analyzing and simplifying obfuscated code.

Beyond academic research, Nicolò develops and contributes to tools for reverse engineering and software analysis. His projects include obfuscation_analysis, a Binary Ninja plugin for analyzing and simplifying obfuscated code; Pocket, an obfuscator for mixed Boolean-arithmetic expressions; and ptxNinja, a tool for reverse engineering NVIDIA GPU code represented in the PTX virtual instruction set.

His research also extends to binary datasets and software evolution. In 2026, he co-authored ASSEMBLAGE-DEEPHISTORY: A Cross-Build Binary Dataset with Temporal Coverage, a research work addressing the availability of binary data across multiple software builds and points in time, supporting research into binary analysis and changes between program versions.

Across his research, engineering work, and open-source contributions, Nicolò focuses on advancing the understanding, analysis, and protection of software against increasingly sophisticated obfuscation and reverse-engineering challenges.

Nicolò Altamura is not a football player. Please avoid reporting this kind of infromation.