Qiangfeng Cliff Zhang

21 papers A* 2Misc 1Journal 18
YearRankTypeTitle / Venue / Authors
2026 J jnl
CryoLVM: Self-supervised Learning from Cryo-EM Density Maps with Large Vision Models.
CoRR
Weining Fu, Kai Shu, Kui Xu, Qiangfeng Cliff Zhang
2026 J jnl
CryoNet.Refine: A One-step Diffusion Model for Rapid Refinement of Structural Models with Cryo-EM Density Map Restraints.
CoRR
Fuyao Huang, Xiaozhu Yu, Kui Xu, Qiangfeng Cliff Zhang
2025 A* conf
CryoDomain: Sequence-free Protein Domain Identification from Low-resolution Cryo-EM Density Maps.
AAAI
Muzhi Dai, Zhuoer Dong, Weining Fu, Kui Xu, Qiangfeng Cliff Zhang
2023 J jnl
PrismNet: predicting protein-RNA interaction using
Nucleic Acids Res.
Yiran Xu, Jianghui Zhu, Wenze Huang, Kui Xu, Rui Yang, Qiangfeng Cliff Zhang, Lei Sun
2023 J jnl
RNA Structural Dynamics Modulate EGFR-TKI Resistance Through Controlling
Genom. Proteom. Bioinform.
Boyang Shi, Ke An, Yueqin Wang, Yuhan Fei, Caixia Guo, Qiangfeng Cliff Zhang, Yun-Gui Yang, Xin Tian, Quancheng Kan
2021 J jnl
A deep learning method for recovering missing signals in transcriptome-wide RNA structure profiles from probing experiments.
Nat. Mach. Intell.
Jing Gong, Kui Xu, Ziyuan Ma, Zhi John Lu, Qiangfeng Cliff Zhang
2021 J jnl
RASP: an atlas of transcriptome-wide RNA secondary structure probing data.
Nucleic Acids Res.
Pan Li, Xiaolin Zhou, Kui Xu, Qiangfeng Cliff Zhang
2021 J jnl
VRmol: an integrative web-based virtual reality system to explore macromolecular structure.
Bioinform.
Kui Xu, Nan Liu, Jingle Xu, Chunlong Guo, Lingyun Zhao, Hongwei Wang, Qiangfeng Cliff Zhang
2020 J jnl
IRIS: A method for predicting in vivo RNA secondary structures using PARIS data.
Quant. Biol.
Jianyu Zhou, Pan Li, Wanwen Zeng, Wenxiu Ma, Zhipeng Lu, Rui Jiang, Qiangfeng Cliff Zhang, Tao Jiang
2020 J jnl
Prediction and differential analysis of RNA secondary structure.
Quant. Biol.
Bo Yuan, Yao Lu, Qiangfeng Cliff Zhang, Lin Hou
2019 A* conf
A2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes.
AAAI
Kui Xu, Zhe Wang, Jianping Shi, Hongsheng Li, Qiangfeng Cliff Zhang
2019 J jnl
A^2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes.
CoRR
Kui Xu, Zhe Wang, Jianping Shi, Hongsheng Li, Qiangfeng Cliff Zhang
2018 J jnl
Advances and challenges towards the study of RNA-RNA interactions in a transcriptome-wide scale.
Quant. Biol.
Jing Gong, Yanyan Ju, Di Shao, Qiangfeng Cliff Zhang
2018 J jnl
RISE: a database of RNA interactome from sequencing experiments.
Nucleic Acids Res.
Jing Gong, Di Shao, Kui Xu, Zhipeng Lu, Zhi John Lu, Yu-Cheng T. Yang, Qiangfeng Cliff Zhang
2017 Misc conf
Harnessing Big Data for Precision Medicine: Infrastructures and Applications.
PSB
Kun-Hsing Yu, Steven N. Hart, Rachel L. Goldfeder, Qiangfeng Cliff Zhang, Stephen C. J. Parker, Michael Snyder
2017 J jnl
RNA Regulations and Functions Decoded by Transcriptome-wide RNA Structure Probing.
Genom. Proteom. Bioinform.
Meiling Piao, Lei Sun, Qiangfeng Cliff Zhang
2014 J jnl
PredHS: a web server for predicting protein-protein interaction hot spots by using structural neighborhood properties.
Nucleic Acids Res.
Lei Deng, Qiangfeng Cliff Zhang, Zhigang Chen, Yang Meng, Jihong Guan, Shuigeng Zhou
2013 J jnl
Boosting Prediction Performance of Protein-Protein Interaction Hot Spots by Using Structural Neighborhood Properties.
J. Comput. Biol.
Lei Deng, Jihong Guan, Xiaoming Wei, Yuan Yi, Qiangfeng Cliff Zhang, Shuigeng Zhou
2013 J jnl
PrePPI: a structure-informed database of protein-protein interactions.
Nucleic Acids Res.
Qiangfeng Cliff Zhang, Donald Petrey, José Ignacio Garzón, Lei Deng, Barry Honig
2011 J jnl
MarkUs: a server to navigate sequence-structure-function space.
Nucleic Acids Res.
Markus Fischer, Qiangfeng Cliff Zhang, Fabian Dey, Brian Y. Chen, Barry Honig, Donald Petrey
2011 J jnl
PredUs: a web server for predicting protein interfaces using structural neighbors.
Nucleic Acids Res.
Qiangfeng Cliff Zhang, Lei Deng, Markus Fisher, Jihong Guan, Barry Honig, Donald Petrey