Qian Zhu

62 papers Misc 9Journal 29Unranked 24
YearRankTypeTitle / Venue / Authors
2024 — conf
Aligning Orphanet Classification to Identify Disease Characteristics among Rare Disease Clusters.
BIBM
Sungrim Moon, Jessica Maine, Ewy A. Mathé, Qian Zhu
2023 J jnl
Clustering rare diseases within an ontology-enriched knowledge graph.
J. Am. Medical Informatics Assoc.
Jaleal Sanjak, Jessica Binder, Arjun Singh Yadaw, Qian Zhu, Ewy A. Mathé
2023 J jnl
Dual projection learning with adaptive graph smoothing for multi-label classification.
Appl. Intell.
Zhifeng Liu, Rui-hang Cai, Timothy Apasiba Abeo, Qian Zhu, Cong-hua Zhou, Xiang-Jun Shen
2023 J jnl
Multi-dictionary induced low-rank representation with multi-manifold regularization.
Appl. Intell.
Jinghui Zhou, Xiangjun Shen, Sixing Liu, Liangjun Wang, Qian Zhu, Ping Qian
2023 J jnl
Multi-view Representation Induced Kernel Ensemble Support Vector Machine.
Neural Process. Lett.
Ebenezer Quayson, Ernest Domanaanmwi Ganaa, Qian Zhu, Xiang-Jun Shen
2023 — conf
Prediction of Drug Targets based on In Vitro Activity Profiles Toward Drug Repurposing for Rare Diseases.
BIBM
Binghan Xue, Ruili Huang, Qian Zhu, Yanji Xu
2023 — conf
User Centered Rare Disease Clinical Trial Knowledge Graph (RCTKG).
MedInfo
Jeremy Parker Yang, Devon Leadman, Richard M. Ballew, Eric Sid, Yanji Xu, Ewy A. Mathé, Qian Zhu
2022 J jnl
Editorial: Biomedical informatics applications in rare diseases.
Frontiers Artif. Intell.
Qian Zhu, Yong-Zi Chen, Yanji Xu
2022 J jnl
Experiments with LDA and Top2Vec for embedded topic discovery on social media data - A case study of cystic fibrosis.
Frontiers Artif. Intell.
Bradley A. Karas, Sue Qu, Yanji Xu, Qian Zhu
2022 — conf
Integrative Rare Disease Profile Creation via NormMap to Advance Rare Disease Research.
BIBM
Devon Leadman, Yanji Xu, Sue Qu, Qian Zhu
2022 Misc conf
Profiling Tox21 Bioassay Towards Drug Repurposing for Rare Diseases.
AMIA
Fang Liu, Yanji Xu, Jaleal Sanjak, Andrew Patt, Ruili Huang, Chunxu Qu, Qian Zhu
2022 J jnl
Rare disease-based scientific annotation knowledge graph.
Frontiers Artif. Intell.
Qian Zhu, Chunxu Qu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Ðac-Trung Nguyen, Eric Sid, Ewy A. Mathé, Yanji Xu
2022 — conf
Semantic Annotation of NIH Funding Data for Supporting Rare Disease Research.
BIBM
Szeling Hsu, Sue Qu, Yanji Xu, Qian Zhu
2021 — conf
Better Understand Rare Disease Patients' Needs by Analyzing Social Media Data - a Case Study of Cystic Fibrosis.
BIBM
Qian Zhu, Eric Sundstrom, Yanji Xu
2021 — conf
Data Normalization Improves Semantic Annotation - a Case Study of Rare Disease Name Annotation.
BIBM
Charlie Tang, Yanji Xu, Qian Zhu
2021 — conf
Scientific Evidence Based Knowledge Graph in Rare Diseases.
BIBM
Qian Zhu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Yanji Xu, Dac-Trung Nguyen, Ewy A. Mathé, Eric Sid
2020 J jnl
An integrative knowledge graph for rare diseases, derived from the Genetic and Rare Diseases Information Center (GARD).
J. Biomed. Semant.
Qian Zhu, Dac-Trung Nguyen, Ivan Grishagin, Noel Southall, Eric Sid, Anne Pariser
2019 J jnl
Hybrid Mortality Prediction using Multiple Source Systems.
CoRR
Isaac Mativo, Yelena Yesha, Michael A. Grasso, Tim Oates, Qian Zhu
2019 J jnl
Manifold Alignment via Global and Local Structures Preserving PCA Framework.
IEEE Access
Timothy Apasiba Abeo, Xiangjun Shen, Ernest Domanaanmwi Ganaa, Qian Zhu, Bing-Kun Bao, Zheng-Jun Zha
2019 J jnl
Multi-layer framework of identifying placenta related research towards Placenta Curated Research Dataset (PCRD) development for the PAT project.
J. Biomed. Informatics
Qian Zhu, Shanna Frierson, Alicia Francis, Lydia Rogers, Daniel Lyman
2019 J jnl
Sex, obesity, diabetes, and exposure to particulate matter among patients with severe asthma: Scientific insights from a comparative analysis of open clinical data sources during a five-day hackathon.
J. Biomed. Informatics
Karamarie Fecho, Stanley C. Ahalt, Saravanan Arunachalam, James Champion, Christopher G. Chute, Sarah Davis, Kenneth Gersing, Gustavo Glusman, Jennifer Hadlock, Jewel Lee, Emily R. Pfaff, Max Robinson, Eric Sid, Casey N. Ta, Hao Xu, Richard L. Zhu, Qian Zhu, David B. Peden
2016 — conf
Analyzing and retrieving illicit drug-related posts from social media.
BIBM
Tao Ding, Arpita Roy, Zhiyuan Chen, Qian Zhu, Shimei Pan
2016 — conf
Building Locally Discriminative Classifier Ensemble Through Classifier Fusion Among Nearest Neighbors.
PCM (1)
Xiangjun Shen, Wen-Chao Zhang, Wei Cai, Ben-Bright B. Benuw, Heping Song, Qian Zhu, Zheng-Jun Zha
2016 — conf
Network analysis with PubChem BioAssay: Preliminary study on drug abuse.
BHI
Weijian Qin, Qian Zhu
2016 J jnl
Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events.
J. Biomed. Semant.
Abra Guo, Rebecca Racz, Junguk Hur, Yu Lin, Zuoshuang Xiang, Lili Zhao, Jordan Rinder, Guoqian Jiang, Qian Zhu, Yongqun He
2016 — conf
Risk feature assessment of readmission for diabetes.
BIBM
Qian Zhu, Anirudh Akkati, Pornpoh Hongwattanakul
2015 — conf
Acquisition of diabetes-related biological associations using a motif based network: Preliminary results.
BIBM
Iyanuoluwa Emmanuel Odebode, Aryya Gangopadhyay, Qian Zhu
2015 J jnl
Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing.
BioData Min.
Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu
2015 J jnl
Desiderata for computable representations of electronic health records-driven phenotype algorithms.
J. Am. Medical Informatics Assoc.
Huan Mo, William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Richard C. Kiefer, Qian Zhu, Jie Xu, Enid N. H. Montague, David S. Carrell, Todd Lingren, Frank D. Mentch, Yizhao Ni, Firas H. Wehbe, Peggy L. Peissig, Gerard Tromp, Eric B. Larson, Christopher G. Chute, Jyotishman Pathak, Joshua C. Denny, Peter Speltz, Abel N. Kho, Gail P. Jarvik, Cosmin Adrian Bejan, Marc S. Williams, Kenneth Borthwick, Terrie E. Kitchner, Dan M. Roden, Paul A. Harris
2015 J jnl
EHR based Genetic Testing Knowledge Base (iGTKB) Development.
BMC Medical Informatics Decis. Mak.
Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber
2015 J jnl
Next generation informatics for big data in precision medicine era.
BioData Min.
Yuji Zhang, Qian Zhu, Hongfang Liu
2015 J jnl
Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research.
J. Am. Medical Informatics Assoc.
Jie Xu, Luke V. Rasmussen, Pamela L. Shaw, Guoqian Jiang, Richard C. Kiefer, Huan Mo, Jennifer A. Pacheco, Peter Speltz, Qian Zhu, Joshua C. Denny, Jyotishman Pathak, William K. Thompson, Enid N. H. Montague
2015 J jnl
Toward a complete dataset of drug-drug interaction information from publicly available sources.
J. Biomed. Informatics
Serkan Ayvaz, John R. Horn, Oktie Hassanzadeh, Qian Zhu, Johann Stan, Nicholas P. Tatonetti, Santiago Vilar, Mathias Brochhausen, Matthias Samwald, Majid Rastegar-Mojarad, Michel Dumontier, Richard D. Boyce
2014 — conf
Cancer Based Pharmacogenomics Network for Drug Repurposing.
PAKDD Workshops
Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu
2014 Misc conf
Evaluation of Existing Phenotype Authoring Tools for Clinical Research.
AMIA
Luke V. Rasmussen, Jie Xu, Ruijue Liu, Qian Zhu, Jennifer A. Pacheco, Jyotishman Pathak, William K. Thompson, Joshua C. Denny, Huan Mo, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague
2014 Misc conf
Evaluation of RxNorm for Medication Clinical Decision Support.
AMIA
Robert R. Freimuth, Kelly Wix, Qian Zhu, Mark Siska, Christopher G. Chute
2014 Misc conf
Exploring the Pharmacogenomics Knowledge Base (PharmGKB) for Repositioning Breast Cancer Drugs by Leveraging Web Ontology Language (OWL) and Cheminformatics Approaches.
Pacific Symposium on Biocomputing
Qian Zhu, Cui Tao, Feichen Shen, Christopher G. Chute
2014 — conf
Genetic testing knowledge base (GTKB) towards individualized genetic test recommendation - An experimental study.
BIBM
Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber
2014 — conf
Pharmacological Class Data Representation in the Web Ontology Language (OWL).
ICBO
Qian Zhu, Cui Tao
2014 — conf
Pharmacological class data representation in the Web Ontology Language (OWL).
IEEE BigData
Qian Zhu, Cui Tao
2014 Misc conf
Qualitative evaluation of three phenotype information models to find methotrexate liver injury.
AMIA
Qian Zhu, Huan Mo, Luke V. Rasmussen, Andrew R. Post, Jennifer A. Pacheco, Jie Xu, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague, William K. Thompson, Joshua C. Denny, Jyotishman Pathak
2014 Misc conf
iGenetics: An Individualized Genetic Test Recommendation System Based on EHRs.
AMIA
Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber
2013 J jnl
A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data.
J. Am. Medical Informatics Assoc.
Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Qian Zhu, Deepak K. Sharma, Jyotishman Pathak, Stanley M. Huff, Christopher G. Chute
2013 J jnl
Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL.
J. Biomed. Informatics
Qian Zhu, Robert R. Freimuth, Jyotishman Pathak, Matthew J. Durski, Christopher G. Chute
2013 J jnl
Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: A case study.
J. Biomed. Informatics
Qian Zhu, Robert R. Freimuth, Zonghui Lian, Scott Bauer, Jyotishman Pathak, Cui Tao, Matthew J. Durski, Christopher G. Chute
2013 — conf
Standardized Drug and Pharmacological Class Network Construction.
VDOS+DO@ICBO
Qian Zhu, Guoqian Jiang, Liwei Wang, Christopher G. Chute
2013 — conf
Standardized Drug and Pharmacological Class Network Construction.
MedInfo
Qian Zhu, Guoqian Jiang, Liwei Wang, Christopher G. Chute
2013 Misc conf
Using standardized clinical data modeling and knowledge representation to compute pharmacogenomic data elements.
AMIA
Qian Zhu, Jyotishman Pathak, Robert R. Freimuth, Christopher G. Chute
2012 — conf
A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data.
HISB
Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Jyotishman Pathak, Qian Zhu, Deepak K. Sharma, Stanley M. Huff, Christopher G. Chute
2012 Misc conf
A Standardized Drug and Drug Class Universal Network.
AMIA
Qian Zhu, Guoqian Jiang, Christopher G. Chute
2012 Misc conf
Integrating VA's NDF-RT Drug Terminology with PharmGKB: Preliminary Results.
Pacific Symposium on Biocomputing
Jyotishman Pathak, Laura C. Weiss, Matthew J. Durski, Qian Zhu, Robert R. Freimuth, Christopher G. Chute
2012 J jnl
Profiling structured product labeling with NDF-RT and RxNorm.
J. Biomed. Semant.
Qian Zhu, Guoqian Jiang, Christopher G. Chute
2012 — conf
Training support vector machine through redundant data reduction.
ICIMCS
Xiangjun Shen, Haoxiang Wu, Qian Zhu
2011 J jnl
Semantic Inference using Chemogenomics Data for Drug Discovery
CoRR
Qian Zhu, Yuyin Sun, Sashikiran Challa, Ying Ding, Michael S. Lajiness, David J. Wild
2011 J jnl
Semantic Inference using Chemogenomics Data for Drug Discovery.
BMC Bioinform.
Qian Zhu, Yuyin Sun, Sashikiran Challa, Ying Ding, Michael S. Lajiness, David J. Wild
2010 J jnl
Chem2Bio2RDF: A Linked Open Data Portal for Chemical Biology
CoRR
Bin Chen, David J. Wild, Qian Zhu, Ying Ding, Xiao Dong, Madhuvanthi Sankaranarayanan, Huijun Wang, Yuyin Sun
2010 — conf
Chem2Bio2RDF: A Linked Open Data Portal for Systems Chemical Biology.
Web Intelligence
Bin Chen, Ying Ding, Huijun Wang, David J. Wild, Xiao Dong, Yuyin Sun, Qian Zhu, Madhuvanthi Sankaranarayanan
2010 J jnl
Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data.
BMC Bioinform.
Bin Chen, Xiao Dong, Dazhi Jiao, Huijun Wang, Qian Zhu, Ying Ding, David J. Wild
2010 — conf
Using Web Technologies for Integrative Drug Discovery.
Web Intelligence
Qian Zhu, Sashikiran Challa, Prajakta Purohit, Yuyin Sun, Michael S. Lajiness, David J. Wild, Ying Ding
2010 J jnl
WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications.
J. Cheminformatics
Qian Zhu, Michael S. Lajiness, Ying Ding, David J. Wild
2009 — conf
Semantic Rules on Drug Discovery Data.
ASWC
Sashikiran Challa, David J. Wild, Ying Ding, Qian Zhu
2005 J jnl
Superstructure Searching Algorithm for Generic Reaction Retrieval.
J. Chem. Inf. Model.
Qian Zhu, Jianhua Yao, Shengang Yuan, Feng Li, Haifeng Chen, Wei Cai, Quan Liao