Purvesh Khatri

32 papers B 1C 3Misc 6Journal 19Unranked 3
YearRankTypeTitle / Venue / Authors
2024 — conf
Development of Machine Learning Classifiers for Blood-based Diagnosis and Prognosis of Suspected Acute Infections and Sepsis.
ML4H@NeurIPS
Ljubomir J. Buturovic, Michael B. Mayhew, Roland Lüthy, Kirindi Choi, Uros Midic, Nandita Damaraju, Yehudit Hasin-Brumshtein, Amitesh Pratap, Rhys M. Adams, João F. Henriques, Ambika Srinath, Paul Fleming, Claudia Pereira, Oliver Liesenfeld, Purvesh Khatri, Timothy Sweeney
2024 J jnl
Development of Machine Learning Classifiers for Blood-based Diagnosis and Prognosis of Suspected Acute Infections and Sepsis.
CoRR
Ljubomir J. Buturovic, Michael B. Mayhew, Roland Lüthy, Kirindi Choi, Uros Midic, Nandita Damaraju, Yehudit Hasin-Brumshtein, Amitesh Pratap, Rhys M. Adams, João F. Henriques, Ambika Srinath, Paul Fleming, Claudia Pereira, Oliver Liesenfeld, Purvesh Khatri, Timothy Sweeney
2024 J jnl
Use of a Structured Knowledge Base Enhances Metadata Curation by Large Language Models.
CoRR
Sowmya S. Sundaram, Benjamin Solomon, Avani Khatri, Anisha Laumas, Purvesh Khatri, Mark A. Musen
2022 J jnl
Increasing reproducibility, robustness, and generalizability of biomarker selection from meta-analysis using Bayesian methodology.
PLoS Comput. Biol.
Laurynas Kalesinskas, Sanjana Gupta, Purvesh Khatri
2021 Misc conf
A multi-scale integrated analysis identifies KRT8 as a pan-cancer early biomarker.
PSB
Madeleine Scott, Maneesha Limaye, Steven Schaffert, Robert West, Michael G. Ozawa, Pauline Chu, Viswam S. Nair, Albert C. Koong, Purvesh Khatri
2021 J jnl
Computational drug repositioning of atorvastatin for ulcerative colitis.
J. Am. Medical Informatics Assoc.
Lawrence Bai, Madeleine K. D. Scott, Ethan Steinberg, Laurynas Kalesinskas, Aida Habtezion, Nigam H. Shah, Purvesh Khatri
2021 — conf
Formulating a gene signature for diagnosis of autoimmune and infectious diseases.
BCB
Riya Gupta, Aditya M. Rao, Lara Murphy Jones, Purvesh Khatri
2021 J jnl
SIMON: Open-Source Knowledge Discovery Platform.
Patterns
Adriana Tomic, Ivan Tomic, Levi Waldron, Ludwig Geistlinger, Max Kuhn, Rachel L. Spreng, Lindsay C. Dahora, Kelly E. Seaton, Georgia D. Tomaras, Jennifer Hill, Niharika A. Duggal, Ross D. Pollock, Norman R. Lazarus, Stephen D. R. Harridge, Janet M. Lord, Purvesh Khatri, Andrew J. Pollard, Mark M. Davis
2017 J jnl
Chemical Space Mimicry for Drug Discovery.
J. Chem. Inf. Model.
William Yuan, Dadi Jiang, Dhanya K. Nambiar, Lydia P. Liew, Michael P. Hay, Joshua Bloomstein, Peter Lu, Brandon Turner, Quynh-Thu Le, Robert Tibshirani, Purvesh Khatri, Mark G. Moloney, Albert C. Koong
2017 — conf
Complementing single-cell RNA-seq using bulk transcriptional profiles.
BIBM
Winston A. Haynes, Francesco Vallania, Purvesh Khatri
2017 Misc conf
Empowering Multi-Cohort Gene Expression Analysis to Increase Reproducibility.
PSB
Winston A. Haynes, Francesco Vallania, Charles Liu, Erika Bongen, Aurelie Tomczak, Marta Andres-Terrè, Shane Lofgren, Andrew Tam, Cole A. Deisseroth, Matthew D. Li, Timothy E. Sweeney, Purvesh Khatri
2017 Misc conf
Gene annotation bias impedes biomedical research.
AMIA
Winston A. Haynes, Aurelie Tomczak, Purvesh Khatri
2017 Misc conf
Meta-Analysis of Continuous Phenotypes Identifies a Gene Signature that Correlates with COPD Disease Status.
PSB
Madeleine Scott, Francesco Vallania, Purvesh Khatri
2015 J jnl
The center for expanded data annotation and retrieval.
J. Am. Medical Informatics Assoc.
Mark A. Musen, Carol A. Bean, Kei-Hoi Cheung, Michel Dumontier, Kim A. Durante, Olivier Gevaert, Alejandra N. González-Beltrán, Purvesh Khatri, Steven H. Kleinstein, Martin J. O'Connor, Yannick Pouliot, Philippe Rocca-Serra, Susanna-Assunta Sansone, Jeffrey A. Wiser
2014 Misc conf
Multiplex Meta-Analysis of Medulloblastoma Expression Studies with External Controls.
Pacific Symposium on Biocomputing
Alexander A. Morgan, Matthew D. Li, Achal S. Achrol, Purvesh Khatri, Samuel H. Cheshier
2012 J jnl
Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges.
PLoS Comput. Biol.
Purvesh Khatri, Marina Sirota, Atul J. Butte
2010 J jnl
Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants.
BMC Bioinform.
Alexander A. Morgan, Purvesh Khatri, Richard Hayden Jones, Minnie M. Sarwal, Atul J. Butte
2010 J jnl
Predicting Novel Human Gene Ontology Annotations Using Semantic Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform.
Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici
2009 J jnl
A novel signaling pathway impact analysis.
Bioinform.
Adi L. Tarca, Sorin Draghici, Purvesh Khatri, Sonia S. Hassan, Pooja Mittal, Jung-Sun Kim, Chong Jai Kim, Juan Pedro Kusanovic, Roberto Romero
2008 B conf
Identifying uncertainty regions in Support Vector Machines using geometric margin and convex hulls.
IJCNN
Calin Voichita, Purvesh Khatri, Sorin Draghici
2007 C conf
A System Biology Approach for the Steady-State Analysis of Gene Signaling Networks.
CIARP
Purvesh Khatri, Sorin Draghici, Adi L. Tarca, Sonia S. Hassan, Roberto Romero
2007 J jnl
Onto-Tools: new additions and improvements in 2006.
Nucleic Acids Res.
Purvesh Khatri, Calin Voichita, Khalid Kattan, Nadeem Ansari, Avani Khatri, Constantin Georgescu, Adi L. Tarca, Sorin Draghici
2007 C conf
Semantic Analysis of Genome Annotations using Weighting Schemes.
CIBCB
Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici
2006 J jnl
Babel's tower revisited: a universal resource for cross-referencing across annotation databases.
Bioinform.
Sorin Draghici, Sivakumar Sellamuthu, Purvesh Khatri
2006 J jnl
New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate.
Nucleic Acids Res.
Purvesh Khatri, Valmik Desai, Adi L. Tarca, Sivakumar Sellamuthu, Derek E. Wildman, Roberto Romero, Sorin Draghici
2005 C conf
A Novel Bioinformatics Technique for Predicting Condition-specific Transcription Factor Binding Sites.
CIBCB
Valmik Desai, Purvesh Khatri, Arina Done, Aviva Friedman, Michael A. Tainsky, Sorin Draghici
2005 J jnl
A semantic analysis of the annotations of the human genome.
Bioinform.
Purvesh Khatri, Bogdan Done, Archana Rao, Arina Done, Sorin Draghici
2005 Misc conf
Identification of Genomic Signatures for the Design of Assays for the Detection and Monitoring of Anthrax Threats.
Pacific Symposium on Biocomputing
Sorin Draghici, Purvesh Khatri, Yanhong Liu, Kitty J. Chase, Elizabeth A. Bode, David A. Kulesh, Leonard P. Wasieloski, David A. Norwood, Jaques Reifman
2005 J jnl
Ontological analysis of gene expression data: current tools, limitations, and open problems.
Bioinform.
Purvesh Khatri, Sorin Draghici
2005 J jnl
Recent additions and improvements to the Onto-Tools.
Nucleic Acids Res.
Purvesh Khatri, Sivakumar Sellamuthu, Pooja Malhotra, Kashyap Amin, Arina Done, Sorin Draghici
2004 J jnl
Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments.
Nucleic Acids Res.
Purvesh Khatri, Pratik Bhavsar, Gagandeep Bawa, Sorin Draghici
2003 J jnl
Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate.
Nucleic Acids Res.
Sorin Draghici, Purvesh Khatri, Pratik Bhavsar, Abhik Shah, Stephen A. Krawetz, Michael A. Tainsky