Pu-Feng Du

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
scDIFF: automatic cell type annotation using scATAC-seq data by incorporating bulk-level genomic and epigenomic information in a deep diffusive transformer.
Briefings Bioinform.
Haoyu Wang, Hao Dong, Pu-Feng Du
2025 J jnl
scMUG: deep clustering analysis of single-cell RNA-seq data on multiple gene functional modules.
Briefings Bioinform.
De-Min Liang, Pu-Feng Du
2024 J jnl
SilenceREIN: seeking silencers on anchors of chromatin loops by deep graph neural networks.
Briefings Bioinform.
Jian-Hua Pan, Pu-Feng Du
2024 J jnl
Vislocas: Vision transformers for identifying protein subcellular mis-localization signatures of different cancer subtypes from immunohistochemistry images.
Comput. Biol. Medicine
Jing-Wen Wen, Han-Lin Zhang, Pu-Feng Du
2023 J jnl
PLA-GNN: Computational inference of protein subcellular location alterations under drug treatments with deep graph neural networks.
Comput. Biol. Medicine
Ren-Hua Wang, Tao Luo, Han-Lin Zhang, Pu-Feng Du
2023 J jnl
iEssLnc: quantitative estimation of lncRNA gene essentialities with meta-path-guided random walks on the lncRNA-protein interaction network.
Briefings Bioinform.
Ying-Ying Zhang, De-Min Liang, Pu-Feng Du
2022 J jnl
NPI-RGCNAE: Fast Predicting ncRNA-Protein Interactions Using the Relational Graph Convolutional Network Auto-Encoder.
IEEE J. Biomed. Health Informatics
Han Yu, Zi-Ang Shen, Pu-Feng Du
2021 J jnl
KNIndex: a comprehensive database of physicochemical properties for k-tuple nucleotides.
Briefings Bioinform.
Wen-Ya Zhang, Junhai Xu, Jun Wang, Yuan-Ke Zhou, Wei Chen, Pu-Feng Du
2021 J jnl
NPI-GNN: Predicting ncRNA-protein interactions with deep graph neural networks.
Briefings Bioinform.
Zi-Ang Shen, Tao Luo, Yuan-Ke Zhou, Han Yu, Pu-Feng Du
2021 J jnl
Predicting protein subchloroplast locations: the 10th anniversary.
Frontiers Comput. Sci.
Jian Sun, Pu-Feng Du
2020 J jnl
VisFeature: a stand-alone program for visualizing and analyzing statistical features of biological sequences.
Bioinform.
Jun Wang, Pu-Feng Du, Xin-Yu Xue, Guang-Ping Li, Yuan-Ke Zhou, Wei Zhao, Hao Lin, Wei Chen