Pratul K. Agarwal

20 papers A 3B 2C 1Misc 2Journal 9Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Asymmetric Dynamics Between the Protomers of the σ2 Receptor Homodimer.
J. Chem. Inf. Model.
Manming Xu, Saleh Alyemni, Veniamin A. Borin, Ranabir Majumder, Nathaniel V. Nucci, Thomas M. Keck, Kevin Frankowski, Pratul K. Agarwal, Shozeb Haider
2025 J jnl
Evolutionary Dynamics and Functional Differences in Clinically Relevant Pen β-Lactamases from
J. Chem. Inf. Model.
Jing Gu, Pratul K. Agarwal, Robert A. Bonomo, Shozeb M. Haider
2020 J jnl
Application health monitoring for extreme-scale resiliency using cooperative fault management.
Concurr. Comput. Pract. Exp.
Pratul K. Agarwal, Thomas J. Naughton, Byung H. Park, David E. Bernholdt, Joshua Hursey, Al Geist
2013 J jnl
Performance modeling of microsecond scale biological molecular dynamics simulations on heterogeneous architectures.
Concurr. Comput. Pract. Exp.
Pratul K. Agarwal, Scott S. Hampton, Jeffrey D. Poznanovic, Arvind Ramanathan, Sadaf R. Alam, Paul S. Crozier
2012 Misc conf
Quasi-Anharmonic Analysis Reveals Intermediate States in the Nuclear Co-Activator Receptor Binding Domain Ensemble.
Pacific Symposium on Biocomputing
Virginia M. Burger, Arvind Ramanathan, Andrej J. Savol, Christopher B. Stanley, Pratul K. Agarwal, Chakra S. Chennubhotla
2011 J jnl
QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin.
Bioinform.
Andrej J. Savol, Virginia M. Burger, Pratul K. Agarwal, Arvind Ramanathan, Chakra S. Chennubhotla
2011 — conf
Realization of User Level Fault Tolerant Policy Management through a Holistic Approach for Fault Correlation.
POLICY
Byung H. Park, Thomas J. Naughton, Pratul K. Agarwal, David E. Bernholdt, Al Geist, Jennifer L. Tippens
2010 J jnl
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations.
J. Comput. Biol.
Arvind Ramanathan, Pratul K. Agarwal, Maria G. Kurnikova, Christopher James Langmead
2010 — conf
Energy efficient biomolecular simulations with FPGA-based reconfigurable computing.
Conf. Computing Frontiers
Ananth Nallamuthu, Melissa C. Smith, Scott S. Hampton, Pratul K. Agarwal, Sadaf R. Alam
2010 A conf
Optimal Utilization of Heterogeneous Resources for Biomolecular Simulations.
SC
Scott S. Hampton, Sadaf R. Alam, Paul S. Crozier, Pratul K. Agarwal
2010 — conf
Towards microsecond biological molecular dynamics simulations on hybrid processors.
HPCS
Scott S. Hampton, Pratul K. Agarwal, Sadaf R. Alam, Paul S. Crozier
2009 B conf
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations.
RECOMB
Arvind Ramanathan, Pratul K. Agarwal, Maria G. Kurnikova, Christopher James Langmead
2008 Misc conf
Experimental Evaluation of Molecular Dynamics Simulations on Multi-core Systems.
HiPC
Sadaf R. Alam, Pratul K. Agarwal, Scott S. Hampton, Hong Ong
2008 A conf
Impact of multicores on large-scale molecular dynamics simulations.
IPDPS
Sadaf R. Alam, Pratul K. Agarwal, Scott S. Hampton, Hong Ong, Jeffrey S. Vetter
2008 J jnl
Performance characteristics of biomolecular simulations on high-end systems with multi-core processors.
Parallel Comput.
Sadaf R. Alam, Pratul K. Agarwal, Jeffrey S. Vetter
2007 A conf
On the Path to Enable Multi-scale Biomolecular Simulations on PetaFLOPS Supercomputer with Multi-core Processors.
IPDPS
Sadaf R. Alam, Pratul K. Agarwal
2007 C conf
Performance Evaluation of a Scalable Molecular Dynamics Simulation Framework on a Massively-Parallel System.
BIBE
Sadaf R. Alam, Pratul K. Agarwal, Jeffery A. Kuehn
2007 J jnl
Throughput Improvement of Molecular Dynamics Simulations Using Reconfigurable Computing.
Scalable Comput. Pract. Exp.
Sadaf R. Alam, Pratul K. Agarwal, Jeffrey S. Vetter, Melissa C. Smith
2007 J jnl
Using FPGA Devices to Accelerate Biomolecular Simulations.
Computer
Sadaf R. Alam, Pratul K. Agarwal, Melissa C. Smith, Jeffrey S. Vetter, David Caliga
2006 B conf
Performance characterization of molecular dynamics techniques for biomolecular simulations.
PPoPP
Sadaf R. Alam, Jeffrey S. Vetter, Pratul K. Agarwal, Al Geist