Prashanti Manda

37 papers Misc 1Journal 21Unranked 14

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Automated SNOMED CT Concept Annotation in Clinical Text Using Bi-GRU Neural Networks. ICBRA Ali Noori, Pratik Devkota, Somya D. Mohanty, Prashanti Manda
2025	J	`jnl`	Automated SNOMED CT Concept Annotation in Clinical Text Using Bi-GRU Neural Networks. CoRR Ali Noori, Pratik Devkota, Somya D. Mohanty, Prashanti Manda
2025	J	`jnl`	LLMs in Action: Robust Metrics for Evaluating Automated Ontology Annotation Systems. Inf. Ali Noori, Pratik Devkota, Somya D. Mohanty, Prashanti Manda
2025	—	`conf`	Leveraging Large Language Models and RNNs for Accurate Ontology-Based Text Annotation. BIOSTEC (1) Pratik Devkota, Somya D. Mohanty, Prashanti Manda
2025	J	`jnl`	Optimizing large language models for ontology-based annotation: a study on gene ontology in biomedical texts. BioData Min. Pratik Devkota, Somya D. Mohanty, Prashanti Manda
2025	J	`jnl`	Semantic Analysis of SNOMED CT Concept Co-occurrences in Clinical Documentation using MIMIC-IV. CoRR Ali Noori, Somya D. Mohanty, Prashanti Manda
2023	J	`jnl`	Editorial: AI and data science in drug development and public health: Highlights from the MCBIOS 2022 conference. Frontiers Big Data Ramin Homayouni, Prashanti Manda, Aik Choon Tan, Zhaohui S. Qin
2023	—	`conf`	Ontology-Powered Boosting for Improved Recognition of Ontology Concepts from Biological Literature. BIOINFORMATICS Pratik Devkota, Somya D. Mohanty, Prashanti Manda
2023	—	`conf`	Using Ontology Embeddings With Deep Learning Architectures to Improve Prediction of Ontology Concepts From Literature. ICBO Pratik Devkota, Somya D. Mohanty, Prashanti Manda
2022	J	`jnl`	A Gated Recurrent Unit based architecture for recognizing ontology concepts from biological literature. BioData Min. Pratik Devkota, Somya D. Mohanty, Prashanti Manda
2022	J	`jnl`	Editorial: Unleashing Innovation on Precision Public Health-Highlights From the MCBIOS and MAQC 2021 Joint Conference. Frontiers Artif. Intell. Ramin Homayouni, Huixiao Hong, Prashanti Manda, Bindu Nanduri, Inimary T. Toby
2022	—	`conf`	Knowledge of the Ancestors: Intelligent Ontology-aware Annotation of Biological Literature using Semantic Similarity. ICBO Pratik Devkota, Somya D. Mohanty, Prashanti Manda
2022	J	`jnl`	Machine learning for predicting readmission risk among the frail: Explainable AI for healthcare. Patterns Somya D. Mohanty, Deborah Lekan, Thomas P. McCoy, Marjorie Jenkins, Prashanti Manda
2020	—	`conf`	A multi-modal machine learning approach towards predicting patient readmission. BIBM Somya D. Mohanty, Thomas P. McCoy, Prashanti Manda, Deborah Lekan, Marjorie Jenkins
2020	—	`conf`	Automated ontology-based annotation of scientific literature using deep learning. SBD@SIGMOD Prashanti Manda, Saed SayedAhmed, Somya D. Mohanty
2020	J	`jnl`	Data mining powered by the gene ontology. WIREs Data Mining Knowl. Discov. Prashanti Manda
2019	J	`jnl`	Avoiding "conflicts of interest": A computational approach to scheduling parallel conference tracks and its human evaluation. PeerJ Prepr. Prashanti Manda, Alexander Hahn, Katherine Lamm, Scott Provan, Todd J. Vision
2019	J	`jnl`	Avoiding "conflicts of interest": a computational approach to scheduling parallel conference tracks and its human evaluation. PeerJ Comput. Sci. Prashanti Manda, Alexander Hahn, Katherine Beekman, Todd J. Vision
2019	—	`conf`	Ontology-powered Semantic Similarity of Biological and Biomedical Entities - The Story So Far, and The Road Ahead. BIOINFORMATICS Prashanti Manda
2019	J	`jnl`	Proceedings of the 2018 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. BMC Bioinform. Jonathan D. Wren, Robert J. Doerksen, Inimary T. Toby, Bindu Nanduri, Ramin Homayouni, Prashanti Manda, Shraddha Thakkar
2018	J	`jnl`	Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. Database J. Biol. Databases Curation Wasila M. Dahdul, Prashanti Manda, Hong Cui, James P. Balhoff, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Todd J. Vision, Paula M. Mabee
2018	—	`conf`	Comparison of Natural Language Processing Tools for Automatic Gene Ontology Annotation of Scientific Literature. ICBO Lucas Beasley, Prashanti Manda
2018	J	`jnl`	Comparison of natural language processing tools for automatic gene ontology annotation of scientific literature. PeerJ Prepr. Lucas Beasley, Prashanti Manda
2018	—	`conf`	On the Statistical Sensitivity of Semantic Similarity Metrics. ICBO Prashanti Manda, Todd J. Vision
2018	—	`ch.`	Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology. Application of Semantic Technology in Biodiversity Science Paula M. Mabee, Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Prashanti Manda, Josef C. Uyeda, Todd J. Vision, Monte Westerfield
2018	—	`conf`	Taking a Dive: Experiments in Deep Learning for Automatic Ontology-Based Annotation of Scientific Literature. ICBO Prashanti Manda, Lucas Beasley, Somya D. Mohanty
2017	—	`conf`	Evolution of anatomical concept usage over time: mining 200 years of biodiversity literature. SBD@SIGMOD Prashanti Manda, Todd J. Vision
2017	J	`jnl`	Proceedings of the 2017 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinform. Jonathan D. Wren, Mikhail G. Dozmorov, Inimary T. Toby, Bindu Nanduri, Ramin Homayouni, Prashanti Manda, Shraddha Thakkar
2017	—	`conf`	What's Hot and What's Not? - Exploring Trends in Bioinformatics Literature Using Topic Modeling and Keyword Analysis. ISBRA Alexander Hahn, Somya D. Mohanty, Prashanti Manda
2016	Misc	`conf`	Investigating the Importance of Anatomical Homology for Cross-Species Phenotype Comparisons Using Semantic Similarity. PSB Prashanti Manda, Christopher J. Mungall, James P. Balhoff, Hilmar Lapp, Todd J. Vision
2016	—	`conf`	Measuring the Importance of Annotation Granularity to the Detection of Semantic Similarity Between Phenotype Profiles. ICBO/BioCreative Prashanti Manda, James P. Balhoff, Todd J. Vision
2016	J	`jnl`	The digital revolution in phenotyping. Briefings Bioinform. Anika Oellrich, Nigel Collier, Tudor Groza, Dietrich Rebholz-Schuhmann, Nigam Shah, Olivier Bodenreider, Mary Regina Boland, Ivo I. Georgiev, Hongfang Liu, Kevin M. Livingston, Augustin Luna, Ann-Marie Mallon, Prashanti Manda, Peter N. Robinson, Gabriella Rustici, Michelle Simon, Liqin Wang, Rainer Winnenburg, Michel Dumontier
2015	J	`jnl`	Information Theoretic Interestingness Measures for Cross-Ontology Data Mining in the Mouse Anatomy Ontology and the Gene Ontology. CoRR Prashanti Manda, Fiona M. McCarthy, Bindu Nanduri, Susan M. Bridges
2013	J	`jnl`	Interestingness measures and strategies for mining multi-ontology multi-level association rules from gene ontology annotations for the discovery of new GO relationships. J. Biomed. Informatics Prashanti Manda, Fiona M. McCarthy, Susan M. Bridges
2011	J	`jnl`	AgBase: supporting functional modeling in agricultural organisms. Nucleic Acids Res. Fiona M. McCarthy, Cathy R. Gresham, Teresia J. Buza, Philippe Chouvarine, Lakshmi R. Pillai, Ranjit Kumar, Seval Ozkan, Hui Wang, Prashanti Manda, Tony Arick, Susan M. Bridges, Shane C. Burgess
2010	J	`jnl`	GOModeler- A tool for hypothesis-testing of functional genomics datasets. BMC Bioinform. Prashanti Manda, McKinley G. Freeman, Susan M. Bridges, T. J. Jankun-Kelly, Bindu Nanduri, Fiona M. McCarthy, Shane C. Burgess
2009	J	`jnl`	Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data. BMC Bioinform. Bart H. J. van den Berg, Chamali Thanthiriwatte, Prashanti Manda, Susan M. Bridges