Prakash M. Nadkarni

67 papers B 1Misc 13Journal 53

Year	Rank	Type	Title / Venue / Authors
2014	J	`jnl`	Brief communication: The Greater Plains Collaborative: a PCORnet Clinical Research Data Network. J. Am. Medical Informatics Assoc. Lemuel R. Waitman, Lauren S. Aaronson, Prakash M. Nadkarni, Daniel W. Connolly, James R. Campbell
2013	J	`jnl`	Natural language processing: algorithms and tools to extract computable information from EHRs and from the biomedical literature. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado, Prakash M. Nadkarni, Kevin B. Johnson
2012	J	`jnl`	An eUtils toolset and its use for creating a pipeline to link genomics and proteomics analyses to domain-specific biomedical literature. J. Clin. Bioinform. Prakash M. Nadkarni, Chirag Parikh
2012	J	`jnl`	Requirements for guidelines systems: implementation challenges and lessons from existing software-engineering efforts. BMC Medical Informatics Decis. Mak. Hemant Shah, Raymond D. Allard, Robert Enberg, Ganesh Krishnan, Patricia Williams, Prakash M. Nadkarni
2011	J	`jnl`	Data standards for clinical research data collection forms: current status and challenges. J. Am. Medical Informatics Assoc. Rachel L. Richesson, Prakash M. Nadkarni
2011	B	`conf`	Interoperability and Integration Considerations for a Process-Oriented Clinical Decision Support System. SERVICES Hemant Shah, Ganesh Krishnan, Patricia Williams, Arthur Vogler, Raymond D. Allard, Prakash M. Nadkarni
2011	J	`jnl`	Leveraging a clinical research information system to assist biospecimen data and workflow management: a hybrid approach. J. Clin. Bioinform. Prakash M. Nadkarni, Rowena Kemp, Chirag Parikh
2011	J	`jnl`	Natural language processing: an introduction. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni, Lucila Ohno-Machado, Wendy Webber Chapman
2011	J	`jnl`	Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. J. Am. Medical Informatics Assoc. Wendy Webber Chapman, Prakash M. Nadkarni, Lynette Hirschman, Leonard W. D'Avolio, Guergana K. Savova, Özlem Uzuner
2011	J	`jnl`	Web-browser encryption of personal health information. BMC Medical Informatics Decis. Mak. Richard Morse, Prakash M. Nadkarni, David A. Schoenfeld, Dianne M. Finkelstein
2010	J	`jnl`	Determining correspondences between high-frequency MedDRA concepts and SNOMED: a case study. BMC Medical Informatics Decis. Mak. Prakash M. Nadkarni, Jonathan D. Darer
2010	J	`jnl`	Drug safety surveillance using de-identified EMR and claims data: issues and challenges. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni
2010	J	`jnl`	Implementing description-logic rules for SNOMED-CT attributes through a table-driven approach. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni, Luis N. Marenco
2010	J	`jnl`	Migrating existing clinical content from ICD-9 to SNOMED. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni, Jonathan A. Darer
2009	J	`jnl`	Model Formulation: Automated Database Mediation Using Ontological Metadata Mappings. J. Am. Medical Informatics Assoc. Luis N. Marenco, Rixin Wang, Prakash M. Nadkarni
2007	J	`jnl`	Guidelines for the effective use of entity-attribute-value modeling for biomedical databases. Int. J. Medical Informatics Valentin Dinu, Prakash M. Nadkarni
2007	J	`jnl`	SenseLab: new developments in disseminating neuroscience information. Briefings Bioinform. Chiquito J. Crasto, Luis N. Marenco, Nian Liu, Thomas M. Morse, Kei-Hoi Cheung, Peter C. Lai, Gautam Bahl, Peter Masiar, Hugo Y. K. Lam, Ernest Lim, Huajun Chen, Prakash M. Nadkarni, Michele Migliore, Perry L. Miller, Gordon M. Shepherd
2007	J	`jnl`	Service-oriented Architecture in Medical Software: Promises and Perils. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni, Randolph A. Miller
2006	J	`jnl`	Pivoting approaches for bulk extraction of Entity-Attribute-Value data. Comput. Methods Programs Biomed. Valentin Dinu, Prakash M. Nadkarni, Cynthia Brandt
2005	Misc	`conf`	Automating Identification of Adverse Events Related to Abnormal Lab Results Using Standard Vocabularies. AMIA Cynthia Brandt, Charles Lu, Prakash M. Nadkarni
2005	Misc	`conf`	Informatics Tools to Improve Clinical Research. AMIA Stephanie Argraves, Cynthia Brandt, Roy Money, Prakash M. Nadkarni
2005	Misc	`conf`	Metadata Driven Generation of Reports for Clinical Studies. AMIA Kexin Sun, Prakash M. Nadkarni, Cynthia Brandt
2005	J	`jnl`	Metadata-driven Delphi rating on the Internet. Comput. Methods Programs Biomed. Aniruddha M. Deshpande, Richard N. Shiffman, Prakash M. Nadkarni
2005	J	`jnl`	VitaPad: visualization tools for the analysis of pathway data. Bioinform. Matthew Holford, Naixin Li, Prakash M. Nadkarni, Hongyu Zhao
2004	J	`jnl`	Application of Information Technology: Managing Complex Change in Clinical Study Metadata. J. Am. Medical Informatics Assoc. Cynthia Brandt, Rohit Gadagkar, Cesar Rodriguez, Prakash M. Nadkarni
2004	J	`jnl`	Evolving standards for clinical content in biomedicine: overview and lessons. Int. J. Serv. Stand. Prakash M. Nadkarni
2004	J	`jnl`	Model Formulation: QIS: A Framework for Biomedical Database Federation. J. Am. Medical Informatics Assoc. Luis N. Marenco, Tzuu-Yi Wang, Gordon M. Shepherd, Perry L. Miller, Prakash M. Nadkarni
2003	J	`jnl`	Application of Information Technology: Achieving Evolvable Web-Database Bioscience Applications Using the EAV/CR Framework: Recent Advances. J. Am. Medical Informatics Assoc. Luis N. Marenco, Nicholas P. Tosches, Chiquito J. Crasto, Gordon M. Shepherd, Perry L. Miller, Prakash M. Nadkarni
2003	Misc	`conf`	Creating Knowledgebases to Text-Mine PUBMED Articles Using Clustering Techniques. AMIA Chiquito J. Crasto, Thomas M. Morse, Michele Migliore, Prakash M. Nadkarni, Michael L. Hines, Douglas E. Brash, Perry L. Miller, Gordon M. Shepherd
2003	J	`jnl`	Model Formulation: Integrating Query of Relational and Textual Data in Clinical Databases: A Case Study. J. Am. Medical Informatics Assoc. John M. Fisk, Pradeep Mutalik, Forrest W. Levin, Joseph Erdos, Caroline Taylor, Prakash M. Nadkarni
2003	J	`jnl`	Temporal query of attribute-value patient data: utilizing the constraints of clinical studies. Int. J. Medical Informatics Aniruddha M. Deshpande, Cynthia Brandt, Prakash M. Nadkarni
2003	J	`jnl`	Text mining neuroscience journal articles to populate neuroscience databases. Neuroinformatics Chiquito J. Crasto, Luis N. Marenco, Michele Migliore, Buqing Mao, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
2003	Misc	`conf`	TrialDB: A Web-based Clinical Study Data Management System AMIA 2003 Open Source Expo. AMIA Cynthia Brandt, Aniruddha M. Deshpande, Charles Lu, Gowri Ananth, Kexin Sun, Rohit Gadagkar, Richard Morse, Cesar Rodriguez, Perry L. Miller, Prakash M. Nadkarni
2002	J	`jnl`	Application of Information Technology: Metadata-driven Ad Hoc Query of Patient Data: Meeting the Needs of Clinical Studies. J. Am. Medical Informatics Assoc. Aniruddha M. Deshpande, Cynthia Brandt, Prakash M. Nadkarni
2002	J	`jnl`	Metadata-driven creation of data marts from an EAV-modeled clinical research database. Int. J. Medical Informatics Cynthia Brandt, Richard Morse, Keri Matthews, Kexin Sun, Aniruddha M. Deshpande, Rohit Gadagkar, Dorothy B. Cohen, Perry L. Miller, Prakash M. Nadkarni
2001	Misc	`conf`	A Pilot Approach to Automated and Efficient Transfer of Neuroscience Data from Journal Articles to Searchable Databases. AMIA Chiquito J. Crasto, Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
2001	Misc	`conf`	Easing the transition between attribute-value databases and conventional databases for scientific data. AMIA Prakash M. Nadkarni, Luis N. Marenco
2001	Misc	`conf`	Generation of pedigree diagrams for web display using scalable vector graphics from a clinical trials database. AMIA Sanjay K. Fernando, Cynthia Brandt, Prakash M. Nadkarni
2001	Misc	`conf`	Metadata-driven Ad Hoc Query of Clinical Studies Data. AMIA Aniruddha M. Deshpande, Prakash M. Nadkarni
2001	J	`jnl`	Research Paper: UMLS Concept Indexing for Production Databases: A Feasibility Study. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni, Roland Chen, Cynthia Brandt
2001	J	`jnl`	Research Paper: Use of General-purpose Negation Detection to Augment Concept Indexing of Medical Documents: A Quantitative Study Using the UMLS. J. Am. Medical Informatics Assoc. Pradeep Mutalik, Aniruddha M. Deshpande, Prakash M. Nadkarni
2001	J	`jnl`	Synthesis of Research: Integration of Multidisciplinary Sensory Data: A Pilot Model of the Human Brain Project Approach. J. Am. Medical Informatics Assoc. Perry L. Miller, Prakash M. Nadkarni, Michael S. Singer, Luis N. Marenco, Michael L. Hines, Gordon M. Shepherd
2001	J	`jnl`	Web-based UMLS concept retrieval by automatic text scanning: a comparison of two methods. Comput. Methods Programs Biomed. Cynthia Brandt, Prakash M. Nadkarni
2000	J	`jnl`	Application of Information Technology: WebEAV: Automatic Metadata-driven Generation of Web Interfaces to Entity-Attribute-Value Databases. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni, Cynthia Brandt, Luis N. Marenco
2000	J	`jnl`	Integration of a hematopoietic progenitor cell program using the ACT/DB database system. Comput. Methods Programs Biomed. Peter L. Perrotta, Prakash M. Nadkarni
2000	J	`jnl`	Olfactory Receptor Database: a sensory chemoreceptor resource. Nucleic Acids Res. Emmanouil Skoufos, Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
2000	J	`jnl`	Research Paper: Exploring Performance Issues for a Clinical Database Organized Using an Entity-Attribute-Value Representation. J. Am. Medical Informatics Assoc. Roland Chen, Prakash M. Nadkarni, Luis N. Marenco, Forrest W. Levin, Joseph Erdos, Perry L. Miller
2000	J	`jnl`	Research Paper: Exploring the Degree of Concordance of Coded and Textual Data in Answering Clinical Queries from a Clinical Data Repository. J. Am. Medical Informatics Assoc. H. David Stein, Prakash M. Nadkarni, Joseph Erdos, Perry L. Miller
2000	Misc	`conf`	The SenseLab Database: System Design Towards Interoperability. AMIA Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
1999	J	`jnl`	Application of Information Technology: Organization of Heterogeneous Scientific Data Using the EAV/CR Representation. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni, Luis N. Marenco, Roland Chen, Emmanouil Skoufos, Gordon M. Shepherd, Perry L. Miller
1999	Misc	`conf`	Neuronal database integration: the Senselab EAV data model. AMIA Luis N. Marenco, Prakash M. Nadkarni, Emmanouil Skoufos, Gordon M. Shepherd, Perry L. Miller
1999	J	`jnl`	Olfactory Receptor Database: a database of the largest eukaryotic gene family. Nucleic Acids Res. Emmanouil Skoufos, Matthew D. Healy, Michael S. Singer, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
1998	J	`jnl`	A metadata approach to query interoperation between molecular biology databases. Bioinform. Kei-Hoi Cheung, Prakash M. Nadkarni, Dong-Guk Shin
1998	Misc	`conf`	ACT/DB: A Clinical Trials Database Being Refined on a Pilot Basis at Two Medical Centers. AMIA Cynthia Brandt, Prakash M. Nadkarni, Lee Schacter, Daniel Zelterman, Yuli Li, John M. Fisk, Edward K. Shultz, Perry L. Miller
1998	J	`jnl`	Application of Information Technology: Data Extraction and Ad Hoc Query of an Entity - Attribute - Value Database. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni
1998	J	`jnl`	Application of Technology: Managing Attribute-Value Clinical Trials Data Using the ACT/DB Client-Server Database System. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni, Cynthia Brandt, Sandra J. Frawley, Frederick G. Sayward, Robin Einbinder, Daniel Zelterman, Lee Schacter, Perry L. Miller
1998	Misc	`conf`	Automatic query mapping among genomic databases: a pilot exploration. AMIA Kei-Hoi Cheung, Prakash M. Nadkarni, Perry L. Miller, Dong-Guk Shin
1998	J	`jnl`	Mapmerge: merge genomic maps. Bioinform. Prakash M. Nadkarni
1997	J	`jnl`	Mapdiff: determining differences between two genomic maps. Comput. Appl. Biosci. Prakash M. Nadkarni
1996	J	`jnl`	Application of Technology: ModelDB: An Environment for Running and Storing Computational Models and Their Results Applied to Neuroscience. J. Am. Medical Informatics Assoc. Bret E. Peterson, Matthew D. Healy, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
1996	J	`jnl`	DNA Workbench: A Database Package to Manage Regional Physical Mapping. J. Comput. Biol. Prakash M. Nadkarni, Kei-Hoi Cheung, C. Castiglione, Perry L. Miller, Kenneth K. Kidd
1995	J	`jnl`	Application of Technology: Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12. J. Am. Medical Informatics Assoc. Perry L. Miller, Prakash M. Nadkarni, Kenneth K. Kidd, Kei-Hoi Cheung, David C. Ward, Amy Banks, Patricia Bray-Ward, Lisa Cupelli, Valerie Herdman, Ivonne Marondel, Kate Montcomery, Beatrice Renault, Sunc-Joo Yoon, Kenneth S. Krauter, Raju Kucherlapati
1994	J	`jnl`	A modification of the ALIGN program to assist visual interpretation of mutated sequences. Comput. Appl. Biosci. Prakash M. Nadkarni, Stephen T. Reeders, Jing Zhou
1992	J	`jnl`	Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison. Comput. Appl. Biosci. Perry L. Miller, Prakash M. Nadkarni, William R. Pearson
1992	J	`jnl`	Harnessing networked workstations as a powerful parallel computer: a general paradigm illustrated using three programs for genetic linkage analysis. Comput. Appl. Biosci. Perry L. Miller, Prakash M. Nadkarni, P. A. Bercovitz
1992	J	`jnl`	Parallel Computation for Medicine and Biology: Applications of Linda At Yale University. Int. J. High Perform. Comput. Appl. Dean F. Sittig, Mark A. Shifman, Prakash M. Nadkarni, Perry L. Miller
1991	J	`jnl`	Parallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithm. Comput. Appl. Biosci. Perry L. Miller, Prakash M. Nadkarni, N. M. Carriero