Prakash Adekkanattu

29 papers Misc 13Journal 15Unranked 1

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Extracting social support and social isolation information from clinical psychiatry notes: comparing a rule-based natural language processing system and a large language model. J. Am. Medical Informatics Assoc. Braja Gopal Patra, Lauren A. Lepow, Praneet Kasi Reddy Jagadeesh Kumar, Veer Vekaria, Mohit Manoj Sharma, Prakash Adekkanattu, Brian Fennessy, Gavin Hynes, Isotta Landi, Jorge A. Sanchez-Ruiz, Euijung Ryu, Joanna M. Biernacka, Girish N. Nadkarni, Ardesheer Talati, Myrna Weissman, Mark Olfson, J. John Mann, Yiye Zhang, Alexander W. Charney, Jyotishman Pathak
2024	J	`jnl`	Deep learning for identifying personal and family history of suicidal thoughts and behaviors from EHRs. npj Digit. Medicine Prakash Adekkanattu, Al'ona Furmanchuk, Yonghui Wu, Aman Pathak, Braja Gopal Patra, Sarah Bost, Destinee Morrow, Grace Hsin-Min Wang, Yuyang Yang, Noah James Forrest, Yuan Luo, Theresa L. Walunas, Wei-Hsuan Lo-Ciganic, Walid Gelad, Jiang Bian, Yuhua Bao, Mark G. Weiner, David W. Oslin, Jyotishman Pathak
2024	J	`jnl`	Extracting Social Support and Social Isolation Information from Clinical Psychiatry Notes: Comparing a Rule-based NLP System and a Large Language Model. CoRR Braja Gopal Patra, Lauren A. Lepow, Praneet Kasi Reddy Jagadeesh Kumar, Veer Vekaria, Mohit Manoj Sharma, Prakash Adekkanattu, Brian Fennessy, Gavin Hynes, Isotta Landi, Jorge A. Sanchez-Ruiz, Euijung Ryu, Joanna M. Biernacka, Girish N. Nadkarni, Ardesheer Talati, Myrna Weissman, Mark Olfson, J. John Mann, Alexander W. Charney, Jyotishman Pathak
2024	J	`jnl`	Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias. J. Biomed. Informatics Zehao Yu, Cheng Peng, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2023	J	`jnl`	AD-BERT: Using pre-trained language model to predict the progression from mild cognitive impairment to Alzheimer's disease. J. Biomed. Informatics Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Yikuan Li, Prakash Adekkanattu, Jennifer A. Pacheco, Borna Bonakdarpour, Robert Vassar, Li Shen, Guoqian Jiang, Fei Wang, Jyotishman Pathak, Yuan Luo
2022	J	`jnl`	AD-BERT: Using Pre-trained contextualized embeddings to Predict the Progression from Mild Cognitive Impairment to Alzheimer's Disease. CoRR Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Yikuan Li, Prakash Adekkanattu, Jennifer A. Pacheco, Borna Bonakdarpour, Robert Vassar, Guoqian Jiang, Fei Wang, Jyotishman Pathak, Yuan Luo
2022	J	`jnl`	Design and validation of a FHIR-based EHR-driven phenotyping toolbox. J. Am. Medical Informatics Assoc. Pascal S. Brandt, Jennifer A. Pacheco, Prakash Adekkanattu, Evan Sholle, Sajjad Abedian, Daniel J. Stone, David Knaack, Jie Xu, Zhenxing Xu, Yifan Peng, Natalie C. Benda, Fei Wang, Yuan Luo, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen
2022	J	`jnl`	SODA: A Natural Language Processing Package to Extract Social Determinants of Health for Cancer Studies. CoRR Zehao Yu, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2021	Misc	`conf`	A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models. AMIA Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2021	J	`jnl`	A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models. CoRR Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2021	Misc	`conf`	Extracting Social Isolation Information From Psychiatric Notes in the Electronic Health Records. AMIA Lauren A. Lepow, Braja Gopal Patra, Isotta Landi, Prakash Adekkanattu, Jyotishman Pathak, Mark Olfson, J. John Mann, Euijung Ryu, Joanna M. Biernacka, Girish N. Nadkarni, Priya Wickramaratne, Myrna Weissman, Benjamin S. Glicksberg, Alexander Charney
2021	J	`jnl`	Extracting social determinants of health from electronic health records using natural language processing: a systematic review. J. Am. Medical Informatics Assoc. Braja Gopal Patra, Mohit Manoj Sharma, Veer Vekaria, Prakash Adekkanattu, Olga V. Patterson, Benjamin S. Glicksberg, Lauren A. Lepow, Euijung Ryu, Joanna M. Biernacka, Al'ona Furmanchuk, Thomas J. George, William R. Hogan, Yonghui Wu, Xi Yang, Jiang Bian, Myrna Weissman, Priya Wickramaratne, J. John Mann, Mark Olfson, Thomas R. Campion Jr., Mark G. Weiner, Jyotishman Pathak
2021	Misc	`conf`	FHIRTime: Standardizing Temporal Patterns Identified from Clinical Narratives Using HL7 FHIR. AMIA Daniel J. Stone, Sijia Liu, Yuan Luo, Andrew Wen, Nansu Zong, Luke V. Rasmussen, Prakash Adekkanattu, Pascal S. Brandt, Jennifer A. Pacheco, Fei Wang, Cui Tao, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang
2021	Misc	`conf`	Multi-site Evaluation of Longitudinal Changes in Ejection Fraction in Heart Failure Patients Through Data-driven Phenotyping. AMIA Prakash Adekkanattu, Jennifer A. Pacheco, Joseph Kabariti, Daniel J. Stone, Yue Yu, Parag Goyal, Faraz S. Ahmad, Guoqian Jiang, Yuan Luo, Luke V. Rasmussen, Pascal S. Brandt, Zhenxing Xu, Jie Xu, Fei Wang, Natalie C. Benda, Thomas R. Campion Jr., Jyotishman Pathak
2021	Misc	`conf`	On Constraints and Considerations for Extending Support for Natural Language Processing-Based FHIR Resource Generation. AMIA Andrew Wen, Luke V. Rasmussen, Daniel J. Stone, Sijia Liu, Prakash Adekkanattu, Pascal S. Brandt, Jennifer A. Pacheco, Yuan Luo, Fei Wang, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang
2021	Misc	`conf`	Supporting EHR-based Cohort Discovery Through User-centered Design: Results of an Early Formative Usability Study. AMIA Natalie C. Benda, Pascal S. Brandt, Jessica S. Ancker, Jennifer A. Pacheco, Prakash Adekkanattu, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen
2020	Misc	`conf`	Feasibility of Cross-Platform EHR-Driven Phenotyping Using Clinical Quality Language. AMIA Pascal S. Brandt, Richard C. Kiefer, Jennifer A. Pacheco, Prakash Adekkanattu, Evan Sholle, Faraz S. Ahmad, Jie Xu, Zhenxing Xu, Jessica S. Ancker, Fei Wang, Yuan Luo, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen
2020	Misc	`conf`	Identification of Alzheimer's Disease Subtypes from Electronic Health Records Using a Data-Driven Approach. AMIA Jie Xu, Fei Wang, Zhenxing Xu, Prakash Adekkanattu, Pascal S. Brandt, Guoqian Jiang, Richard C. Kiefer, Yuan Luo, Chengsheng Mao, Jennifer A. Pacheco, Luke V. Rasmussen, Yiye Zhang, Richard Isaacson, Jyotishman Pathak
2020	J	`jnl`	Identifying sub-phenotypes of acute kidney injury using structured and unstructured electronic health record data with memory networks. J. Biomed. Informatics Zhenxing Xu, Jingyuan Chou, Xi Sheryl Zhang, Yuan Luo, Tamara Isakova, Prakash Adekkanattu, Jessica S. Ancker, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Luke V. Rasmussen, Jyotishman Pathak, Fei Wang
2020	Misc	`conf`	Weak Supervision to Classify Unstructured Clinical Text for Current Suicidal Ideation. AMIA Marika M. Cusick, Prakash Adekkanattu, Thomas R. Campion Jr., Evan Sholle, Annie C. Myers, George Alexopoulos, Jyotishman Pathak
2019	Misc	`conf`	Automated Information Extraction to Support Response Assessment in Myeloproliferative Neoplasms. AMIA Evan Sholle, Spencer Krichevsky, Sajjad Abedian, Prakash Adekkanattu, Diana Jaber, Niamh Savage, Joseph Scandura, Thomas R. Campion Jr.
2019	Misc	`conf`	Considerations for Improving the Portability of Electronic Health Record-Based Phenotype Algorithms. AMIA Luke V. Rasmussen, Pascal S. Brandt, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Prakash Adekkanattu, Jessica S. Ancker, Fei Wang, Zhenxing Xu, Jyotishman Pathak, Yuan Luo
2019	J	`jnl`	Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries. J. Biomed. Informatics Na Hong, Andrew Wen, Daniel J. Stone, Shintaro Tsuji, Paul R. Kingsbury, Luke V. Rasmussen, Jennifer A. Pacheco, Prakash Adekkanattu, Fei Wang, Yuan Luo, Jyotishman Pathak, Hongfang Liu, Guoqian Jiang
2019	Misc	`conf`	Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. AMIA Prakash Adekkanattu, Guoqian Jiang, Yuan Luo, Paul R. Kingsbury, Zhenxing Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Richard C. Kiefer, Daniel J. Stone, Pascal S. Brandt, Liang Yao, Yizhen Zhong, Yu Deng, Fei Wang, Jessica S. Ancker, Thomas R. Campion Jr., Jyotishman Pathak
2019	J	`jnl`	Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. CoRR Prakash Adekkanattu, Guoqian Jiang, Yuan Luo, Paul R. Kingsbury, Zhenxing Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Richard C. Kiefer, Daniel J. Stone, Pascal S. Brandt, Liang Yao, Yizhen Zhong, Yu Deng, Fei Wang, Jessica S. Ancker, Thomas R. Campion Jr., Jyotishman Pathak
2019	J	`jnl`	Identification of Predictive Sub-Phenotypes of Acute Kidney Injury using Structured and Unstructured Electronic Health Record Data with Memory Networks. CoRR Zhenxing Xu, Jingyuan Chou, Xi Sheryl Zhang, Yuan Luo, Tamara Isakova, Prakash Adekkanattu, Jessica S. Ancker, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Luke V. Rasmussen, Jyotishman Pathak, Fei Wang
2019	—	`conf`	Stratified Mortality Prediction of Patients with Acute Kidney Injury in Critical Care. MedInfo Zhenxing Xu, Yuan Luo, Prakash Adekkanattu, Jessica S. Ancker, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Luke V. Rasmussen, Jyotishman Pathak, Fei Wang
2019	J	`jnl`	Underserved populations with missing race ethnicity data differ significantly from those with structured race/ethnicity documentation. J. Am. Medical Informatics Assoc. Evan Sholle, Laura C. Pinheiro, Prakash Adekkanattu, Marcos Davila, Stephen B. Johnson, Jyotishman Pathak, Sanjai Sinha, Cassidie Li, Stasi A. Lubansky, Monika M. Safford, Thomas R. Campion Jr.
2018	Misc	`conf`	Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes. AMIA Prakash Adekkanattu, Evan Sholle, Joseph J. DeFerio, Jyotishman Pathak, Stephen B. Johnson, Thomas R. Campion Jr.