Prabhakar Chalise

11 papers Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
micRoclean: an R package for decontaminating low-biomass 16S-rRNA microbiome data.
Frontiers Bioinform.
Rachel Griffard-Smith, Emily Schueddig, Diane E. Mahoney, Prabhakar Chalise, Devin C. Koestler, Dong Pei
2023 J jnl
Nested cross-validation with ensemble feature selection and classification model for high-dimensional biological data.
Commun. Stat. Simul. Comput.
Yi Zhong, Prabhakar Chalise, Jianghua He
2022 J jnl
Assessing equivalent and inverse change in genes between diverse experiments.
Frontiers Bioinform.
Lisa Neums, Devin C. Koestler, Qing Xia, Jinxiang Hu, Shachi Patel, Shelby Bell-Glenn, Dong Pei, Bo Zhang, Samuel Boyd, Prabhakar Chalise, Jeffrey A. Thompson
2022 J jnl
Integration of differential expression and network structure for 'omics data analysis.
Comput. Biol. Medicine
Yonghui Ni, Jianghua He, Prabhakar Chalise
2022 J jnl
Letter to the Editor: on the stability and internal consistency of component-wise sparse mixture regression-based clustering.
Briefings Bioinform.
Bo Zhang, Jianghua He, Jinxiang Hu, Devin C. Koestler, Prabhakar Chalise
2020 J jnl
Network-based integrative clustering of multiple types of genomic data using non-negative matrix factorization.
Comput. Biol. Medicine
Prabhakar Chalise, Yonghui Ni, Brooke L. Fridley
2016 J jnl
An ensemble-based Cox proportional hazards regression framework for predicting survival in metastatic castration-resistant prostate cancer (mCRPC) patients.
F1000Research
Richard Meier, Stefan Graw, Joseph Usset, Rama Raghavan, Junqiang Dai, Prabhakar Chalise, Shellie Ellis, Brooke L. Fridley, Devin C. Koestler
2016 J jnl
InterSIM: Simulation tool for multiple integrative 'omic datasets'.
Comput. Methods Programs Biomed.
Prabhakar Chalise, Rama Raghavan, Brooke L. Fridley
2013 J jnl
Performance and Prediction for Varying Survival Time Scales.
Commun. Stat. Simul. Comput.
Prabhakar Chalise, Eric Chicken, Daniel McGee
2012 — conf
Comparison of Methods for Meta-dimensional Data Analysis Using in Silico and Biological Data Sets.
EvoBIO
Emily Rose Holzinger, Scott M. Dudek, Alex T. Frase, Brooke L. Fridley, Prabhakar Chalise, Marylyn D. Ritchie
2012 J jnl
Comparison of penalty functions for sparse canonical correlation analysis.
Comput. Stat. Data Anal.
Prabhakar Chalise, Brooke L. Fridley