Po-Ting Lai

49 papers Misc 2Journal 42Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
Enhancing Biomedical Relation Extraction with Directionality.
CoRR
Po-Ting Lai, Chih-Hsuan Wei, Shubo Tian, Robert Leaman, Zhiyong Lu
2025 J jnl
Enhancing biomedical relation extraction with directionality.
Bioinform.
Po-Ting Lai, Chih-Hsuan Wei, Shubo Tian, Robert Leaman, Zhiyong Lu
2024 J jnl
Demystifying Large Language Models for Medicine: A Primer.
CoRR
Qiao Jin, Nicholas Wan, Robert Leaman, Shubo Tian, Zhizheng Wang, Yifan Yang, Zifeng Wang, Guangzhi Xiong, Po-Ting Lai, Qingqing Zhu, Benjamin Hou, Maame Sarfo-Gyamfi, Gongbo Zhang, Aidan Gilson, Balu Bhasuran, Zhe He, Aidong Zhang, Jimeng Sun, Chunhua Weng, Ronald M. Summers, Qingyu Chen, Yifan Peng, Zhiyong Lu
2024 J jnl
EnzChemRED, a rich enzyme chemistry relation extraction dataset.
CoRR
Po-Ting Lai, Elisabeth Coudert, Lucila Aimo, Kristian B. Axelsen, Lionel Breuza, Edouard De Castro, Marc Feuermann, Anne Morgat, Lucille Pourcel, Ivo Pedruzzi, Sylvain Poux, Nicole Redaschi, Catherine Rivoire, Anastasia Sveshnikova, Chih-Hsuan Wei, Robert Leaman, Ling Luo, Zhiyong Lu, Alan J. Bridge
2024 J jnl
GeneAgent: Self-verification Language Agent for Gene Set Knowledge Discovery using Domain Databases.
CoRR
Zhizheng Wang, Qiao Jin, Chih-Hsuan Wei, Shubo Tian, Po-Ting Lai, Qingqing Zhu, Chi-Ping Day, Christina Ross, Zhiyong Lu
2024 J jnl
Opportunities and challenges for ChatGPT and large language models in biomedicine and health.
Briefings Bioinform.
Shubo Tian, Qiao Jin, Lana Yeganova, Po-Ting Lai, Qingqing Zhu, Xiuying Chen, Yifan Yang, Qingyu Chen, Won Kim, Donald C. Comeau, Rezarta Islamaj, Aadit Kapoor, Xin Gao, Zhiyong Lu
2024 J jnl
PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge.
CoRR
Chih-Hsuan Wei, Alexis Allot, Po-Ting Lai, Robert Leaman, Shubo Tian, Ling Luo, Qiao Jin, Zhizheng Wang, Qingyu Chen, Zhiyong Lu
2024 J jnl
The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop.
Database J. Biol. Databases Curation
Rezarta Islamaj, Chih-Hsuan Wei, Po-Ting Lai, Ling Luo, Cathleen Coss, Preeti Gokal Kochar, Nicholas Miliaras, Oleg Rodionov, Keiko Sekiya, Dorothy Trinh, Deborah Whitman, Zhiyong Lu
2024 J jnl
The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII.
Database J. Biol. Databases Curation
Rezarta Islamaj, Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Tiago Melo Almeida, Richard A. A. Jonker, Sofia I. R. Conceição, Diana F. Sousa, Cong-Phuoc Phan, Jung-Hsien Chiang, Jiru Li, Dinghao Pan, Wilailack Meesawad, Richard Tzong-Han Tsai, M. Janina Sarol, Gibong Hong, Airat Valiev, Elena Tutubalina, Shao-Man Lee, Yi-Yu Hsu, Mingjie Li, Karin Verspoor, Zhiyong Lu
2023 J jnl
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning.
Bioinform.
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu
2023 J jnl
BioREx: Improving Biomedical Relation Extraction by Leveraging Heterogeneous Datasets.
CoRR
Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu
2023 J jnl
BioREx: Improving biomedical relation extraction by leveraging heterogeneous datasets.
J. Biomed. Informatics
Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu
2023 J jnl
GNorm2: an improved gene name recognition and normalization system.
Bioinform.
Chih-Hsuan Wei, Ling Luo, Rezarta Islamaj, Po-Ting Lai, Zhiyong Lu
2023 J jnl
Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health.
CoRR
Shubo Tian, Qiao Jin, Lana Yeganova, Po-Ting Lai, Qingqing Zhu, Xiuying Chen, Yifan Yang, Qingyu Chen, Won Kim, Donald C. Comeau, Rezarta Islamaj, Aadit Kapoor, Xin Gao, Zhiyong Lu
2022 J jnl
A sequence labeling framework for extracting drug-protein relations from biomedical literature.
Database J. Biol. Databases Curation
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Zhiyong Lu
2022 J jnl
AIONER: All-in-one scheme-based biomedical named entity recognition using deep learning.
CoRR
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu
2022 J jnl
Assigning Species Information to Corresponding Genes by a Sequence Labeling Framework.
CoRR
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj Dogan, Zhiyong Lu
2022 J jnl
Assigning species information to corresponding genes by a sequence labeling framework.
Database J. Biol. Databases Curation
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj, Zhiyong Lu
2022 Misc conf
BioRED: A Comprehensive Biomedical Relation Extraction Dataset.
AMIA
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
2022 J jnl
BioRED: A Comprehensive Biomedical Relation Extraction Dataset.
CoRR
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
2022 J jnl
BioRED: a rich biomedical relation extraction dataset.
Briefings Bioinform.
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
2022 J jnl
PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology.
J. Biomed. Informatics
Shankai Yan, Ling Luo, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
2021 J jnl
BERT-GT: Cross-sentence n-ary relation extraction with BERT and Graph Transformer.
CoRR
Po-Ting Lai, Zhiyong Lu
2021 J jnl
BERT-GT: cross-sentence n-ary relation extraction with BERT and Graph Transformer.
Bioinform.
Po-Ting Lai, Zhiyong Lu
2021 J jnl
PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology.
Bioinform.
Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
2020 J jnl
Biomedical named entity recognition and linking datasets: survey and our recent development.
Briefings Bioinform.
Ming-Siang Huang, Po-Ting Lai, Pei-Yen Lin, Yu-Ting You, Richard Tzong-Han Tsai, Wen-Lian Hsu
2020 — conf
Development and Validation of a Novel Reliable Method for Wet Testing on Biochemical Chip.
ITC-Asia
Po-Ting Lai, Yu-Hao Chiu, Chieh-Wen Lu, Kuang-Hsiang Liu, Tung-Liang Chiu, Wendy Chen
2020 J jnl
PhenoTagger: A Hybrid Method for Phenotype Concept Recognition using Human Phenotype Ontology.
CoRR
Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
2019 J jnl
Revised JNLPBA Corpus: A Revised Version of Biomedical NER Corpus for Relation Extraction Task.
CoRR
Ming-Siang Huang, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu
2018 J jnl
Statistical principle-based approach for gene and protein related object recognition.
J. Cheminformatics
Po-Ting Lai, Ming-Siang Huang, Ting-Hao Yang, Wen-Lian Hsu, Richard Tzong-Han Tsai
2017 — conf
Enhancing Drug-Drug Interaction Classification with Corpus-level Feature and Classifier Ensemble.
DDDSM@IJCNLP
Jing Cyun Tu, Po-Ting Lai, Richard Tzong-Han Tsai
2016 J jnl
BelSmile: a biomedical semantic role labeling approach for extracting biological expression language from text.
Database J. Biol. Databases Curation
Po-Ting Lai, Yu-Yan Lo, Ming-Siang Huang, Yu-Cheng Hsiao, Richard Tzong-Han Tsai
2016 J jnl
MET network in PubMed: a text-mined network visualization and curation system.
Database J. Biol. Databases Curation
Hong-Jie Dai, Chu-Hsien Su, Po-Ting Lai, Ming-Siang Huang, Jitendra Jonnagaddala, Toni Rose Jue, Shruti Rao, Hui-Jou Chou, Marija Milacic, Onkar Singh, Syed Abdul Shabbir, Wen-Lian Hsu
2016 J jnl
NERChem: adapting NERBio to chemical patents via full-token features and named entity feature with chemical sub-class composition.
Database J. Biol. Databases Curation
Richard Tzong-Han Tsai, Yu-Cheng Hsiao, Po-Ting Lai
2015 J jnl
Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization.
J. Cheminformatics
Hong-Jie Dai, Po-Ting Lai, Yung-Chun Chang, Richard Tzong-Han Tsai
2014 — conf
A Hybrid System for Temporal Relation Extraction from Discharge Summaries.
TAAI
Yueh-Lin Yang, Po-Ting Lai, Richard Tzong-Han Tsai
2014 J jnl
A resource-saving collective approach to biomedical semantic role labeling.
BMC Bioinform.
Richard Tzong-Han Tsai, Po-Ting Lai
2014 — conf
NCU IISR System for NTCIR-11 MedNLP-2 Task.
NTCIR
Sheng-Wei Chen, Po-Ting Lai, Yi-Lin Tsai, Jay Kuan-Chieh Chung, Sherry Shih-Huan Hsiao, Richard Tzong-Han Tsai
2012 J jnl
Coreference resolution of medical concepts in discharge summaries by exploiting contextual information.
J. Am. Medical Informatics Assoc.
Hong-Jie Dai, Chun-Yu Chen, Chi-Yang Wu, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu
2011 J jnl
A Dynamic Programming Re-ranking Approach to Enhance PPI Interactor Extraction.
Inf. Media Technol.
Po-Ting Lai, Richard Tzong-Han Tsai
2011 J jnl
Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles.
BMC Bioinform.
Richard Tzong-Han Tsai, Po-Ting Lai
2011 J jnl
MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature.
BMC Bioinform.
Yu-Ching Fang, Po-Ting Lai, Hong-Jie Dai, Wen-Lian Hsu
2011 J jnl
Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection.
BMC Bioinform.
Richard Tzong-Han Tsai, Po-Ting Lai
2010 — conf
Global Ranking via Data Fusion.
COLING (Posters)
Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu
2010 J jnl
Multistage Gene Normalization and SVM-Based Ranking for Protein Interactor Extraction in Full-Text Articles.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai
2010 J jnl
Using Contextual Information to Clarify Cross-Species Gene Normalization Ambiguity.
Int. J. Softw. Eng. Knowl. Eng.
Richard Tzong-Han Tsai, Po-Ting Lai
2009 J jnl
HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features.
BMC Bioinform.
Richard Tzong-Han Tsai, Po-Ting Lai, Hong-Jie Dai, Chi-Hsin Huang, Yue-Yang Bow, Yen-Ching Chang, Wen-Harn Pan, Wen-Lian Hsu
2009 J jnl
PubMed-EX: a web browser extension to enhance PubMed search with text mining features.
Bioinform.
Richard Tzong-Han Tsai, Hong-Jie Dai, Po-Ting Lai, Chi-Hsin Huang
2009 Misc conf
Using Contextual Information to Clarify Gene Normalization Ambiguity.
IRI
Po-Ting Lai, Yue-Yang Bow, Chi-Hsin Huang, Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu