Pirooz Vakili

38 papers C 1Misc 9Journal 17Unranked 11
YearRankTypeTitle / Venue / Authors
2023 J jnl
Improved prediction of MHC-peptide binding using protein language models.
Frontiers Bioinform.
Nasser Hashemi, Boran Hao, Mikhail Ignatov, Ioannis Ch. Paschalidis, Pirooz Vakili, Sandor Vajda, Dima Kozakov
2016 J jnl
Focused grid-based resampling for protein docking and mapping.
J. Comput. Chem.
Artem B. Mamonov, Mohammad Moghadasi, Hanieh Mirzaei, Shahrooz Zarbafian, Laurie E. Grove, Tanggis Bohnuud, Pirooz Vakili, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov
2015 J jnl
The Impact of Side-Chain Packing on Protein Docking Refinement.
J. Chem. Inf. Model.
Mohammad Moghadasi, Hanieh Mirzaei, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis, Dima Kozakov
2014 — conf
A Subspace Semi-Definite programming-based Underestimation (SSDU) method for stochastic global optimization in protein docking.
CDC
Feng Nan, Mohammad Moghadasi, Pirooz Vakili, Sandor Vajda, Dima Kozakov, Ioannis Ch. Paschalidis
2014 — conf
Optimization on the space of rigid and flexible motions: An alternative manifold optimization approach.
CDC
Pirooz Vakili, Hanieh Mirzaei, Shahrooz Zarbafian, Ioannis Ch. Paschalidis, Dima Kozakov, Sandor Vajda
2013 — conf
A new distributed algorithm for side-chain positioning in the process of protein docking.
CDC
Mohammad Moghadasi, Dima Kozakov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis
2013 — conf
Flexible refinement of protein-ligand docking on manifolds.
CDC
Hanieh Mirzaei, Elizabeth A. Villar, Scott E. Mottarella, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov, Pirooz Vakili
2012 — conf
A message passing approach to Side Chain Positioning with applications in protein docking refinement.
CDC
Mohammad Moghadasi, Dima Kozakov, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis
2012 — conf
A new approach to rigid body minimization with application to molecular docking.
CDC
Hanieh Mirzaei, Dima Kozakov, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Pirooz Vakili
2010 Misc conf
Control variates for sensitivity estimation.
WSC
Tarik Borogovac, Na Sun, Pirooz Vakili
2010 Misc conf
Importance sampling for parametric estimation.
WSC
Xiaojin Tang, Pirooz Vakili
2008 J jnl
A Control Variate Approach for Improving Efficiency of Ensemble Monte Carlo
CoRR
Tarik Borogovac, Francis J. Alexander, Pirooz Vakili
2008 Misc conf
Control variate technique: A constructive approach.
WSC
Tarik Borogovac, Pirooz Vakili
2008 Misc conf
Monotonicity and stratification.
WSC
Gang Zhao, Pirooz Vakili
2008 J jnl
Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes.
PLoS Comput. Biol.
Yang Shen, Ioannis Ch. Paschalidis, Pirooz Vakili, Sandor Vajda
2007 Misc conf
Efficient estimation of option price and price sensitivities via structured database Monte Carlo (SDMC).
WSC
Gang Zhao, Tarik Borogovac, Pirooz Vakili
2007 — conf
Optimizing noisy funnel-like functions on the euclidean group with applications to protein docking.
CDC
Yang Shen, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis
2007 J jnl
SDU: A Semidefinite Programming-Based Underestimation Method for Stochastic Global Optimization in Protein Docking.
IEEE Trans. Autom. Control.
Ioannis Ch. Paschalidis, Yang Shen, Pirooz Vakili, Sandor Vajda
2006 Misc conf
A new efficient simulation strategy for pricing path-dependent options.
WSC
Gang Zhao, Yakun Zhou, Pirooz Vakili
2006 — conf
Protein-protein docking with reduced potentials by exploiting multi-dimensional energy funnels.
EMBC
Ioannis Ch. Paschalidis, Yang Shen, Pirooz Vakili, Sandor Vajda
2005 — conf
A Semi-Definite programming-based Underestimation method for global optimization in molecular docking.
CDC/ECC
Ioannis Ch. Paschalidis, Yang Shen, Sandor Vajda, Pirooz Vakili
2005 J jnl
On the Value of Flexibility in R&D Projects.
Manag. Sci.
Leonardo P. Santiago, Pirooz Vakili
2004 J jnl
Capacity and Production Managment in a Single Product Manufacturing System.
Ann. Oper. Res.
Jian-Qiang Hu, Pirooz Vakili, Lei Huang
2004 C conf
Development of a discrete event dynamic systems curriculum using a Web-based "real-time" simulated factory.
ACC
Christos G. Cassandras, Meimei Deng, Jian-Qiang Hu, Christos G. Panayiotou, Pirooz Vakili, Chenming Zhao
2004 — conf
Value of flexibility in a finite horizon decision process.
CDC
Leonardo P. Santiago, Pirooz Vakili
2001 — conf
Optimal allocation of heterogeneous resources: a control-theoretic approach.
CDC
Yanfeng Wang, James R. Perkins, Pirooz Vakili, Anil Khurana
1999 J jnl
A Non-myopic Utility Function for Statistical Global Optimization Algorithms.
J. Glob. Optim.
Simon Streltsov, Pirooz Vakili
1999 J jnl
Optimality of index policies for a sequential sampling problem.
IEEE Trans. Autom. Control.
David A. Castañón, Simon Streltsov, Pirooz Vakili
1996 J jnl
Periodic and chaotic dynamics of a switched-server system under corridor policies.
IEEE Trans. Autom. Control.
Guo-Xiang Yu, Pirooz Vakili
1996 J jnl
Variance reduction algorithms for parallel replicated simulation of uniformized Markov chains.
Discret. Event Dyn. Syst.
Simon Streltsov, Pirooz Vakili
1995 Misc conf
Variance Reduction for Discrete Event Systems Driven by Poisson Processes.
WSC
Pirooz Vakili
1994 J jnl
Optimality of hedging point policies in the production control of failure prone manufacturing systems.
IEEE Trans. Autom. Control.
Jian-Qiang Hu, Pirooz Vakili, Guo-Xiang Yu
1994 J jnl
Uniformization based sensitivity estimation for a class of discrete-event systems.
Discret. Event Dyn. Syst.
Pirooz Vakili, Guo-Xiang Yu
1993 Misc conf
Parallel replicated simulation of Markov chains: implementation and variance reduction.
WSC
Simon Streltsov, Pirooz Vakili
1992 Misc conf
Correlation of Markov Chains Simulated in Parallel.
WSC
Paul Glasserman, Pirooz Vakili
1992 J jnl
Massively Parallel and Distributed Simulation of a Class of Discrete Event Systems: A Different Perspective.
ACM Trans. Model. Comput. Simul.
Pirooz Vakili
1992 J jnl
Ordinal optimization of DEDS.
Discret. Event Dyn. Syst.
Yu-Chi Ho, R. S. Sreenivas, Pirooz Vakili
1991 J jnl
Using a standard clock technique for efficient simulation.
Oper. Res. Lett.
Pirooz Vakili