Piotr Formanowicz

49 papers B 1Misc 1Journal 44Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Comparison by partition - Finding Petri nets similarity on the basis of subnets.
Comput. Biol. Medicine
Bartlomiej Szawulak, Marcin Radom, Piotr Formanowicz
2025 J jnl
Graphlet Degree Distribution Sensibility in Petri Net-Based Models of Biological Systems.
IEEE Trans. Comput. Biol. Bioinform.
Bartlomiej Szawulak, Piotr Formanowicz
2025 J jnl
Universal entity linking.
Eng. Appl. Artif. Intell.
Adam Aron Rynkiewicz, Raúl Palma, Piotr Formanowicz
2024 J jnl
Algorithms for evaluation of minimal cut sets.
J. Biomed. Informatics
Marcin Radom, Agnieszka Rybarczyk, Igor Piekarz, Piotr Formanowicz
2024 J jnl
Exploring relationship between hypercholesterolemia and instability of atherosclerotic plaque - An approach based on a matrix population model.
J. Bioinform. Comput. Biol.
Mateusz Twardawa, Kaja Gutowska, Piotr Formanowicz
2024 J jnl
Extended time Petri nets.
CoRR
Marcin Radom, Piotr Formanowicz
2024 J jnl
Integrating UAV-Enabled Base Stations in 3D Networks: QoS-Aware Joint Fronthaul and Backhaul Design.
CoRR
Salim Janji, Piotr Wawrzyniak, Piotr Formanowicz, Adrian Kliks
2024 J jnl
Searching for significant reactions and subprocesses in models of biological systems based on Petri nets.
Comput. Biol. Medicine
Kaja Gutowska, Piotr Formanowicz
2022 J jnl
Comparing Petri net-based models of biological systems using Holmes.
Bioinform.
Bartlomiej Szawulak, Marcin Radom, Piotr Formanowicz
2022 J jnl
On anti-occurrence of subsets of transitions in Petri net-based models of complex biological systems.
Biosyst.
Kaja Gutowska, Piotr Formanowicz
2020 — conf
Systems Approach Based on Petri Nets as a Method for Modeling and Analysis of Complex Biological Systems Presented on the Example of Atherosclerosis Development Process.
KKA
Kaja Gutowska, Dorota Formanowicz, Piotr Formanowicz
2019 J jnl
A method for constructing artificial DNA libraries based on generalized de Bruijn sequences.
Discret. Appl. Math.
Adam Kozak, Tomasz Glowacki, Piotr Formanowicz
2018 J jnl
Factors Influencing Essential Hypertension and Cardiovascular Disease Modeled and Analyzed using Stochastic Petri Nets.
Fundam. Informaticae
Dorota Formanowicz, Agnieszka Rybarczyk, Piotr Formanowicz
2018 J jnl
The role of Fenton reaction in ROS-induced toxicity underlying atherosclerosis - modeled and analyzed using a Petri net-based approach.
Biosyst.
Dorota Formanowicz, Marcin Radom, Agnieszka Rybarczyk, Piotr Formanowicz
2017 J jnl
Holmes: a graphical tool for development, simulation and analysis of Petri net based models of complex biological systems.
Bioinform.
Marcin Radom, Agnieszka Rybarczyk, Bartlomiej Szawulak, Hubert Andrzejewski, Piotr Chabelski, Adam Kozak, Piotr Formanowicz
2016 J jnl
A multilevel ant colony optimization algorithm for classical and isothermic DNA sequencing by hybridization with multiplicity information available.
Comput. Biol. Chem.
Kamil Kwarciak, Marcin Radom, Piotr Formanowicz
2014 J jnl
Tabu search algorithm for DNA sequencing by hybridization with multiplicity information available.
Comput. Oper. Res.
Kamil Kwarciak, Piotr Formanowicz
2013 J jnl
Hemojuvelin-hepcidin axis modeled and analyzed using Petri nets.
J. Biomed. Informatics
Dorota Formanowicz, Adam Kozak, Tomasz Glowacki, Marcin Radom, Piotr Formanowicz
2013 J jnl
On a generalized model of labeled graphs.
Discret. Appl. Math.
Adam Kozak, Tomasz Glowacki, Piotr Formanowicz
2012 J jnl
Poseidon: An information retrieval and extraction system for metagenomic marine science.
Ecol. Informatics
Marcin Radom, Agnieszka Rybarczyk, Renzo Kottmann, Piotr Formanowicz, Marta Szachniuk, Frank Oliver Glöckner, Dietrich Rebholz-Schuhmann, Jacek Blazewicz
2012 J jnl
The Fan-Raspaud conjecture: A randomized algorithmic approach and application to the pair assignment problem in cubic networks.
Int. J. Appl. Math. Comput. Sci.
Piotr Formanowicz, Krzysztof Tanas
2011 J jnl
Adaptive memory programming: local search parallel algorithms for phylogenetic tree construction.
Ann. Oper. Res.
Jacek Blazewicz, Piotr Formanowicz, Pawel Kedziora, Pawel Marciniak, Przemyslaw Taront
2010 J jnl
Genetic and Tabu search algorithms for peptide assembly problem.
RAIRO Oper. Res.
Jacek Blazewicz, Marcin Borowski, Piotr Formanowicz, Tomasz Glowacki
2010 J jnl
Towards Prediction of HCV Therapy Efficiency.
Comput. Math. Methods Medicine
Szymon Wasik, Paulina Jackowiak, Jacek B. Krawczyk, Pawel Kedziora, Piotr Formanowicz, Marek Figlerowicz, Jacek Blazewicz
2009 J jnl
Modeling the process of human body iron homeostasis using a variant of timed Petri nets.
Discret. Appl. Math.
Jacek Blazewicz, Dorota Formanowicz, Piotr Formanowicz, Andrea Sackmann, Michal Sajkowski
2009 J jnl
New insights into the human body iron metabolism analyzed by a Petri net based approach.
Biosyst.
Andrea Sackmann, Dorota Formanowicz, Piotr Formanowicz, Jacek Blazewicz
2009 J jnl
Some remarks on evaluating the quality of the multiple sequence alignment based on the BAliBASE benchmark.
Int. J. Appl. Math. Comput. Sci.
Jacek Blazewicz, Piotr Formanowicz, Pawel Wojciechowski
2007 J jnl
A polynomial time equivalence between DNA sequencing and the exact perfect matching problem.
Discret. Optim.
Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Petra Schuurman, Gerhard J. Woeginger
2007 J jnl
An analysis of the Petri net based model of the human body iron homeostasis process.
Comput. Biol. Chem.
Andrea Sackmann, Dorota Formanowicz, Piotr Formanowicz, Ina Koch, Jacek Blazewicz
2007 J jnl
Petri net based model of the body iron homeostasis.
J. Biomed. Informatics
Dorota Formanowicz, Andrea Sackmann, Piotr Formanowicz, Jacek Blazewicz
2005 J jnl
An improved approximation algorithm for the single machine total completion time scheduling problem with availability constraints.
Eur. J. Oper. Res.
Cherif Sadfi, Bernard Penz, Christophe Rapine, Jacek Blazewicz, Piotr Formanowicz
2005 J jnl
Multistage isothermic sequencing by hybridization.
Comput. Biol. Chem.
Jacek Blazewicz, Piotr Formanowicz
2005 J jnl
Selected combinatorial problems of computational biology.
Eur. J. Oper. Res.
Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak
2005 — conf
Tabu Search Method for Determining Sequences of Amino Acids in Long Polypeptides.
EvoWorkshops
Jacek Blazewicz, Marcin Borowski, Piotr Formanowicz, Maciej Stobiecki
2004 J jnl
An Algorithm for an Automatic NOE Pathways Analysis of 2D NMR Spectra of RNA Duplexes.
J. Comput. Biol.
Ryszard W. Adamiak, Jacek Blazewicz, Piotr Formanowicz, Zofia Gdaniec, Marta Kasprzak, Mariusz Popenda, Marta Szachniuk
2004 J jnl
Sequencing by hybridization with isothermic oligonucleotide libraries.
Discret. Appl. Math.
Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Wojciech T. Markiewicz
2004 J jnl
Tabu search algorithm for DNA sequencing by hybridization with isothermic libraries.
Comput. Biol. Chem.
Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Wojciech T. Markiewicz, Aleksandra Swiercz
2003 — conf
DNA Based Algorithms for Some Scheduling Problems.
EvoWorkshops
Jacek Blazewicz, Piotr Formanowicz, Radoslaw Urbaniak
2003 Misc conf
Parallel Algorithms for Evolutionary History Reconstruction.
PPAM
Jacek Blazewicz, Piotr Formanowicz, Pawel Kedziora, Pawel Wojciechowski
2002 J jnl
A heuristic managing errors for DNA sequencing.
Bioinform.
Jacek Blazewicz, Piotr Formanowicz, Frédéric Guinand, Marta Kasprzak
2002 B conf
DNA Sequencing, Eulerian Graphs, and the Exact Perfect Matching Problem.
WG
Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Petra Schuurman, Gerhard J. Woeginger
2002 J jnl
On the recognition of de Bruijn graphs and their induced subgraphs.
Discret. Math.
Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Daniel Kobler
2002 J jnl
Scheduling jobs in open shops with limited machine availability.
RAIRO Oper. Res.
Jacek Blazewicz, Piotr Formanowicz
2002 J jnl
Two-machine flow shops with limited machine availability.
Eur. J. Oper. Res.
Wieslaw Kubiak, Jacek Blazewicz, Piotr Formanowicz, Joachim Breit, Günter Schmidt
2001 J jnl
Complexity results and approximation algorithms for the two machine no-wait flow-shop with limited machine availability.
J. Oper. Res. Soc.
Marie-Laure Espinouse, Piotr Formanowicz, Bernard Penz
2001 J jnl
Construction of DNA restriction maps based on a simplified experiment.
Bioinform.
Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Marcin Jaroszewski, Wojciech T. Markiewicz
2000 J jnl
Scheduling preemptable tasks on parallel processors with limited availability.
Parallel Comput.
Jacek Blazewicz, Maciej Drozdowski, Piotr Formanowicz, Wieslaw Kubiak, Günter Schmidt
2000 J jnl
Tabu search for DNA sequencing with false negatives and false positives.
Eur. J. Oper. Res.
Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Wojciech T. Markiewicz, Jan Weglarz
1999 J jnl
DNA Sequencing With Positive and Negative Errors.
J. Comput. Biol.
Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Wojciech T. Markiewicz, Jan Weglarz