Ping Gong

33 papers C 1Journal 18Unranked 14
YearRankTypeTitle / Venue / Authors
2022 J jnl
An autoencoder-based deep learning method for genotype imputation.
Frontiers Artif. Intell.
Meng Song, Jonathan Greenbaum, Joseph Luttrell IV, Weihua Zhou, Chong Wu, Zhe Luo, Chuan Qiu, Lan Juan Zhao, Kuan-Jui Su, Qing Tian, Hui Shen, Huixiao Hong, Ping Gong, Xinghua Shi, Hong-Wen Deng, Chaoyang Zhang
2020 J jnl
Structure-activity relationship-based chemical classification of highly imbalanced Tox21 datasets.
J. Cheminformatics
Gabriel Idakwo, Sundar Thangapandian, Joseph Luttrell IV, Yan Li, Nan Wang, Zhaoxian Zhou, Huixiao Hong, Bei Yang, Chaoyang Zhang, Ping Gong
2019 J jnl
Correction to: Similarities and differences between variants called with human reference genome HG19 or HG38.
BMC Bioinform.
Bohu Pan, Rebecca Kusko, Wenming Xiao, Yuanting Zheng, Zhichao Liu, Chunlin Xiao, Sugunadevi Sakkiah, Wenjing Guo, Ping Gong, Chaoyang Zhang, Weigong Ge, Leming Shi, Weida Tong, Huixiao Hong
2019 J jnl
Similarities and differences between variants called with human reference genome HG19 or HG38.
BMC Bioinform.
Bohu Pan, Rebecca Kusko, Wenming Xiao, Yuanting Zheng, Zhichao Liu, Chunlin Xiao, Sugunadevi Sakkiah, Wenjing Guo, Ping Gong, Chaoyang Zhang, Weigong Ge, Leming Shi, Weida Tong, Huixiao Hong
2018 J jnl
Comparative toxicogenomics of three insensitive munitions constituents 2, 4-dinitroanisole, nitroguanidine and nitrotriazolone in the soil nematode Caenorhabditis elegans.
BMC Syst. Biol.
Ping Gong, Keri B. Donohue, Anne M. Mayo, Yuping Wang, Huixiao Hong, Mitchell S. Wilbanks, Natalie D. Barker, Xin Guan, Kurt A. Gust
2018 J jnl
MICRAT: a novel algorithm for inferring gene regulatory networks using time series gene expression data.
BMC Syst. Biol.
Bei Yang, Yaohui Xu, Andrew S. Maxwell, Wonryull Koh, Ping Gong, Chaoyang Zhang
2017 J jnl
Deep learning architectures for multi-label classification of intelligent health risk prediction.
BMC Bioinform.
Andrew S. Maxwell, Runzhi Li, Bei Yang, Heng Weng, Aihua Ou, Huixiao Hong, Zhaoxian Zhou, Ping Gong, Chaoyang Zhang
2016 — conf
Factorial analysis of error correction performance using simulated next-generation sequencing data.
BIBM
Isaac Akogwu, Nan Wang, Chaoyang Zhang, Hwanseok Choi, Huixiao Hong, Ping Gong
2014 J jnl
Gene regulatory network inference and validation using relative change ratio analysis and time-delayed dynamic Bayesian network.
EURASIP J. Bioinform. Syst. Biol.
Peng Li, Ping Gong, Haoni Li, Edward J. Perkins, Nan Wang, Chaoyang Zhang
2014 J jnl
SeqAssist: a novel toolkit for preliminary analysis of next-generation sequencing data.
BMC Bioinform.
Yan Peng, Andrew S. Maxwell, Natalie D. Barker, Jennifer G. Laird, Alan J. Kennedy, Nan Wang, Chaoyang Zhang, Ping Gong
2013 — conf
Deciphering chemically-induced reversible neurotoxicity by reconstructing perturbed pathways from time series microarray gene expression data.
GENSiPS
Yi Yang, Si Li, Andrew S. Maxwell, Natalie D. Barker, Yan Peng, Ying Li, Haoni Li, Xi Wu, Peng Li, Tao Huang, Chenhua Zhang, Nan Wang, Edward J. Perkins, Chaoyang Zhang, Ping Gong
2013 J jnl
Differential reconstructed gene interaction networks for deriving toxicity threshold in chemical risk assessment.
BMC Bioinform.
Yi Yang, Andrew S. Maxwell, Xiaowei Zhang, Nan Wang, Edward J. Perkins, Chaoyang Zhang, Ping Gong
2012 J jnl
Biomarker discovery using 1-norm regularization for multiclass earthworm microarray gene expression data.
Neurocomputing
Xiaofei Nan, Nan Wang, Ping Gong, Chaoyang Zhang, Yixin Chen, Dawn Wilkins
2011 — conf
Reconstruction of gene regulatory networks using state space model.
BIBM Workshops
Xi Wu, Nan Wang, Chaoyang Zhang, Ping Gong
2011 J jnl
RefNetBuilder: a platform for construction of integrated reference gene regulatory networks from expressed sequence tags.
BMC Bioinform.
Ying Li, Ping Gong, Edward J. Perkins, Chaoyang Zhang, Nan Wang
2011 J jnl
State Space Model with hidden variables for reconstruction of gene regulatory networks.
BMC Syst. Biol.
Xi Wu, Peng Li, Nan Wang, Ping Gong, Edward J. Perkins, Youping Deng, Chaoyang Zhang
2010 J jnl
A novel gene network inference algorithm using predictive minimum description length approach.
BMC Syst. Biol.
Vijender Chaitankar, Preetam Ghosh, Edward J. Perkins, Ping Gong, Youping Deng, Chaoyang Zhang
2010 — conf
Effects of cDNA microarray time-series data size on gene regulatory network inference accuracy.
BCB
Vijender Chaitankar, Preetam Ghosh, Chaoyang Zhang, Ping Gong, Edward J. Perkins
2010 — conf
Gene selection using 1-norm regularization for multi-class microarray data.
BIBM
Xiaofei Nan, Nan Wang, Ping Gong, Chaoyang Zhang, Yixin Chen, Dawn Wilkins
2010 J jnl
In silico identification of conserved microRNAs and their target transcripts from expressed sequence tags of three earthworm species.
Comput. Biol. Chem.
Ping Gong, Fuliang Xie, Baohong Zhang, Edward J. Perkins
2010 — conf
In silico identification of microRNAs from expressed sequence tags of three earthworm species.
BCB
Ping Gong, Fuliang Xie, Baohong Zhang, Edward J. Perkins
2010 — conf
Performance evaluation of the time-delayed dynamic Bayesian network approach to inferring gene regulatory networks from time series microarray data.
BCB
Haoni Li, Peng Li, Chaoyang Zhang, Nan Wang, Ping Gong, Edward J. Perkins
2010 J jnl
Time lagged information theoretic approaches to the reverse engineering of gene regulatory networks.
BMC Bioinform.
Vijender Chaitankar, Preetam Ghosh, Edward J. Perkins, Ping Gong, Chaoyang Zhang
2009 — conf
Discovery of Biomarker Genes from Earthworm Microarray Data by Discriminant Analysis and Clustering.
IJCBS
Ying Li, Nan Wang, Edward J. Perkins, Ping Gong
2009 — conf
Gene Regulatory Network Inference Using Predictive Minimum Description Length Principle and Conditional Mutual Information.
IJCBS
Vijender Chaitankar, Chaoyang Zhang, Preetam Ghosh, Edward J. Perkins, Ping Gong, Youping Deng
2009 — conf
Generation and Analysis of Expressed Sequence Tags from the Sheepshead Minnow (Cyprinodon Variegatus).
BIOCOMP
Alexander Pozhikov, Mehdi Pirooznia, Rachel Ryan, Chaoyang Zhang, Ping Gong, Edward J. Perkins, Youping Deng, Marius Brouwer
2008 — conf
A Strategy for High Throughput Microarray Oligo Probe Design Using 454 and Sanger Sequencing Data of Eisenia fetida Expressed Sequence Tags.
BIOCOMP
Ping Gong, Mehdi Pirooznia, Xin Guan, J. Cristobal Vera, Chun Liang, Youping Deng, Chaoyang Zhang, Edward J. Perkins
2008 — conf
Creating a Workflow for Expressed Sequence Tags Analysis.
BIOCOMP
Mehdi Pirooznia, Ping Gong, Chaoyang Zhang, Edward J. Perkins, Youping Deng
2008 — conf
Inferring Gene Regulatory Network of Yeast Cell-Cycle using Dynamic Bayesian Network.
BIOCOMP
Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng
2007 C conf
An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments.
BIBE
Mehdi Pirooznia, Arun Rawat, Jack Y. Yang, Mary Qu Yang, Ping Gong, Edward J. Perkins, Youping Deng
2007 J jnl
Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm
BMC Bioinform.
Mehdi Pirooznia, Ping Gong, Xin Guan, Laura S. Inouye, Kuan Yang, Edward J. Perkins, Youping Deng
2007 J jnl
Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks.
BMC Bioinform.
Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng
2006 — conf
Comparison of Gene Expression Effects in Liver Tissue and Primary Hepatocyte Cell Cultures After Exposure to Hexahydro-1, 3, 5Trinitro-1, 3, 5-Triazine.
IMSCCS (1)
Edward J. Perkins, Wenjun Bao, Xin Guan, Choo-Yaw Ang, Russell D. Wolfinger, Tzu-Ming Chu, Ping Gong, Sharon A. Meyer, Laura S. Inouye