Pinaki Sarder - RankMe

48 papers Journal 13Unranked 34

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A Comprehensive Benchmark of Histopathology Foundation Models for Kidney Digital Pathology Images. CoRR Harishwar Reddy Kasireddy, Patricio S. La Rosa, Akshita Gupta, Anindya S. Paul, Jamie L. Fermin, William L. Clapp, Meryl A. Waldman, Tarek M. El-Ashkar, Sanjay Jain, Luis Rodrigues, Kuang Yu Jen, Avi Z. Rosenberg, Michael T. Eadon, Jeffrey Hodgin, Pinaki Sarder
2026	J	`jnl`	Position Paper: Artificial Intelligence in Medical Image Analysis: Advances, Clinical Translation, and Emerging Frontiers. IEEE J. Biomed. Health Informatics Andreas S. Panayides, Hao Chen, Nenad D. Filipovic, Tijana Geroski, Junlin Hou, Karim Lekadir, Kostas Marias, George K. Matsopoulos, Giorgos Papanastasiou, Pinaki Sarder, Georgia D. Tourassi, Sotirios A. Tsaftaris, Huazhu Fu, Efthyvoulos C. Kyriacou, Christos P. Loizou, Michalis E. Zervakis, Joel H. Saltz, Farah E. Shamout, Ken C. L. Wong, Jianhua Yao, Amir A. Amini, Dimitrios I. Fotiadis, Constantinos S. Pattichis, Marios S. Pattichis
2025	J	`jnl`	CASC-AI: Consensus-aware Self-corrective AI Agents for Noise Cell Segmentation. CoRR Ruining Deng, Yihe Yang, David J. Pisapia, Benjamin Liechty, Junchao Zhu, Juming Xiong, Junlin Guo, Zhengyi Lu, Jiacheng Wang, Xing Yao, Runxuan Yu, Rendong Zhang, Gaurav Rudravaram, Mengmeng Yin, Pinaki Sarder, Haichun Yang, Yuankai Huo, Mert R. Sabuncu
2025	J	`jnl`	Interactive visualization of kidney micro-compartmental segmentations and associated pathomics on whole slide images. CoRR Mark S. Keller, Nicholas J. Lucarelli, Yijiang Chen, Samuel P. Border, Andrew Janowczyk, Jonathan Himmelfarb, Matthias Kretzler, Jeffrey Hodgin, Laura Barisoni, Dawit Demeke, Leal Herlitz, Gilbert Moeckel, Avi Z. Rosenberg, Yanli Ding, Pinaki Sarder, Nils Gehlenborg
2025	J	`jnl`	PathDiff: Histopathology Image Synthesis with Unpaired Text and Mask Conditions. CoRR Mahesh Bhosale, Abdul Wasi, Yuanhao Zhai, Yunjie Tian, Samuel P. Border, Nan Xi, Pinaki Sarder, Junsong Yuan, David S. Doermann, Xuan Gong
2023	—	`conf`	Automated reference kidney histomorphometry using a panoptic segmentation neural network correlates to patient demographics and creatinine. Digital and Computational Pathology Brandon Ginley, Nicholas J. Lucarelli, Jarcy Zee, Sanjay Jain, Seung Seok Han, Luis Rodrigues, Michelle L. Wong, Kuang-Yu Jen, Pinaki Sarder
2023	—	`conf`	Generative modeling of histology tissue reduces human annotation effort for segmentation model development. Digital and Computational Pathology Brendon Lutnick, Nicholas J. Lucarelli, Pinaki Sarder
2023	—	`conf`	Improving quantification of renal fibrosis using deep-DUET. Digital and Computational Pathology Samuel P. Border, Avi Rosenberg, Jarcy Zee, Richard M. Levenson, Kuang-Yu Jen, Pinaki Sarder, Farzad Fereidouni
2023	—	`conf`	Predicting Papillary Renal Cell Carcinoma Prognosis Using Integrative Analysis of Histopathological Images and Genomic Data. IWBBIO (2) Shaira Limson Kee, Michael Aaron G. Sy, Samuel P. Border, Nicholas J. Lucarelli, Akshita Gupta, Pinaki Sarder, Marvin C. Masalunga, Myles Joshua Toledo Tan
2023	—	`conf`	Spatially aware transformer networks for contextual prediction of diabetic nephropathy progression from whole slide images. Digital and Computational Pathology Benjamin Shickel, Nicholas J. Lucarelli, Adish Rao, Donghwan Yun, Kyung Chul Moon, Seung Seok Han, Pinaki Sarder
2023	—	`conf`	The Triple Aim of a Semester-Long Course in Science, Technology, and Society. TALE Myles Joshua Toledo Tan, Alfredo Bayu Satriya, Shaira Limson Kee, Michael Aaron G. Sy, Pinaki Sarder
2022	—	`conf`	A cloud-based tool for federated segmentation of whole slide images. Digital and Computational Pathology Brendon Lutnick, David Manthey, Jan U. Becker, Jonathan E. Zuckerman, Luis Rodrigues, Kuang Yu Jen, Pinaki Sarder
2022	—	`conf`	Automated tubular morphometric visualization for whole kidney biopsy. Digital and Computational Pathology Neil Kavthekar, Brandon Ginley, Samuel P. Border, Nicholas J. Lucarelli, Kuang-Yu Jen, Pinaki Sarder
2022	—	`conf`	Computational integration of renal histology and urinary proteomics using neural networks. Digital and Computational Pathology Nicholas J. Lucarelli, Donghwan Yun, Dohyun Han, Brandon Ginley, Kyung Chul Moon, Avi Rosenberg, John Tomaszewski, Seung Seok Han, Pinaki Sarder
2022	—	`conf`	HistoLens: a generalizable tool for increasing accessibility and interpretability of quantitative analyses in digital pathology. Digital and Computational Pathology Samuel P. Border, Brandon Ginley, John E. Tomaszewski, Pinaki Sarder
2022	—	`conf`	Integrating image analysis with single cell RNA-seq data to study podocyte-specific changes in diabetic kidney disease. Digital and Computational Pathology Darshana Govind, Saber Meamardoost, Rabi Yacoub, Rudiyanto Gunawan, John E. Tomaszewski, Pinaki Sarder
2022	—	`conf`	Predicting the Visual Attention of Pathologists Evaluating Whole Slide Images of Cancer. MOVI@MICCAI Souradeep Chakraborty, Rajarsi Gupta, Ke Ma, Darshana Govind, Pinaki Sarder, Won-Tak Choi, Waqas Mahmud, Eric Yee, Felicia Allard, Beatrice Knudsen, Gregory J. Zelinsky, Joel H. Saltz, Dimitris Samaras
2022	J	`jnl`	SAM: Self-augmentation mechanism for COVID-19 detection using chest X-ray images. Knowl. Based Syst. Usman Muhammad, Md. Ziaul Hoque, Mourad Oussalah, Anja Keskinarkaus, Tapio Seppänen, Pinaki Sarder
2021	—	`conf`	A distributed system improves inter-observer and AI concordance in annotating interstitial fibrosis and tubular atrophy. Digital Pathology Avinash Kammardi Shashiprakash, Brendon Lutnick, Brandon Ginley, Darshana Govind, Nicholas J. Lucarelli, Kuang-Yu Jen, Avi Z. Rosenberg, Anatoly Urisman, Vighnesh Walavalkar, Jonathan E. Zuckerman, Marco Delsante, Mei Lin Z. Bissonnette, John Tomaszewski, David Manthey, Pinaki Sarder
2021	—	`conf`	Automated detection and quantification of Wilms' Tumor 1-positive cells in murine diabetic kidney disease. Digital Pathology Darshana Govind, Briana A. Santo, Brandon Ginley, Rabi Yacoub, Avi Z. Rosenberg, Kuang-Yu Jen, Vighnesh Walavalkar, Gregory E. Wilding, Amber M. Worral, Imtiaz Mohammad, Pinaki Sarder
2021	J	`jnl`	Histo-fetch - On-the-fly processing of gigapixel whole slide images simplifies and speeds neural network training. CoRR Brendon Lutnick, Leema Krishna Murali, Brandon Ginley, Pinaki Sarder
2021	—	`conf`	In silico multi-compartment detection based on multiplex immunohistochemical staining in renal pathology. Digital Pathology Kuang-Yu Jen, Leema Krishna Murali, Brendon Lutnick, Brandon Ginley, Darshana Govind, Hidetoshi Mori, Guofeng Gao, Pinaki Sarder
2021	—	`conf`	User friendly, cloud based, whole slide image segmentation. Digital Pathology Brendon Lutnick, Avinash Kammardi Shashiprakash, David Manthey, Pinaki Sarder
2020	—	`conf`	Deep learning-based automated hot-spot detection and tumor grading in human gastrointestinal neuroendocrine tumor. Digital Pathology Darshana Govind, Kuang-Yu Jen, Pinaki Sarder
2020	—	`conf`	Fully automated classification of glomerular lesions in lupus nephritis. Digital Pathology Brandon Ginley, Kuang-Yu Jen, Avi Rosenberg, Giovanni Maria Rossi, Sanjay Jain, Pinaki Sarder
2020	—	`conf`	Generative modeling for label-free glomerular modeling and classification. Digital Pathology Brendon Lutnick, Brandon Ginley, Kuang-Yu Jen, Wen Dong, Pinaki Sarder
2020	—	`conf`	Generative modeling for renal microanatomy. Digital Pathology Leema Krishna Murali, Brendon Lutnick, Brandon Ginley, John Tomaszewski, Pinaki Sarder
2020	J	`jnl`	Neural Network Segmentation of Interstitial Fibrosis, Tubular Atrophy, and Glomerulosclerosis in Renal Biopsies. CoRR Brandon Ginley, Kuang-Yu Jen, Avi Rosenberg, Felicia Yen, Sanjay Jain, Agnes B. Fogo, Pinaki Sarder
2020	—	`conf`	Neutrophil Extracellular Traps (NETs): an unexplored territory in renal pathobiology, a pilot computational study. Digital Pathology Briana A. Santo, Brahm H. Segal, John Tomaszewski, Imtiaz Mohammad, Amber M. Worral, Sanjay Jain, Michelle B. Visser, Pinaki Sarder
2020	—	`conf`	Probabilistic modelling of diabetic nephropathy progression. Digital Pathology Samuel P. Border, Kuang-Yu Jen, Washington L. C. dos-Santos, John Tomaszewski, Pinaki Sarder
2020	—	`conf`	The presence and location of podocytes in glomeruli as affected by diabetes mellitus. Digital Pathology Kathryn E. Maraszek, Briana A. Santo, Rabi Yacoub, John Tomaszewski, Imtiaz Mohammad, Amber M. Worral, Pinaki Sarder
2020	J	`jnl`	Unsupervised Community Detection with a Potts Model Hamiltonian, an Efficient Algorithmic Solution, and Applications in Digital Pathology. CoRR Brendon Lutnick, Wen Dong, Zohar Nussinov, Pinaki Sarder
2019	J	`jnl`	An integrated iterative annotation technique for easing neural network training in medical image analysis. Nat. Mach. Intell. Brendon Lutnick, Brandon Ginley, Darshana Govind, Sean D. McGarry, Peter S. LaViolette, Rabi Yacoub, Sanjay Jain, John Tomaszewski, Kuang-Yu Jen, Pinaki Sarder
2019	—	`conf`	Computational analysis of cerebrovascular structures imaged using two-photon microscopy. Digital Pathology Siddhartha Dhiman, Itender Singh, Pinaki Sarder
2019	—	`conf`	Examining structural patterns and causality in diabetic nephropathy using inter-glomerular distance and Bayesian graphical models. Digital Pathology Aurijoy Majumdar, Kuang-Yu Jen, Sanjay Jain, John Tomaszewski, Pinaki Sarder
2018	—	`conf`	Computational analysis of the structural progression of human glomeruli in diabetic nephropathy. Digital Pathology Brandon G. Ginley, John Tomaszewski, Kuang-Yu Jen, Agnes B. Fogo, Sanjay Jain, Pinaki Sarder
2018	—	`conf`	Deep variational auto-encoders for unsupervised glomerular classification. Digital Pathology Brendon Lutnick, Rabi Yacoub, Kuang-Yu Jen, John Tomaszewski, Sanjay Jain, Pinaki Sarder
2018	—	`conf`	Examining structural changes in diabetic nephropathy using inter-nuclear distances in glomeruli: a comparison of variously automated methods. Digital Pathology Olivier Simon, Rabi Yacoub, Sanjay Jain, John Tomaszewski, Pinaki Sarder
2018	—	`conf`	Glomerular detection and segmentation from multimodal microscopy images using a Butterworth band-pass filter. Digital Pathology Darshana Govind, Brandon Ginley, Brendon Lutnick, John Tomaszewski, Pinaki Sarder
2018	J	`jnl`	Iterative annotation to ease neural network training: Specialized machine learning in medical image analysis. CoRR Brendon Lutnick, Brandon Ginley, Darshana Govind, Sean D. McGarry, Peter S. LaViolette, Rabi Yacoub, Sanjay Jain, John Tomaszewski, Kuang-Yu Jen, Pinaki Sarder
2017	—	`conf`	Automatic computational labeling of glomerular textural boundaries. Digital Pathology Brandon Ginley, John Tomaszewski, Pinaki Sarder
2017	—	`conf`	Identification and characterization of neutrophil extracellular trap shapes in flow cytometry. Digital Pathology Brandon Ginley, Tiffany Emmons, Prabhu Sasankan, Constantin Urban, Brahm H. Segal, Pinaki Sarder
2017	—	`conf`	Leveraging unsupervised training sets for multi-scale compartmentalization in renal pathology. Digital Pathology Brendon Lutnick, John Tomaszewski, Pinaki Sarder
2016	—	`conf`	Automated renal histopathology: digital extraction and quantification of renal pathology. Digital Pathology Pinaki Sarder, Brandon Ginley, John Tomaszewski
2012	J	`jnl`	Segmenting Intracellular Distribution Images Derived by Fluorescent Dyes Using a Potts Model Hamiltonian CoRR Dandan Hu, Pinaki Sarder, Peter Ronhovde, Sharon Bloch, Samuel Achilefu, Zohar Nussinov
2011	—	`conf`	Statistical design of position-encoded microsphere arrays at low target concentrations. ACSCC Xiaoxiao Xu, Pinaki Sarder, Arye Nehorai
2010	—	`ch.`	Gene Reachability Using Page Ranking on Gene Co-expression Networks. Link Mining Pinaki Sarder, Weixiong Zhang, J. Perren Cobb, Arye Nehorai
2006	J	`jnl`	Deconvolution methods for 3-D fluorescence microscopy images. IEEE Signal Process. Mag. Pinaki Sarder, Arye Nehorai