Pilar Cossio

15 papers A* 1Journal 14
YearRankTypeTitle / Venue / Authors
2026 J jnl
Robust Inference-Time Steering of Protein Diffusion Models via Embedding Optimization.
CoRR
Minhuan Li, Jiequn Han, Pilar Cossio, Luhuan Wu
2025 J jnl
Cryo-em images are intrinsically low dimensional.
CoRR
Luke Evans, Octavian-Vlad Murad, Lars Dingeldein, Pilar Cossio, Roberto Covino, Marina Meila
2024 A* conf
CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EM.
NeurIPS
Minkyu Jeon, Rishwanth Raghu, Miro Astore, Geoffrey Woollard, Ryan Feathers, Alkin Kaz, Sonya M. Hanson, Pilar Cossio, Ellen D. Zhong
2024 J jnl
CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EM.
CoRR
Minkyu Jeon, Rishwanth Raghu, Miro Astore, Geoffrey Woollard, Ryan Feathers, Alkin Kaz, Sonya M. Hanson, Pilar Cossio, Ellen D. Zhong
2023 J jnl
Simulation-based inference of single-molecule force spectroscopy.
Mach. Learn. Sci. Technol.
Lars Dingeldein, Pilar Cossio, Roberto Covino
2022 J jnl
Protocol for iterative optimization of modified peptides bound to protein targets.
J. Comput. Aided Mol. Des.
Rodrigo Ochoa, Pilar Cossio, Thomas Fox
2021 J jnl
PARCE: Protocol for Amino acid Refinement through Computational Evolution.
Comput. Phys. Commun.
Rodrigo Ochoa, Miguel A. Soler, Alessandro Laio, Pilar Cossio
2020 J jnl
An automated protocol for modelling peptide substrates to proteases.
BMC Bioinform.
Rodrigo Ochoa, Mikhail D. Magnitov, Roman A. Laskowski, Pilar Cossio, Janet M. Thornton
2020 J jnl
Flexi-pharma: a molecule-ranking strategy for virtual screening using pharmacophores from ligand-free conformational ensembles.
J. Comput. Aided Mol. Des.
Isaias Lans, Karen Palacio-Rodríguez, Claudio N. Cavasotto, Pilar Cossio
2020 J jnl
In silico discovery and biological validation of ligands of FAD synthase, a promising new antimicrobial target.
PLoS Comput. Biol.
Isaias Lans, Ernesto Anoz-Carbonell, Karen Palacio-Rodríguez, José Antonio Aínsa, Milagros Medina, Pilar Cossio
2020 J jnl
Need for Cross-Validation of Single Particle Cryo-EM.
J. Chem. Inf. Model.
Pilar Cossio
2019 J jnl
Predicting the Affinity of Peptides to Major Histocompatibility Complex Class II by Scoring Molecular Dynamics Simulations.
J. Chem. Inf. Model.
Rodrigo Ochoa, Alessandro Laio, Pilar Cossio
2017 J jnl
BioEM: GPU-accelerated computing of Bayesian inference of electron microscopy images.
Comput. Phys. Commun.
Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Volker Lindenstruth, Gerhard Hummer
2013 J jnl
BACHSCORE. A tool for evaluating efficiently and reliably the quality of large sets of protein structures.
Comput. Phys. Commun.
Edoardo Sarti, Stefano Zamuner, Pilar Cossio, Alessandro Laio, Flavio Seno, Antonio Trovato
2010 J jnl
Exploring the Universe of Protein Structures beyond the Protein Data Bank.
PLoS Comput. Biol.
Pilar Cossio, Antonio Trovato, Fabio Pietrucci, Flavio Seno, Amos Maritan, Alessandro Laio