Pieter Meysman

28 papers Journal 26Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
tcrBLOSUM: an amino acid substitution matrix for sensitive alignment of distant epitope-specific TCRs.
Briefings Bioinform.
Anna Postovskaya, Koen Vercauteren, Pieter Meysman, Kris Laukens
2023 J jnl
The pitfalls of negative data bias for the T-cell epitope specificity challenge.
Nat. Mac. Intell.
Ceder Dens, Kris Laukens, Wout Bittremieux, Pieter Meysman
2022 J jnl
MoMAC: Multi-objective optimization to combine multiple association rules into an interpretable classification.
Appl. Intell.
Danh Bui Thi, Pieter Meysman, Kris Laukens
2022 J jnl
Simulations that capture antigen-antibody complexity.
Nat. Comput. Sci.
Pieter Meysman
2021 J jnl
ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity.
Bioinform.
Sebastiaan Valkiers, Marc van Houcke, Kris Laukens, Pieter Meysman
2021 J jnl
Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification.
Briefings Bioinform.
Pieter Moris, Joey De Pauw, Anna Postovskaya, Sofie Gielis, Nicolas De Neuter, Wout Bittremieux, Benson Ogunjimi, Kris Laukens, Pieter Meysman
2020 J jnl
Clustering association rules to build beliefs and discover unexpected patterns.
Appl. Intell.
Danh Bui Thi, Pieter Meysman, Kris Laukens
2020 J jnl
MILES: a Java tool to extract node-specific enriched subgraphs in biomolecular networks.
Bioinform.
Pieter Moris, Danh Bui Thi, Kris Laukens, Pieter Meysman
2019 J jnl
Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph.
IEEE ACM Trans. Comput. Biol. Bioinform.
Pieter Meysman, Yvan Saeys, Ehsan Sabaghian, Wout Bittremieux, Yves Van de Peer, Bart Goethals, Kris Laukens
2019 J jnl
On the viability of unsupervised T-cell receptor sequence clustering for epitope preference.
Bioinform.
Pieter Meysman, Nicolas De Neuter, Sofie Gielis, Danh Bui Thi, Benson Ogunjimi, Kris Laukens
2018 J jnl
Grasping frequent subgraph mining for bioinformatics applications.
BioData Min.
Aida Mrzic, Pieter Meysman, Wout Bittremieux, Pieter Moris, Boris Cule, Bart Goethals, Kris Laukens
2018 J jnl
speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification.
PLoS Comput. Biol.
Charlie Beirnaert, Pieter Meysman, Trung-Nghia Vu, Nina Hermans, Sandra Apers, Luc Pieters, Adrian Covaci, Kris Laukens
2017 J jnl
Ten simple rules for forming a scientific professional society.
PLoS Comput. Biol.
Bruno A. Gaëta, Javier De Las Rivas, Paul Horton, Pieter Meysman, Nicola J. Mulder, Paolo Romano, Lonnie R. Welch
2017 J jnl
sfinx: an R package for the elimination of false positives from affinity purification-mass spectrometry datasets.
Bioinform.
Kevin Titeca, Pieter Meysman, Kris Laukens, Lennart Martens, Jan Tavernier, Sven Eyckerman
2016 J jnl
COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses.
Nucleic Acids Res.
Marco Moretto, Paolo Sonego, Nicolas Dierckxsens, Matteo Brilli, Luca Bianco, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Marco Galardini, Chiara Romualdi, Kris Laukens, Julio Collado-Vides, Pieter Meysman, Kristof Engelen
2016 J jnl
Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015.
BMC Bioinform.
Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Raju Nagarajan, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic
2015 J jnl
A primer to frequent itemset mining for bioinformatics.
Briefings Bioinform.
Stefan Naulaerts, Pieter Meysman, Wout Bittremieux, Trung-Nghia Vu, Wim Vanden Berghe, Bart Goethals, Kris Laukens
2015 J jnl
Highlights from the Third European International Society for Computational Biology (ISCB) Student Council Symposium 2014.
BMC Bioinform.
Margherita Francescatto, Susanne M. A. Hermans, Sepideh Babaei, Esmeralda Vicedo, Alexandre Borrel, Pieter Meysman
2015 — conf
Mining Association Rules in Graphs Based on Frequent Cohesive Itemsets.
PAKDD (2)
Tayena Hendrickx, Boris Cule, Pieter Meysman, Stefan Naulaerts, Kris Laukens, Bart Goethals
2015 J jnl
Mining the entire Protein DataBank for frequent spatially cohesive amino acid patterns.
BioData Min.
Pieter Meysman, Cheng Zhou, Boris Cule, Bart Goethals, Kris Laukens
2015 J jnl
Mining the human proteome for conserved mechanisms.
BMC Bioinform.
Stefan Naulaerts, Pieter Meysman, Wim Vanden Berghe, Kris Laukens
2014 J jnl
COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia.
Nucleic Acids Res.
Pieter Meysman, Paolo Sonego, Luca Bianco, Qiang Fu, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Veerle Liebens, Jan Michiels, Kris Laukens, Kathleen Marchal, Julio Collado-Vides, Kristof Engelen
2014 J jnl
Discovery of Spatially Cohesive Itemsets in Three-Dimensional Protein Structures.
IEEE ACM Trans. Comput. Biol. Bioinform.
Cheng Zhou, Pieter Meysman, Boris Cule, Kris Laukens, Bart Goethals
2014 J jnl
MAGIC: access portal to a cross-platform gene expression compendium for maize.
Bioinform.
Qiang Fu, Ana Carolina Fierro, Pieter Meysman, Aminael Sánchez-Rodríguez, Klaas Vandepoele, Kathleen Marchal, Kristof Engelen
2014 J jnl
Soft Skills: An Important Asset Acquired from Organizing Regional Student Group Activities.
PLoS Comput. Biol.
Jeroen de Ridder, Pieter Meysman, Olugbenga Oluseun Oluwagbemi, Thomas Abeel
2013 — conf
Mining spatially cohesive itemsets in protein molecular structures.
BIOKDD
Cheng Zhou, Pieter Meysman, Boris Cule, Kris Laukens, Bart Goethals
2011 J jnl
Query-based biclustering of gene expression data using Probabilistic Relational Models.
BMC Bioinform.
Hui Zhao, Lore Cloots, Tim Van den Bulcke, Yan Wu, Riet De Smet, Valerie Storms, Pieter Meysman, Kristof Engelen, Kathleen Marchal
2011 J jnl
Use of structural DNA properties for the prediction of transcription-factor binding sites in
Nucleic Acids Res.
Pieter Meysman, Thanh Hai Dang, Kris Laukens, Riet De Smet, Yan Wu, Kathleen Marchal, Kristof Engelen