Pieter C. Dorrestein

12 papers B 3Journal 9
YearRankTypeTitle / Venue / Authors
2023 J jnl
DeepSAT: Learning Molecular Structures from Nuclear Magnetic Resonance Data.
J. Cheminformatics
Hyun Woo Kim, Chen Zhang, Raphael Reher, Mingxun Wang, Kelsey L. Alexander, Louis-Félix Nothias, Yoo Kyong Han, Hyeji Shin, Ki Yong Lee, Kyu Hyeong Lee, Myeong Ji Kim, Pieter C. Dorrestein, William H. Gerwick, Garrison W. Cottrell
2023 J jnl
Improving annotation propagation on molecular networks through random walks: introducing ChemWalker.
Bioinform.
Tiago Cabral Borelli, Gabriel Santos Arini, Luís G. P. Feitosa, Pieter C. Dorrestein, Norberto Peporine Lopes, Ricardo Roberto da Silva
2020 J jnl
Database-independent molecular formula annotation using Gibbs sampling through ZODIAC.
Nat. Mach. Intell.
Marcus Ludwig, Louis-Félix Nothias, Kai Dührkop, Irina Koester, Markus Fleischauer, Martin A. Hoffmann, Daniel Petras, Fernando Vargas, Mustafa Morsy, Lihini Aluwihare, Pieter C. Dorrestein, Sebastian Böcker
2020 J jnl
Publisher Correction: Database-independent molecular formula annotation using Gibbs sampling through ZODIAC.
Nat. Mach. Intell.
Marcus Ludwig, Louis-Félix Nothias, Kai Dührkop, Irina Koester, Markus Fleischauer, Martin A. Hoffmann, Daniel Petras, Fernando Vargas, Mustafa Morsy, Lihini Aluwihare, Pieter C. Dorrestein, Sebastian Böcker
2019 B conf
De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments.
RECOMB
Bahar Behsaz, Hosein Mohimani, Alexey A. Gurevich, Andrey D. Prjibelski, Mark F. Fisher, Larry Smarr, Pieter C. Dorrestein, Joshua S. Mylne, Pavel A. Pevzner
2019 J jnl
Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen.
PLoS Comput. Biol.
Joanne K. Liu, Colton J. Lloyd, Mahmoud M. Al-Bassam, Ali Ebrahim, Ji-Nu Kim, Connor A. Olson, Alexander Aksenov, Pieter C. Dorrestein, Karsten Zengler
2018 J jnl
Propagating annotations of molecular networks using in silico fragmentation.
PLoS Comput. Biol.
Ricardo Roberto da Silva, Mingxun Wang, Louis-Félix Nothias, Justin J. J. van der Hooft, Andrés Mauricio Caraballo-Rodríguez, Evan Fox, Marcy J. Balunas, Jonathan L. Klassen, Norberto Peporine Lopes, Pieter C. Dorrestein
2017 J jnl
Computational Metabolomics: Identification, Interpretation, Imaging (Dagstuhl Seminar 17491).
Dagstuhl Reports
Theodore Alexandrov, Sebastian Böcker, Pieter C. Dorrestein, Emma Schymanski
2014 J jnl
Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products.
PLoS Comput. Biol.
Marnix H. Medema, Yared Paalvast, Don D. Nguyen, Alexey Melnik, Pieter C. Dorrestein, Eriko Takano, Rainer Breitling
2011 B conf
Multiplex De Novo Sequencing of Peptide Antibiotics.
RECOMB
Hosein Mohimani, Wei-Ting Liu, Yu-Liang Yang, Susana P. Gaudêncio, William Fenical, Pieter C. Dorrestein, Pavel A. Pevzner
2011 J jnl
Multiplex De Novo Sequencing of Peptide Antibiotics.
J. Comput. Biol.
Hosein Mohimani, Wei-Ting Liu, Yu-Liang Yang, Susana P. Gaudêncio, William Fenical, Pieter C. Dorrestein, Pavel A. Pevzner
2008 B conf
De Novo Sequencing of Nonribosomal Peptides.
RECOMB
Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter C. Dorrestein, Pavel A. Pevzner